Intact plant MRI for the study of cell water relations, membrane permeability, cell-to-cell and long distance water transport

Water content and hydraulic conductivity, including transport within cells, over membranes, cell-to-cell, and long-distance xylem and phloem transport, are strongly affected by plant water stress. By being able to measure these transport processes non-invasely in the intact plant situation in relation to the plant (cell) water balance, it will be possible explicitly or implicitly to examine many aspects of plant function, plant performance, and stress responses. Nuclear magnetic resonance imaging (MRI) techniques are now available that allow studying plant hydraulics on different length scales within intact plants. The information within MRI images can be manipulated in such a way that cell compartment size, water membrane permeability, water cell-to-cell transport, and xylem and phloem flow hydraulics are obtained in addition to anatomical information. These techniques are non-destructive and non-invasive and can be used to study the dynamics of plant water relations and water transport, for example, as a function of environmental (stress) conditions. An overview of NMR and MRI methods to measure such information is presented and hardware solutions for minimal invasive intact plant MRI are discussed.     

EPR studies of higher plant mitochondria. II. Center S-3 of succinate dehydrogenase and its relation to alternative respiratory oxidations.

1. An electron paramagnetic resonance study of the high potential iron sulfur (HiPIP-type) Center S-3 of higher plant mitochondria is described. This center is the major HiPIP-type center associated with plant mitochondria and it displays physical properties which are similar to its mammalian counterpart. It has a pH-independent midpoint potential of +65 +/- 10 mV between pH 6.0 and 8.5. 2. The behavior of Center S-3 in a variety of steady-state conditions suggests that it is of physiological significance in electron transport. Furthermore, it can be shown that the alternative oxidase, which is present in many higher plant mitochondria, tends to keep this center oxidized in the presence of succinate and cyanide. This indicates that the alternative oxidation site is on the electron-donating side of the Center S-3. 3. Salicylhydroxamic acid, an inhibitor of the alternative pathway, does not affect the midpoint potential, signal size or shape, or temperature and power saturation profiles of Center S-3, suggesting that direct autoxidation of this center cannot account for alternative oxidase activity. This is further confirmed by the finding that the presence of succinate dehydrogenase is not necessary for alternative oxidase activity with NADH as respiratory substrate in submitochondrial particles.     

Can we use diffusion MRI as a bio-marker of neurodegenerative processes?

Magnetic resonance imaging (MRI) is an imaging technique with a rapidly expanding application range. This methodology, which relies on quantum physics and substance magnetic properties, is now being routinely used in the clinics and medical research. With the advent of measuring functional brain activity with MRI (functional MRI), this methodology has reached a larger section of the neuroscience community (e.g. psychologists, neurobiologists). In the past, the use of MRI as a biomarker or as an assay to probe tissue pathophysiological condition was limited. However, with the new applications of MRI: molecular imaging, contrast-enhanced imaging and diffusion imaging, MRI is turning into a powerful tool for in vivo characterization of tissue pathophysiology. This review focuses on the diffusion MRI. Although it only measures the averaged Brownian translational motion of water molecules, using different analysis schemes, one can extract a wide range of quantitative indices that represent tissue morphology and compartmentalization. Statistical and visualization routines help to relate these indices to biologically relevant measures such as cell density, water content and size distribution. The aim of this review is to shed light on the potential of this methodology to be used in biological research. To that end, this review is intended for the non-MRI specialists who wish to pursue biological research with this methodology. We will overview the current applications of diffusion MRI and its relation to cellular biology of brain tissue.     

MRI of intact plants

Nuclear magnetic resonance imaging (MRI) is a non-destructive and non-invasive technique that can be used to acquire two- or even three-dimensional images of intact plants. The information within the images can be manipulated and used to study the dynamics of plant water relations and water transport in the stem, e.g., as a function of environmental (stress) conditions. Non-spatially resolved portable NMR is becoming available to study leaf water content and distribution of water in different (sub-cellular) compartments. These parameters directly relate to stomatal water conductance, CO₂ uptake, and photosynthesis. MRI applied on plants is not a straight forward extension of the methods discussed for (bio)medical MRI. This educational review explains the basic physical principles of plant MRI, with a focus on the spatial resolution, factors that determine the spatial resolution, and its unique information for applications in plant water relations that directly relate to plant photosynthetic activity.     

Simultaneous PET-MRI: a new approach for functional and morphological imaging

Noninvasive imaging at the molecular level is an emerging field in biomedical research. This paper introduces a new technology synergizing two leading imaging methodologies: positron emission tomography (PET) and magnetic resonance imaging (MRI). Although the value of PET lies in its high-sensitivity tracking of biomarkers in vivo, it lacks resolving morphology. MRI has lower sensitivity, but produces high soft-tissue contrast and provides spectroscopic information and functional MRI (fMRI). We have developed a three-dimensional animal PET scanner that is built into a 7-T MRI. Our evaluations show that both modalities preserve their functionality, even when operated isochronously. With this combined imaging system, we simultaneously acquired functional and morphological PET-MRI data from living mice. PET-MRI provides a powerful tool for studying biology and pathology in preclinical research and has great potential for clinical applications. Combining fMRI and spectroscopy with PET paves the way for a new perspective in molecular imaging.     

Diffusion Magnetic Resonance Imaging: What Water Tells Us about Biological Tissues

Since its introduction in the mid-1980s, diffusion magnetic resonance imaging (MRI), which measures the random motion of water molecules in tissues, revealing their microarchitecture, has become a pillar of modern neuroimaging. Its main clinical domain has been the diagnosis of acute brain stroke and neurogical disorders, but it is also used in the body for the detection and management of cancer lesions. It can also produce stunning maps of white matter tracks in the brain, with the potential to aid in the understanding of some psychiatric disorders. However, in order to exploit fully the potential of this method, a deeper understanding of the mechanisms that govern the diffusion of water in tissues is needed.In the mid-1980s, we showed that water diffusion in the human brain could be imaged by using magnetic resonance imaging (MRI) [1]. Since then, diffusion MRI has enjoyed a dramatic growth, with about 24,000 articles referenced in PubMed in 2014. MRI is a medical imaging technique consisting of magnetizing body atom nuclei, generally hydrogen nuclei of water molecules, using a very strong magnetic field (typically 30,000 to 60,000 times the earth’s natural magnetic field). The resulting very tiny magnetization can be manipulated in time by sending radiofrequency wave pulses at a resonant frequency. In turn, magnetized nuclei re-emit radiofrequency waves, creating a signal that is received through a coil (a kind of antenna), giving information on the nuclei magnetization properties. Magnetic field “gradient” pulses are used in addition to induce small variations of the magnetic field (and the associated radiowaves’ resonant frequency) in space, so as to spatially encode the magnetization information and create images. Magnetization varies a lot between tissues and various disease conditions, making MRI a very versatile imaging modality. However, the resolution of MRI images used for clinical practice often remains limited, typically around 1 mm (microscopic MRI is possible, but with dedicated preclinical MRI systems using ultra-high magnetic fields; see below). The concept of diffusion MRI emerged as a way to probe tissue structure at a microscopic (invisible) scale, although images are acquired at a millimetric scale: during their random, diffusion-driven displacements in the tissue, the water molecules probe the tissue structure at a microscopic scale, interacting with cell membranes, thus providing unique information on the functional architecture of tissues. Diffusion MRI has become a pillar of modern clinical imaging, used mainly to investigate neurological disorders such as acute brain ischemia, although it is now also a standard imaging method for other organs too, especially for the management of cancer patients. Indeed, diffusion MRI that does not require any tracer injection is rapidly becoming a modality of choice to detect and characterize malignant lesions. Moreover, in the brain, diffusion anisotropy in white matter can be exploited to produce stunning three-dimensional maps of brain connections, revealing faulty connections in some psychiatric disorders. More recently, diffusion MRI has been applied to monitor the dynamic changes occurring in the neural tissue structure during activation, a new approach to investigate functional neuroimaging and the mechanisms underlying neuronal activation.It is amazing that all these applications of diffusion MRI have emerged or developed while so little is known about water diffusion mechanisms in biological tissues. The relative importance of many factors governing water in tissues and their effects on the observed MRI signal are still not fully understood and are sometimes a subject of controversy.We will discuss the main applications and the outstanding issues remaining in the field in more detail below.     

Intact plant magnetic resonance imaging to study dynamics in long-distance sap flow and flow-conducting surface area

Due to the fragile pressure gradients present in the xylem and phloem, methods to study sap flow must be minimally invasive. Magnetic resonance imaging (MRI) meets this condition. A dedicated MRI method to study sap flow has been applied to quantify long-distance xylem flow and hydraulics in an intact cucumber (Cucumis sativus) plant. The accuracy of this MRI method to quantify sap flow and effective flow-conducting area is demonstrated by measuring the flow characteristics of the water in a virtual slice through the stem and comparing the results with water uptake data and microscopy. The in-plane image resolution of 120 x 120 microm was high enough to distinguish large individual xylem vessels. Cooling the roots of the plant severely inhibited water uptake by the roots and increased the hydraulic resistance of the plant stem. This increase is at least partially due to the formation of embolisms in the xylem vessels. Refilling the larger vessels seems to be a lengthy process. Refilling started in the night after root cooling and continued while neighboring vessels at a distance of not more than 0.4 mm transported an equal amount of water as before root cooling. Relative differences in volume flow in different vascular bundles suggest differences in xylem tension for different vascular bundles. The amount of data and detail that are presented for this single plant demonstrates new possibilities for using MRI in studying the dynamics of long-distance transport in plants.     

植物核糖体应激响应机制研究进展

核仁是真核细胞中重要的核结构,核糖体发生最初在核仁中进行,该过程涉及一系列复杂的反应,需要许多核仁相关因子参与。核糖体生物发生出现异常通常引起核仁结构紊乱,并导致细胞周期阻滞、细胞衰老甚至凋亡。核糖体应激响应机制在哺乳动物细胞中研究得较为深入,但在植物细胞中尚不明晰。尽管如此,人们逐渐发现某些植物特有的NAC转录因子家族成员在植物细胞中可能参与包括核糖体应激在内的多种胞内应激响应过程。此外,前期研究发现生长素系统与核糖体生物合成之间存在一种相互协调机制来调控植物发育。该文结合哺乳动物细胞中已知的核糖体应激响应通路,探讨植物细胞潜在的核糖体应激机制。     

Higher plant cell membrane resistance by a single intracellular electrode method

A single intracellular microelectrode technique has been adapted to measure membrane resistance in a higher plant cell. As a direct result of the convenience of this method, which allows relatively long term recordings on a single cell, it has been found that membrane resistance increases for about 30 minutes after cell impalement in Pisum sativum L. cv. Alaska root cortical cells, although cell potential is established at a constant value in less than 2 minutes. It is proposed that these observations imply a regulating feedback loop between electrogenic pump rates and membrane potential.     

Tracking stem cell migration and survival in brain injury: Current approaches and future prospects

In recent years, stem cell-mediated therapies have gained considerable ground as potential treatments for a wide variety of brain pathologies including traumatic brain injury, stroke and neurodegenerative diseases. Despite extensive preclinical studies, many of these therapies have not been fully translated into viable clinical approaches. This is partly due to our inability to reliably track and monitor transplanted stem cells longitudinally over long periods of time in vivo. In this review, we discuss the predominant histological cell tracing methodologies, such as immunohistochemistry, and fluorescent cellular dyes and proteins, and compare them to emerging cellular imaging technologies. We show that advances in magnetic resonance imaging (MRI) have resulted in opportunities to use this technology to further our understanding of stem cell characteristics and behaviors in vivo. While MRI may not completely replace conventional cell tracking methods in pre-clinical, mechanistic work, it is clear that it has the potential to function as a powerful diagnostic tool for tracking stem cell migration and survival as well as for evaluating the efficacy of stem cell-mediated therapies.     

施氮量对麻疯树幼苗生长及叶片光合特性的影响

采用盆栽土培的方法,研究了不同施氮量(对照N₀ 0 kg N/hm²、低氮N_L 96 kg N/hm²、中氮N_M 288 kg N/hm²、高氮N_H 480 kg N/hm²)对麻疯树幼苗生长、叶片气体交换及叶绿素荧光参数的影响。结果表明,麻疯树幼苗叶片氮含量、可溶性蛋白含量、株高、地径、叶片数量、叶面积、根长、各组分生物量、叶片净光合速率(P_n)、气孔导度(G_s)、蒸腾速率(T_r)和水分利用效率(WUE)均随施氮量的增加先升高后降低,N_M处理下麻疯树幼苗长势最好,各气体交换参数值最高;施氮对麻疯树地上部分的促进作用远大于地下部分,施氮后根冠比显著降低;此外,麻疯树叶绿素含量、PSⅡ最大光化学量子产量(Fv/Fm)、PSⅡ有效量子产量(F'v/F'm)、PSⅡ实际光化学效率(Φ_PSⅡ)、电子传递速率(ETR)和光化学淬灭系数(qP)均随施氮量的增加而升高,非光化学淬灭系数(NPQ)随施氮量增加而降低。适量施氮可通过增强叶绿体光化学活性、气孔导度和羧化能力而提高麻疯树幼苗的光合能力,促进生长;过高施氮对麻疯树幼苗光合与生长的促进效应降低。试验条件下,当年生麻疯树幼苗的最适施氮量为288 kg N/hm²。     

Novel and potential application of cryopreservation to plant genetic transformation

The world population now is 6.7 billion and is predicted to reach 9 billion by 2050. Such a rapid growing population has tremendously increased the challenge for food security. Obviously, it is impossible for traditional agriculture to ensure the food security, while plant biotechnology offers considerable potential to realize this goal. Over the last 15 years, great benefits have been brought to sustainable agriculture by commercial cultivation of genetically modified (GM) crops. Further development of new GM crops will with no doubt contribute to meeting the requirements for food by the increasing population. The present article provides updated comprehensive information on novel and potential application of cryopreservation to genetic transformation. The major progresses that have been achieved in this subject include (1), long-term storage of a large number of valuable plant genes, which offers a good potential for further development of novel cultivars by genetic transformation; (2), retention of regenerative capacity of embryogenic tissues and protoplasts, which ensures efficient plant regeneration system for genetic transformation; (3), improvement of transformation efficiency and plant regeneration of transformed cells; (4), long-term preservation of transgenic materials with stable expression of transgenes and productive ability of recombinant proteins, which allows transgenic materials to be stored in a safe manner before being analyzed and evaluated, and allows establishment of stable seed stocks for commercial production of homologous proteins. Data provided in this article clearly demonstrate that cryo-technique has an important role to play in the whole chain of genetic transformation. Further studies coupling cryotechnique and genetic transformation are expected to significantly improve development of new GM crops.     

The enigmatic fast leaflet rotation in Desmodium motorium: Butterfly mimicry for defense?

I propose that the enigmatic leaflet movements in elliptical circles every few minutes of the Indian telegraph (semaphore) plant Desmodium motorium ( = D. gyrans = Hedysarum gyrans = Codariocalyx motorius), which has intrigued scientists for centuries, is a new type of butterfly or general winged arthropod mimicry by this plant. Such leaflet movement may deceive a passing butterfly searching for an un-occupied site suitable to deposit its eggs, that the plant is already occupied. It may also attract insectivorous birds, reptiles or arthropods to the plant because it looks as if it is harboring a potential prey and while they patrol there, they can find insects or other invertebrates that indeed attack the plant. The possibility that diurnal mammalian herbivores may also be deterred by these movements should not be dismissed.     

Pine invasions in the southern hemisphere: modelling interactions between organism,environment and disturbance

Current theories of plant invasion have been criticized for their limited heuristic and predictive value. We explore the heuristic and predictive potential of a model which explicitly simulates the mechanisms of plant invasion. The model, a spatially-explicit individual-based simulation, is applied to the invasion of pine trees (Pinus spp.; Pinaceae) in three vegetation types in the southern hemisphere. The model simulates factors which have been invoked as major determinants of invasive success: plant traits, environmental features and disturbance level. Results show that interactions between these determinants of invasive success are at least as important as the main effects. The complexity of invasions has promoted the belief that many factors must be invoked to explain invasions. This study shows that by incorporating interactions and mechanisms into our models we can potentially reduce the number of factors needed to predict plant invasions. The importance of interactions, however, means that predictions about invasions must be context-specific. The search for all-encompassing rules for invasions is therefore futile. The model presented here is of heuristic value since it improves our understanding of invasions, and of management value since it defines the data and models needed for predicting invasions.     

An application of nuclear magnetic resonance imaging to study migration rates of oil-related residues in estuarine sediments

Organisations such as the Marine Control Pollution Unit of the Department of Transport are at present testing the suitability of burial and landfarming of oily residues in sandy coastal environments as an alternative to landfill sites. The tendency for oil related compounds to sorb to sediments has been extensively investigated, but this has not permitted the 'observation' or measurement of advection/diffusion processes or the breakdown of these compounds within sediments.MRI, which is a multidimensional technique allowing the position of nuclei (most commonly protons) to be charted within a volume, provides a means of monitoring advection and diffusion of oil within sediments, thus offering a method of assessing the harming potential of oils in near-shore environments. A three dimensional MRI analysis of the movement of oil in an organic substrate and in three related estuarine sediments show that, using appropriate parameters, movement of the oil can be both observed and quantified. The results presented in terms of the % change of oil distribution within each sediment sample, show the great potential of MRI in studying protonated contaminants in these materials.     

Primary or secondary? Versatile nitrilases in plant metabolism

The potential of plant nitrilases to convert indole-3-acetonitrile into the plant growth hormone indole-3-acetic acid has earned them the interim title of "key enzyme in auxin biosynthesis". Although not widely recognized, this view has changed considerably in the last few years. Recent work on plant nitrilases has shown them to be involved in the process of cyanide detoxification, in the catabolism of cyanogenic glycosides and presumably in the catabolism of glucosinolates. All plants possess at least one nitrilase that is homologous to the nitrilase 4 isoform of Arabidopsis thaliana. The general function of these nitrilases lies in the process of cyanide detoxification, in which they convert the intermediate detoxification product beta-cyanoalanine into asparagine, aspartic acid and ammonia. Cyanide is a metabolic by-product in biosynthesis of the plant hormone ethylene, but it may also be released from cyanogenic glycosides, which are present in a large number of plants. In Sorghum bicolor, an additional nitrilase isoform has been identified, which can directly use a catabolic intermediate of the cyanogenic glycoside dhurrin, thus enabling the plant to metabolize its cyanogenic glycoside without releasing cyanide. In the Brassicaceae, a family of nitrilases has evolved, the members of which are able to hydrolyze catabolic products of glucosinolates, the predominant secondary metabolites of these plants. Thus, the general theme of nitrilase function in plants is detoxification and nitrogen recycling, since the valuable nitrogen of the nitrile group is recovered in the useful metabolites asparagine or ammonia. Taken together, a picture emerges in which plant nitrilases have versatile functions in plant metabolism, whereas their importance for auxin biosynthesis seems to be minor.     

An ecosystem-level perspective of allelopathy

Allelopathy is an interference mechanism by which plants release chemicals which affect other plants; while it has often been proposed as a mechanism for influencing plant populations and communities, its acceptance by plant ecologists has been limited because of methodological problems as well as difficulties of relating the results of bioassays used for testing allelopathy to vegetation patterns in the field. Here we argue that the concept of allelopathy is more appropriately applied at the ecosystem-level, rather than the traditional population/community level of resolution. Firstly, we consider the wide ranging effects of secondary metabolites (widely regarded as allelochemicals) on organisms and processes which regulate ecosystem function, including herbivory, decomposition and nutrient mineralization. It is apparent that plants with allelopathic potential against other organisms induce net changes in ecosystem properties, which may in turn impact upon the plant community in the longer term. We then illustrate these concepts using two contrasting examples of how invasive plant species with allelopathic potential may alter ecosystem properties through the production of secondary metabolites, i.e. Carduus nutans (nodding thistle) in New Zealand pastures and Empetrum hermaphroditum (crowberry) in Swedish boreal forests. In both cases the production of secondary metabolites by the invasive species induces important effects on other organisms and key processes, which help determine how the ecosystem functions and ultimately the structure of the plant community. These examples help demonstrate that the concept of allelopathy is most effectively applied at the ecosystem-level of resolution, rather than at the population-level (i.e. plant-plant interference).     

Community response to transgenic plant release: using mathematical theory to predict effects of transgenic plants

Predicting the potential effects of introductions of plants on the structure of plant communities has been elusive. I suggest that mathematical models of resource competition might be useful for identifying categories of plants that either are unlikely to alter community structure or that have the potential for altering community structure. Assuming that the transgenic plant will escape and establish viable populations in nontarget habitats, this theory suggests that species that have a high minimum resource requirement are unlikely to alter community structure. The theory is elaborated to evaluate the potential effects on community structure of transgenic plants with resistance to primary consumers. Results indicate that the greatest reduction in the minimum resource requirement caused by resistance will occur when consumers are consuming enough plant biomass that the plant can no longer grow. If resistance to such a consumer were incorporated into a plant, it could lower the minimum resource requirement sufficiently that a transgenic plant would be able to alter community structure substantially. Examples of introductions of exotic plants, plant pathogens, and insect herbivores are given to support the conceptual basis of the theory. Not all transgenic plants with resistance, however, have the potential to alter community structure. Resistance to primary consumers that strongly reduce the biomass producing ability of a plant will probably be able to alter community structure, whereas resistance that reduces most other types of yield loss is less likely to alter community structure. The theory should be elaborated to incorporate more-realistic assumptions, such as those regarding reproduction, dormancy, and dispersal of the transgenic plants, and provide more detailed characterization of the potential hazard of transgenic plants to plant communities.     

蔗糖合酶在植物生长发育中的作用研究

蔗糖合酶（SuSy）是植物蔗糖代谢的关键酶之一,在植物各组织中普遍存在。SuSy参与了植物体中许多代谢过程,包括淀粉及纤维素的合成,以及碳源的分配等。该酶还可影响植物的抗逆性、种子发育和生物固氮能力,因此,利用SUS基因改良作物品质具有良好的应用前景。对SuSy的性质、基因表达模式及其在植物生长发育中的作用进行综述。