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1.
The fungal kingdom is extremely diverse – comprised of over 1.5 million species including yeasts, molds and mushrooms. Essentially, all fungi have cell walls that contain chitin and the cells of most fungi grow as tube-like filaments called hyphae. These filamentous fungi, such as the mold Neurospora crassa, develop branched radial networks of hyphae referred to as mycelium. In contrast, non-filamentous fungi do not form radial mycelia, but grow as single cells, which reproduce by either budding or fission such as Saccharomyces cerevisiae or Schizosaccharomyces pombe, respectively. Finally, there are fungi that are capable of switching between single cell, yeast form growth and filamentous growth such as Candida albicans. The switch from yeast to filamentous growth in these so-called dimorphic fungi is a virulence trait in many human and plant pathogens. Highly conserved master regulators of all three fungal growth modes – filamentous, non-filamentous and dimorphic – are the Ras and Rho small GTPases, which spatially and temporally control cell polarity establishment and maintenance. This review summarizes the key roles of the Ras and Rho GTPases during hyphal morphogenesis in a range of fungi.  相似文献   

2.
Low soil water content (low matric potential) and salinity (low osmotic potential) occur frequently in soils, particularly in arid and semi-arid regions. Although the effect of low matric or low osmotic potential on soil microorganisms have been studied before, this is the first report which compares the effect of the two stresses on microbial activity and community structure. A sand and a sandy loam, differing in pore size distribution, nutrient content and microbial biomass and community structure, were used. For the osmotic stress experiment, salt (NaCl) was added to achieve osmotic potentials from ?0.99 to ?13.13 MPa (sand) and from ?0.21 to 3.41 MPa (sandy loam) after which the soils were pre-incubated at optimal water content for 10d. For the matric stress experiment, soils were also pre-incubated at optimal water content for 10d, after which the water content was adjusted to give matric potentials from ?0.03 and ?1.68 MPa (sand) and from ?0.10 to 1.46 MPa (sandy loam). After amendment with 2% (w/w) pea straw (C/N 26), soil respiration was measured over 14d. Osmotic potential decreased with decreasing soil water content, particularly in the sand. Soil respiration decreased with decreasing water potential (osmotic?+?matric). At a given water potential, respiration decreased to a greater extent in the matric stress experiment than in the osmotic stress experiment. Decreasing osmotic and matric potential reduced microbial biomass (sum of phospholipid fatty acids measured after 14 days) and changed microbial community structure: fungi were less tolerant to decreasing osmotic potential than bacteria, but more tolerant to decreasing water content. It is concluded that low matric potential may be more detrimental than a corresponding low osmotic potential at optimal soil water content. This is likely to be a consequence of the restricted diffusion of substrates and thus a reduced ability of the microbes to synthesise osmolytes to help maintain cell water content. The study also highlighted that it needs to be considered that decreasing soil water content concentrates the salts, hence microorganisms in dry soils are exposed to two stressors.  相似文献   

3.
The influence of inoculation with arbuscular mycorrhizal fungi (AM fungi) on soil water characteristics of fast and slowly wetted vertisol samples was studied. Vertisols characteristically have a low stability to wetting, and the disruption of their larger pores when they swell leads to reduced water infiltration and thereby to runoff. The degree of aggregate breakdown determines the ability of the soil to drain. A vertisol was used in this pot experiment with four treatments: T1: Pasteurized soil, T3: Pasteurized soil, with plants, T4: Inoculated, pasteurized soil, with plants, T5: Unpasteurized soil, with plants. A treatment using inoculated, pasteurized soil (T2) was included in a related study (Bearden and Petersen, 2000) comparing aggregate stability, and the present study follows the same numbering to aid in comparison of experiments. After fast, disruptive wetting, the soil inoculated with AM fungi (T4) was found to have a lower soil water content than did the soils from the other treatments at matric potentials lower than –3.92 kPa. This indicates greater drainage from pores smaller than 75 m for the soil inoculated with AM fungi, and the greater drainage appears to be directly related to a characteristic pore range between 67 and 75 m. The soil without plants (T1), when wetted fast, had a lower soil water content at matric potentials higher than –3.92 kPa than soils from the other treatments, which indicates less pore volume due to pores larger than 75 m in the treatment without plants. The pore indexes, calculated as the ratio between the slope of the fast and the slope of the slowly-wetted water characteristics, generally had the highest values for the soil inoculated with AM fungi (T4) from matric potential 0.00 to –0.29 kPa. In this matric potential range, the pore indexes were less than one. The unpasteurized soil with naturally present AM fungi (T5) generally had the highest pore indexes from matric potential –0.49 to –3.92 kPa, and the pore indexes in this matric potential range were above one. These results indicate the smallest loss of very large pores in the soil inoculated with AM fungi (T4) and the largest gain of smaller sized pores in the unpasteurized soil (T5). This suggests that the resistance to breakdown of the largest pores is related to the presence of roots, and that the gain of groups of smaller pores is related to the presence of hyphae.  相似文献   

4.
Changes in Agrobacterium colony and cell morphology were observed following co-culture of the bacterium with a variety of different plant tissues. Bacterial colonies grown in the presence of plant tissue became opaque and appeared to grow as a thick mat of cells. A single bacterial colony would often grow to fill an entire 100-mm-diameter petri dish. Ultrastructural observations of the bacteria in these colonies revealed the formation of a predominantly filamentous form of the bacterium. The bacteria ranged from 5 to 100 µm in length as compared to 2 µm in the non-filamentous form. The filamentous form was observed 2-3 days after co-culture and only if the bacteria were either in direct contact with or in close proximity (<5 mm) to living plant tissues. The filamentous form was observed with both wild-type and engineered Agrobacterium strains. As proximity of the bacteria to living tissue was necessary for induction, plant tissues apparently produce inductive compounds that are either very labile or have their effect only at high concentrations.  相似文献   

5.
Background and aimArbuscular mycorrhizal fungi (AMF) have an important role in plant-microbe interactions. But, there are few studies in which the combined effect of AMF with a stress factor, such as the presence of a metal, on plant species were assessed. This study investigated the effect of arbuscular mycorrhizal (AM) fungus Rhizophagus intraradices and other soil microbial groups in the presence of copper on three plant species in a microcosm experiment.MethodsTwo grass species Poa compressa and Festuca rubra and one herb species Centaurea jacea were selected as model plants in a pot-design test in which soils were artificially contaminated with copper. Treatments were bacteria (control), saprophytic fungi, protists, and a combined treatment of saprophytic fungi and protists, all in the presence or absence of the AM fungal species. After sixty days, plants were harvested and the biomass of grass and herb species and microbial respiration were measured.ResultsThe results showed almost equal above- and belowground plant biomass and microbial respiration in the treatments in the presence or absence of R. intraradices. The herb species C. jecea responded significantly to the soil inoculation with AM fungus, while grass species showed inconsistent patterns. Significant effect of AMF and copper and their interactions was observed on plant biomass when comparing contaminated vs. non-contaminated soils.ConclusionStrong effect of AMF on the biomass of herb species and slight changes in plant growth with the presence of this fungal species in copper-spiked test soils indicates the importance of mycorrhizal fungi compared to other soil microorganisms in our experimental microcosms.  相似文献   

6.
We investigated microbial interactions of aquatic bacteria associated with hyphae (the hyphosphere) of freshwater fungi on leaf litter. Bacteria were isolated directly from the hyphae of fungi from sedimented leaves of a small stream in the National Park “Lower Oder,” Germany. To investigate interactions, bacteria and fungi were pairwise co-cultivated on leaf-extract medium and in microcosms loaded with leaves. The performance of fungi and bacteria was monitored by measuring growth, enzyme production, and respiration of mono- and co-cultures. Growth inhibition of the fungus Cladosporium herbarum by Ralstonia pickettii was detected on leaf extract agar plates. In microcosms, the presence of Chryseobacterium sp. lowered the exocellulase, endocellulase, and cellobiase activity of the fungus. Additionally, the conversion of leaf material into microbial biomass was retarded in co-cultures. The respiration of the fungus was uninfluenced by the presence of the bacterium.  相似文献   

7.
Bacterial bioremediation is a widely used technique to remove or neutralize contaminants. However, the enzymatic capabilities of bacteria are limited and, consequently, recalcitrant compounds remain in the soil. Fungi can help to overcome this drawback, since their enzymatic repertoire is extensive. In this study, the diversity of viable, actively growing, filamentous fungi was explored in soils previously subjected to bioremediation with bacterial consortia from three petroleum exploitation fields. Diversity was estimated using both morphological traits and ITS rDNA sequencing. We recovered a highly diverse group of morphotypes from each field, most of them previously reported genera of fungi associated with bioremediation (Aspergillus, Paecilomyces, and Penicillium), but a high proportion (40%) of the fungal species detected have never previously been reported as being involved in degradation of hydrocarbons. To build evidence of the isolates as potential bioremediation agents, their laccase and peroxidase activities were measured in vitro; peroxidase activity was a common trend in these fungi. The detection of peroxidase activity suggests adaptation of these fungi to the residual contaminants after bacterial action. Bioaugmentation of the fungal isolates in microcosms contaminated with oily sludge resulted in higher removal of the asphaltenic fraction compared to no bioaugmented microcosms. Our method allowed us to screen for and isolate viable mycelia within a contaminated environment, a strategy efficient for our environmental protection goals.  相似文献   

8.
Knowledge on the factors that determine the composition of bacterial communities in the vicinity of roots (rhizosphere) is essential to understand plant-soil interactions. Plant species identity, plant growth stage and soil properties have been indicated as major determinants of rhizosphere bacterial community composition. Here we show that the presence of saprotrophic fungi can be an additional factor steering rhizosphere bacterial community composition and functioning. We studied the impact of presence of two common fungal rhizosphere inhabitants (Mucor hiemalis and Trichoderma harzianum) on the composition of cultivable bacterial communities developing in the rhizosphere of Carex arenaria (sand sedge) in sand microcosms. Identification and phenotypic characterization of bacterial isolates revealed clear shifts in the rhizosphere bacterial community composition by the presence of two fungal strains (M. hiemalis BHB1 and T. harzianum PvdG2), whereas another M. hiemalis strain did not show this effect. Presence of both M. hiemalis BHB1 and T. harzianum PvdG2 resulted in a significant increase of chitinolytic and (in vitro) antifungal bacteria. The latter was most pronounced for M. hiemalis BHB1, an isolate from Carex roots, which stimulated the development of the bacterial genera Achromobacter and Stenotrophomonas. In vitro tests showed that these genera were strongly antagonistic against M. hiemalis but also against the plant-pathogenic fungus Rhizoctonia solani. The most likely explanation for fungal-induced shifts in the composition of rhizosphere bacteria is that bacteria are being selected which are successful in competing with fungi for root exudates. Based on the results we propose that measures increasing saprotrophic fungi in agricultural soils should be explored as an alternative approach to enhance natural biocontrol against soil-borne plant-pathogenic fungi, namely by stimulating indigenous antifungal rhizosphere bacteria.  相似文献   

9.
Although the role of root hairs (RHs) in nutrient uptake is well documented, their role in water uptake and drought tolerance remains controversial. Maize (Zea mays) wild-type and its hair-defective mutant (Mut; roothairless 3) were grown in two contrasting soil textures (sand and loam). We used a root pressure chamber to measure the relation between transpiration rate (E) and leaf xylem water potential (ψleaf_x) during soil drying. Our hypotheses were: (1) RHs extend root–soil contact and reduce the ψleaf_x decline at high E in dry soils; (2) the impact of RHs is more pronounced in sand; and (3) Muts partly compensate for lacking RHs by producing longer and/or thicker roots. The ψleaf_x(E) relation was linear in wet conditions and became nonlinear as the soils dried. This nonlinearity occurred more abruptly and at less negative matric potentials in sand (ca. −10 kPa) than in loam (ca. −100 kPa). At more negative soil matric potentials, soil hydraulic conductance became smaller than root hydraulic conductance in both soils. Both genotypes exhibited 1.7 times longer roots in loam, but 1.6 times thicker roots in sand. No differences were observed in the ψleaf_x(E) relation and active root length between the two genotypes. In maize, RHs had a minor contribution to soil–plant hydraulics in both soils and their putative role in water uptake was smaller than that reported for barley (Hordeum vulgare). These results suggest that the role of RHs cannot be easily generalized across species and soil textures affect the response of root hydraulics to soil drying.

Root hairs of maize do not show evident contribution to root growth, water uptake, and soil–plant hydraulics, whereas soil textures affect the response of root hydraulics to soil drying.  相似文献   

10.
Very little is known about the influence of bacterial-fungal ecological interactions on polycyclic aromatic hydrocarbon (PAH) dissipation in soils. Fusarium solani MM1 and Arthrobacter oxydans MsHM11 can dissipate PAHs in vitro. We investigated their interactions and their effect on the dissipation of three PAHs—phenanthrene (PHE), pyrene (PYR) and dibenz(a,h)anthracene (DBA)—in planted microcosms, in sterile sand or non-sterile soil. In sterile sand microcosms planted with alfalfa, the two microbes survived and grew, without any significant effect of co-inoculation. Co-inoculation led to the dissipation of 46 % of PHE after 21 days. In soil microcosms, whether planted with alfalfa or not, both strains persisted throughout the 46 days of the experiment, without any effect of co-inoculation or of alfalfa, as assessed by real-time PCR targeting taxon-level indicators, i.e. Actinobacteria 16S rDNA and the intergenic transcribed spacer specific to the genus Fusarium. The microbial community was analyzed by temporal temperature gradient electrophoresis and real-time PCR targeting bacterial and fungal rDNA and PAH-ring hydroxylating dioxygenase genes. These communities were modified by PAH pollution, which selected PAH-degrading bacteria, by the presence of alfalfa and, concerning the bacterial community, by inoculation. PHE and PYR concentrations significantly decreased (91 and 46 %, respectively) whatever the treatment, but DBA concentration significantly decreased (30 %) in planted and co-inoculated microcosms only.  相似文献   

11.
A simple initial screening procedure for selecting strains of white-rot fungi with potential for use in bioremediation of contaminated sites is described. Besides the ability to degrade low molecular weight PAHs, isolates were screened for their growth rate on straw-based agar media, their potential to tolerate high concentrations of phenanthrene and their ability to out-grow the cellulolytic fungus Trichoderma harzianum on straw agar plates. Results from simple in vitro tests were correlated with the ability of the different strains to degrade PAHs in sand microcosms. It was found that fungal growth rate on straw-based agar media in the presence of phenanthrene correlated well with the ability of the different fungi to degrade PAHs in sand microcosms. Whereas growth rate on straw-based agar plates per se was indicative of the ability of white-rot fungi to establish in the presence of a competing fungus, it was a poor indicator of the fungus’ ability to degrade PAHs.  相似文献   

12.
13.
The biofilms growing in the first compartments of two rotating biological contactors used to treat municipal wastewater were examined by light and electron microscopy. The biofilms were found to contain a complex and varied microbial community that included filamentous and unicellular bacteria, protozoa, metazoa, and (possibly) bacteriophage. The predominant microorganism among these appeared to be a filamentous bacterium that was identical to Sphaerotilus in both morphological and ultrastructural characteristics. It was possible to isolate a Sphaerotilus-like bacterium from each contactor. Both the Sphaerotilus filaments and the wide variety of unicellular bacteria present tended to contain poly-β-hydroxybutyrate inclusions, a probable indication that these organisms were removing carbon from the wastewater and storing it. The microbial population of the biofilms appeared to be metabolically active, as evidenced by the presence of microcolonies and dividing cells.  相似文献   

14.
Effects of oil spills on microbial heterotrophs in Antarctic soils   总被引:7,自引:2,他引:5  
Oil spillage on the moist coastal soils of the Ross Sea region of Antarctica can impact on populations of microbial heterotrophs in these soils, as determined by viable plate counts and a most probable number technique. Elevated numbers of culturable hydrocarbon degraders, bacteria and fungi were detected in surface and subsurface soils from oil-contaminated sites, compared with nearby control sites. Culturable yeasts were not detected in soil from coastal control sites, yet reached >105 organisms g-1 dry weight in contaminated soils. The presence of hydrocarbons in soils resulted in a shift in the genera of culturable filamentous fungi. Chrysosporium dominated control soils, yet Phialophora was more abundant in oil-contaminated soils. Hydrocarbon degraders are most likely bacteria; however, fungi could play a role in degradation of hydrocarbons or their metabolites. Depleted levels of nitrate detected in some contaminated soils and decreased pH may be the result of growth of hydrocarbon degraders. Numbers and diversity of culturable microbes from Antarctic soil varied depending on whether a pristine site or a human-impacted (in this case, by fuel spills) site is studied.  相似文献   

15.
The relative importance of roots and AM-fungi on soil physical processes was investigated by controlling the presence of roots and AM fungi in pot experiments using a mycorrhiza-defective tomato mutant and a wild-type tomato (Solanum lycopersicum L.). Root-Zone and Bulk Soil sections were established by splitting pots into two lengthwise halves using a nylon mesh that contained roots whilst allowing the free movement of fungal hyphae. Post-incubation microbial populations and fungal biomass were measured and related to soil stability, pore structure and water repellency. Unplanted controls consistently had the least fungal biomass, fatty acids, water-stable aggregates (WSA) and water repellency. Wild-type-planted treatments had significantly more WSA than mycorrhiza-defective treatments (P?<?0.01). Fluctuations in water content induced by transpiration caused significant changes in soil pore structure, measured using high-resolution X-Ray computer tomography. Porosity and mean pore size increased in soil aggregates from planted treatments, which had larger more heterogeneous pores than those in the unplanted soils. AM fungi accentuated soil stability. However, changes were not linked to repellency and fungal biomass. The presence of plants, regardless of AM fungi, appears to have the greatest impact on increasing soil stability.  相似文献   

16.
It is known that plasmid DNA and linear duplex DNA molecules adsorb to chemically purified mineral grains of sand and to particles of several clay fractions. It seemed desirable to examine whether plasmid DNA would also adsorb to nonpurified mineral materials taken from the environment and, particularly, whether adsorbed plasmid DNA would be available for natural transformation of bacteria. Therefore, microcosms consisting of chemically pure sea sand plus buffered CaCl2 solution were compared with microcosms consisting of material sampled directly from a groundwater aquifer (GWA) plus groundwater (GW) with respect to the natural transformation of Acinetobacter calcoaceticus by mineral-associated DNA. The GWA minerals were mostly sand with inorganic precipitates and organic material plus minor quantities of silt and clay (illite and kaolinite). The amount of plasmid DNA which adsorbed to GWA (in GW) was about 80% of the amount which adsorbed to purified sand (in buffered CaCl2 solution). Plasmid DNA adsorbed on sand transformed A. calcoaceticus significantly less efficiently than did plasmid DNA in solution. In contrast, the transformation by sand-adsorbed chromosomal DNA was as high as that by DNA in solution. In GWA/GW microcosms, the efficiency of transformation by chromosomal DNA was similar to that in sand microcosms, whereas plasmid transformation was not detectable. However, plasmid transformants were found at a low frequency when GWA was loaded with both chromosomal and plasmid DNA. Reasons for the low transformation efficiency of plasmid DNA adsorbed to mineral surfaces are discussed. Control experiments showed that the amounts of plasmid and chromosomal DNA desorbing from sand during incubation with a cell-free filtrate of a competent cell suspension did not greatly contribute to transformation in sand microcosms, suggesting that transformation occurred by direct uptake of DNA from the mineral surfaces. Taken together, the observations suggest that plasmid DNA and chromosomal DNA fragments which are adsorbed on mineral surfaces in a sedimentary or soil habitat may be available (although with different efficiencies for the two DNA species) for transformation of a naturally competent gram-negative soil bacterium.  相似文献   

17.
The hypothesis that the population size of introduced bacteria is affected by habitable pore space was studied by varying moisture content and bulk density in sterilized, as well as in natural loamy sand and silt loam. The soils were inoculated withRhizobium leguminosarum biovartrifolii and established and maintained at soil water potentials between –5 and –20 kPa (pF 1.7 and 2.3). Rhizobial cells were enumerated when population sizes were expected to be more or less stable. In sterilized soils, the rhizobial numbers were not affected or decreased only slightly when water potentials increased from –20 to –5 kPa. In natural soils, the decrease in rhizobial numbers with increasing water potentials was more pronounced. Bulk density had only minor effects on the population sizes of rhizobia or total bacteria. Soil water retention curves of both soils were used to calculate volume and surface area of pores from different diameter classes, and an estimation of the habitable pore space was made. Combining these values of the theoretical habitable pore space with the measured rhizobial numbers showed that only 0.37 and 0.44% of the habitable pore space was occupied in the sterilized loamy sand and silt loam, respectively. The situation in natural soil is more complicated, since a whole variety of microorganisms is present. Nevertheless, it was suggested that, in general, pore space does not limit proliferation and growth of soil microorganisms.  相似文献   

18.
The attachment of microorganisms onto biotic surfaces to form biofilm structures on the support media of a biofilter has great impact on biodegradation systems. This study examined the composition of the microbial community that developed on grape seeds (GS) used as support media in methanol degradation biofilters. They were analyzed using conventional microbiology techniques and API galleries. Analysis of microbial counts showed that, in GS before methanol exposure, bacteria and filamentous fungi were predominant over yeasts. In contrast, GS exposed to methanol exhibited more bacteria and yeasts than fungi. Most of the Gram-negative bacteria were the Pseudomonas genus, Bacillus staerothermophilus, Bacillus amyloliquefaciens, and Bacillus pumilus. Rhodotorula mucilaginosa was the primary yeast found. The filamentous fungi Aspergillus sp. Cladosporium cladosporioides, Fusarium sp., and Alternaria sp. were also detected. No Gram-positive bacteria growth was found on GS exposed to methanol. Using scanning electron microscopy, biofilm formation on the GS was examined to reveal the presence of both prokaryotic and eukaryotic microorganisms as biomass accumulation was visible on the seeds. Seeds exposed to methanol for 90 days showed a mature biofilm with cuticle and epidermal layer decline, as well as biofilm dissolution into grape seed integuments.  相似文献   

19.
Antagonistic bacteria represent promising biocontrol agents for improving forest production in seedling nurseries or forest soils. The fate of an introduced mer/luc-tagged antagonistic Pseudomonas fluorescens 31K3 was monitored in the rhizosphere of silver birch (Betula pendula) seedlings grown in microcosms containing forest humus or nursery peat. The inoculated strain (10(8) cfu g(-1) soil) was unable to establish in significant numbers in either soil type and turned nonculturable in humus. Detection in both soils was possible only via luminescence of enrichment cultures 80 days post-inoculation. Despite low P. fluorescens survival, inoculation had a positive effect on seedling growth. Limited impact of inoculation on the indigenous microbial communities was identified following analyses of respiration and denitrification potential, community-level physiological profiles and molecular fingerprinting of fungi and eubacteria, and Pseudomonas community structures. The minor changes observed in the indigenous microbial communities, including mycorrhiza development, were not consistent between humus and peat growth substrates. It was concluded that the rhizosphere-related microbial communities developed in both of these highly organic soil systems are highly buffered against introduction of foreign bacteria.  相似文献   

20.
Cell‐to‐cell channels appear to be indispensable for successful multicellular organization and arose independently in animals, plants and fungi. Most of the fungi obtain nutrients from the environment by growing in an exploratory and invasive manner, and this ability depends on multicellular filaments known as hyphae. These cells grow by tip extension and can be divided into compartments by cell walls that typically retain a central pore that allows intercellular transport and cooperation. In the major clade of filamentous Ascomycota, integrity of this coenocytic organization is maintained by Woronin body organelles, which function as emergency patches of septal pores. In this issue of Molecular Microbiology, Bleichrodt and co‐workers show that Woronin bodies can also form tight reversible associations with the pore and further link this to variation in levels of compartmental gene expression. These data define an additional modality of Woronin body‐dependent gatekeeping. This commentary focuses on the implications of this work and the potential role of different modes of pore gating in controlling the growth and development of fungal tissues.  相似文献   

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