Developing biological indicators from diverse data: The Potomac Basin-wide Index of Benthic Integrity (B-IBI)

A Basin-wide Index of Benthic Integrity (B-IBI) was developed to uniformly assess aquatic ecosystem health of non-tidal, wadeable streams in the multi-jurisdictional Potomac River basin (US). Multiple datasets were merged and used to identify stream classes and discriminating biological metrics. The index (aggregated metric scores) accurately identified 95% of impaired sites. A jackknife cross-validation procedure confirmed the accuracy of the B-IBI. B-IBI assessments generally compare favorably to basin states’ assessments derived from the same data. A habitat quality matrix which includes an indicator of anthropogenic alterations and disturbances is recommended. The Potomac B-IBI is more useful than existing state-specific indexes for stream health comparisons across jurisdictional boundaries and basin-wide. The Potomac B-IBI can improve understanding of water quality issues in the basin and enhance the abilities of water quality managers to make well-informed decisions concerning the basin's non-tidal waters.     

The application of chemical and biological multi-metric models to a small urban stream for ecological health assessments

Nutrient or/and organic pollutions have been used as one of the key factors influencing the stream health, so research approaches were frequently focused on chemical analysis rather and biological analysis. Our objective of the present study was to diagnose the chemical and biological stream health using chemical multi-metric model of nutrient pollution index (NPI) and biological multi-metric fish model of the index of biotic integrity (IBI), respectively in an urban stream. Seven years dataset from 2008 to 2014 were used for the health assessments. The nutrients regime (TN, TP), sestonic chlorophyll, total suspended solids (TSS), electrical conductivity, BOD, and COD showed a typical polluted stream with large temporal and spatial fluctuations due to variations of Asian monsoon rain. The analysis of fish trophic guilds and fish tolerance guilds showed that omnivore fish species and tolerant species were dominated the community and the proportions were directly determined by water chemistry (nutrient and organic matters). Chemical model of NPI showed “poor-very poor health condition” by the criteria of the model and showed same results with the biological model of fish IBI. The degradation of the stream health was mainly due to massive effluents from the wastewater treatment plants. Overall, our data suggest that the multi-metric chemical and biological models may be used as a key tool diagnosing the stream health condition in an urban stream.     

Restoring Stream Ecosystems: Lessons from a Midwestern State

Reach‐scale stream restorations are becoming a common approach to repair degraded streams, but the effectiveness of these projects is rarely evaluated or reported. We surveyed governmental, private, and nonprofit organizations in the state of Indiana to determine the frequency and nature of reach‐scale stream restorations in this midwestern U.S. state. For 10 attempted restorations in Indiana, questionnaires and on‐site assessments were used to better evaluate current designs for restoring stream ecosystems. At each restoration site, habitat and water quality were evaluated in restored and unrestored reaches. Our surveys identified commonalities across all restorations, including the type of restoration, project goals, structures installed, and level of monitoring conducted. In general, most restorations were described as stream‐relocation projects that combined riparian and in‐stream enhancements. Fewer than half of the restorations conducted pre‐ or post‐restoration monitoring, and most monitoring involved evaluations of riparian vegetation rather than aquatic variables. On‐site assessments revealed that restored reaches had significantly lower stream widths and greater depths than did upstream unrestored reaches, but riparian canopy cover often was lower in restored than in unrestored reaches. This study provides basic information on midwestern restoration strategies, which is needed to identify strengths and weaknesses in current practices and to better inform future stream restorations.     

Ecological indicators for stream restoration success

Exploitation of freshwater resources is essential for sustenance of human existence and alteration of rivers, lakes and wetlands has facilitated economic development for centuries. Consequently, freshwater biodiversity is critically threatened, with stream ecosystems being the most heavily affected. To improve the status of freshwater habitats, e.g. in the context of the European Water Framework Directive and the US Clean Water Act, it is essential to implement the most effective restoration measures and identify the most suitable indicators for restoration success. Herein, several active and passive bioindication approaches are reviewed in light of existing legal frameworks, current targets and applicable implementation of river restoration. Such approaches should move from the use of single biological indicators to more holistic ecological indicators simultaneously addressing communities, multiple life stages and habitat properties such as water quality, substrate composition and stream channel morphology. The proposed Proceeding Chain of Restoration (PCoR) can enable the integration of natural scientific, political and socioeconomic dimensions for restoration of aquatic ecosystems and associated services. Generally, an analysis that combines target species-based active bioindication with community-based passive bioindication and multivariate statistics seems to be most suitable for a holistic evaluation of restoration success, as well as for the monitoring of stream ecosystem health. Since the response of biological communities to changing environmental conditions can differ between taxonomic groups and rivers, assessments at the ecosystem scale should include several levels of biological organisation. A stepwise evaluation of the primary factors inducing disturbance or degradation is needed to integrate increasing levels of complexity from water quality assessments to the evaluation of ecological function. The proposed PCoR can provide a step-by-step guide for restoration ecologists, comprising all planning steps from the determination of the conservation objectives to the use of ecological indicators in post-restoration monitoring.     

Riparian monitoring using 2-cm GSD aerial photography

Riparian monitoring is a key aspect of sustainable resource management and is mandated by US federal law for federal land management agencies. However, it is an endeavor hampered by rising manpower costs and time-consuming travel and methods. These limitations tend to reduce sampling intensity per reach of stream and limit monitoring to the larger waterways of management units—limitations that reduce the accuracy of inferences derived from resulting data with consequential reductions in the effectiveness of landscape-level resource management. We tested the utility of low-altitude, high-resolution, intermittent aerial digital imagery for relatively inexpensive, high-intensity sampling in a watershed inhabited by the Lahonton Cutthroat trout, a species listed as threatened under provisions of the US Endangered Species Act. Measurements gleaned from the aerial imagery included late-summer open water width, number and location of late-summer dry channels, widths of riparian areas and willow coverage. All measurements were georeferenced to allow spatial data display. Riparian proper functioning condition (PFC) was assessed from the imagery by a USDI, Bureau of Land Management team. These assessments were compared to similar on-the-ground assessments made during the preceding year. PFC assessments from aerial photography were made using an average 4 staff hours per stream compared to an estimated 36 staff hours per stream for ground PFC assessments. The two assessment methods yielded roughly comparable results. We conclude that riparian-condition assessments from 2-cm GSD digital aerial imagery allowed increased sample intensity (and thus increased inference accuracy) and that it did so in our study at a cost less than half that of conventional ground-based methods. We recommend the acquisition and analysis of 2-cm GSD digital aerial imagery be further trialed for its utility and cost efficiency in ecological monitoring of riparian systems.     

Large-scale climate change vulnerability assessment of stream health

Freshwater streams are critical resources that provide multiple benefits to humans and aquatic biota alike. As climate changes, it is projected that changes to the hydrological cycle and water temperatures will affect individual biota and aquatic ecosystems as a whole. The goal of this study was to determine the extent of climate change impacts on stream ecosystems as represented by four commonly used stream health indicators (Ephemeroptera, Plecoptera, and Trichoptera taxa (EPT), Family Index of Biotic Integrity (FIBI), Hilsenhoff Biotic Index (HBI), and fish Index of Biotic Integrity (IBI)). Seven watersheds in Michigan were selected based on stream thermal regimes. The Soil and Water Assessment Tool was used to simulate streamflow and pollutant loads. Important variables for each thermal class were selected using a Bayesian variable selection method and used as inputs to adaptive neuro-fuzzy inference systems models of EPT, FIBI, HBI, and IBI. Finally, an ensemble of climate models from the Coupled Model Intercomparison Project Phase 5 were used to determine the impacts of climate on the stream health in 2020–2040 compared to 1980–2000. The risk of declining stream health was determined using cumulative distribution functions. A stream temperature regression model was also developed to assess potential changes in stream thermal regimes, which could cause shifts in composition of aquatic communities. Several flow regime variables, including those related to flow variability, duration of extreme events, and timing were mainly affected by changing climate. At the watershed scale, most indicators were relatively insensitive to changing climate and the magnitude of stream health decline was low. However, at the reach scale, there are many instances of high risk and large magnitude of declines in the stream health indicators. At the same time, several streams experienced changes in thermal class, mostly transitioning from cold-transitional and cool streams to warm streams. This research demonstrated the applicability of the stream health modeling process in performing a climate change impacts assessment.     

Ten Years of the Relative Risk Model and Regional Scale Ecological Risk Assessment

It has been 10 years since the publication of the relative risk model (RRM) for regional scale ecological risk assessment. The approach has since been used successfully for a variety of freshwater, marine, and terrestrial environments in North America, South America, and Australia. During this period the types of stressors have been expanded to include more than contaminants. Invasive species, habitat loss, stream alteration and blockage, temperature, change in land use, and climate have been incorporated into the assessments. Major developments in the RRM have included the extensive use of geographical information systems, uncertainty analysis using Monte Carlo techniques, and its application to retrospective assessments to determine causation. The future uses of the RRM include assessments for forestry and conservation management, an increasing use in invasive species evaluation, and in sustainability. Developments in risk communication, the use of Bayesian approaches, and in uncertainty analyses are on the horizon.     

A comparison of health assessment approaches for evaluating the effects of contaminant-related stress on fish populations

Various methods are available for investigating the effects of environmental conditions or stress on fish ranging from assessments at the individual level to the population and community level. Each method, however, has limitations and advantages, and the type of method used influences the interpretation of stressor effects on fish health. We compared and evaluated three methods for investigating the effects of contaminants on fish health for populations in a stream receiving a variety of industrial effluents including PCBs, heavy metals (primarily mercury), and chlorine. These methods are: (1) individual bioindicator variables including measurements of biochemical, physiological, histopathological, and organismal-level responses, (2) statistically based integrative indices based on multivariate responses, and (3) integrative ecologically relevant measurements such as population and community-level responses. Many of the individual-level measurements reflect biochemical and physiological conditions and are therefore short-term response indicators of stress. Use of several individual variables in multivariate discriminant analysis allows a more integrative approach for evaluating response of fish to stressors. Community- and population-level measurements integrate the responses to a variety of environmental conditions and therefore may be less reflective of contaminant-induced stress. The three methods used together provide the best strategy for evaluating fish health in order that environmentally sound decisions can be made regarding the implications of contaminant-related stress on aquatic ecosystems.Managed by Martin Marietta Energy Systems, Inc., under contract DE-AC05-840R21400 with the U.S. Department of Energy.     

Efficacy of population size structure as a bioassessment tool in freshwaters

Bioassessments are used to measure system health and assess disturbance. While fish-based freshwater bioassessments are cost-effective and perform well in speciose systems, such bioassessments remain difficult to implement in species-poor Mediterranean regions. Population size structure metrics may provide meaningful biological information where depauperate communities preclude the richness and composition measures generally used. We focus our assessments of population size structure responses to anthropogenic perturbation on one of the most widespread native stream fish (Squalius laietanus). We explore a number of population size statistics as metrics for a Mediterranean region, where current bioassessments perform poorly. Our sampling encompassed 311 sites across Catalonia (NE Spain) where we characterized anthropogenic perturbation using a summary of impacts, including local data on stream condition and landscape indicators of degradation, via a principal component analysis. Anthropogenic perturbation in streams was collinear with altitudinal gradients and highlights the importance of appropriate statistical techniques. Of the population size structure metrics explored, average length was the most sensitive to anthropogenic perturbation and generally increased along the disturbance gradient. Although we expected to find consistent changes in variance, kurtosis, and skewness, the observed relationships were weak. River basin mediated responses suggest the importance of environmental landscape factors. The unexpected increases of mean S. laietanus body size with anthropogenic perturbation, strong effects of river basin, collinearity with spatial gradients and the species-specific nature of responses preclude the direct application of size structure in freshwater bioassessments. Although its application in fish-based freshwater bioassessments appears difficult, population size structure can provide insights in species-specific applications and management.     

A novel bacterial community index to assess stream ecological health

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Influence of stream geomorphic condition on fish communities in Vermont, U.S.A.

1. Evaluations of stream geomorphic condition may increase our understanding of the composite effects of human‐induced habitat change on fish communities. Using systematic sampling of 44 reaches spread across 26 rivers in Vermont from 2002 through 2004, we tested the hypothesis that stream reaches in reference geomorphic condition would support fish assemblages that differed in diversity and productivity from fish communities found in reaches of poorer geomorphic condition. 2. At each study reach, we sampled the fish community, identified the morphological unit according to common stream classification systems and then evaluated the extent of deviation from reference geomorphic condition using a regionally adapted geomorphic assessment methodology. 3. We used principal component analysis (PCA) and linear regression to build exploratory models linking stream geomorphic condition to fish community characteristics. 4. Our results suggest that geomorphic condition significantly influences fish community diversity, productivity and condition. Geomorphic condition was a significant factor in all of our fish community models. In conjunction with additional reach characteristics, geomorphic condition explained up to 31% of the total variance observed in models for species diversity of fish communities, 44% of the variance in assemblage biomass and 45% of the variance in a regional index of biotic integrity. 5. Our work builds on single‐species evidence that geomorphic characteristics represent important local‐scale fish‐habitat variables, showing that stream geomorphic condition is a dominant factor affecting entire fish communities. Our results enhance our understanding of the hierarchy of factors that influences fish community diversity and organisation and support the use of geomorphic condition assessments in stream management.     

Louisiana waterthrushes (Seiurus motacilla) and habitat assessments as cost-effective indicators of instream biotic integrity

1. Benthic stream animals, in particular macroinvertebrates, are good indicators of water quality, but sampling can be laborious to obtain accurate indices of biotic integrity. Thus, tools for bioassessment that include measurements other than macroinvertebrates would be valuable additions to volunteer monitoring protocols. 2. We evaluated the usefulness of a stream‐dependent songbird, the Louisiana waterthrush (waterthrush, Seiurus motacilla) and the Environmental Protection Agency Visual Habitat Assessment (EPA VHA) as indicators of the macrobenthos community in headwater streams of the Georgia Piedmont, U.S.A. We sampled macrobenthos, surveyed waterthrushes and measured habitat characteristics along 39 headwater reaches across 17 catchments ranging from forested to heavily urbanised or grazed by cattle. 3. Of the indicators considered, waterthrush occupancy was best for predicting relative abundances of macrobenthic taxa, while the EPA VHA was best for predicting Ephemeroptera–Plecoptera–Trichoptera (EPT) richness. Individual components of EPA VHA scores were much less useful as indicators of EPT richness and % EPT when compared with the total score. Waterthrushes were found along streams with higher % EPT, a lower Family Biotic Index (FBI) values and greater macrobenthos biomass. 4. While macroinvertebrates remain one of the most direct indicators of stream water quality, stream bird surveys and reach‐scale habitat assessments can serve as cost‐effective indicators of benthic macroinvertebrate communities. Using stream‐dependent birds as an early warning signal for degradation of stream biotic integrity could improve the efficacy of catchment monitoring programmes in detecting and identifying perturbations within the catchment.     

Effects of riparian vegetation width and substrate type on riffle beetle community structure

Riffle beetle community structure is influenced by the preservation condition of stream riparian vegetation. Though, the width of riparian vegetation required to ensure conservation of stream insect communities is still controversial. Effects of alterations in riparian vegetation widths on stream insect community structure can be overcame by other environmental variables, like substrate type, hindering accurate assessments. We tested the effects of different riparian vegetation widths (>40, 30–15, 15–5 and <5 m) along with different substrate types (inorganic and organic) on riffle beetle community structure in southern Brazilian 4th‐ to 5th‐order streams. Riparian buffer widths and substrate types influenced riffle beetle community structure, but no interaction between them was observed. Reduced riparian vegetation widths downstream were associated with changes in riffle beetle dominant genera (Macrelmis predominated only in streams with narrowest riparian widths). Additionally, communities in organic substrates had lower equitability and different dominant genera (Hexacylloepus and Heterelmis) than inorganic ones. Our results showed that reductions in riparian vegetation were associated with water pollution and changes in riffle beetle community structure, suggesting that buffer strips narrower than 5 m are not adequate to maintain environmental integrity of southern Brazilian streams. These results have special importance for the conservation of stream insects in Brazil, as reductions up to less than 5 m in stream banks of small properties are allowed by the new Brazilian Forest Code, independently of stream order.     

Freshwater ecosystem structure–function relationships: from theory to application

1. In this issue we aimed to answer the questions: (i) under what circumstances are functional variables better than structural ones for assessing ecosystem health? and (ii) are there good indicators of change in ecological functioning along perturbation gradients?
2. Of the numerous functional indicators tested in this issue, several show a response to anthropogenic stress and could be included in assessments of ecosystem health and integrity in running waters.
3. In three of eight studies, function showed a stronger response to anthropogenic stress than structure, whereas one study showed a response in structure and not function, and four studies showed responses in both structure and function. Thus structure alone could not detect all types of impairment and functional aspects should also be included and further developed for assessing running-water ecosystem health and integrity. Functional variables may be especially useful in situations where there is a stronger response among organisms not usually included in stream assessment (e.g. fungi and bacteria) than the commonly used invertebrate, macrophytes and fish indicators.
4. Leading research questions related to the use of functional indicators in running waters include: (i) how large is natural and operator-induced variation for functional indicators? (ii) how small of an effect size (delta) can be detected using structural versus functional indicators? and (iii) how do we efficiently improve theories as well as predictive ability for functional measures to assess the effects of anthropogenic stressors?
5. To advance the use of functional indicators in applied running-water studies, we need to supplement the approach of using large-scale datasets and correlation with ecosystem manipulations.     

NESTED AUTOMATED RIBOSOMAL INTERGENIC SPACER ANALYSIS: A RAPID AND ACCURATE METHOD FOR COMPARISON OF BACTERIAL COMMUNITY COMPOSITION

Nested automated ribosomal intergenic spacer analysis (ARISA) was used to examine the community structure of epilithic biofilms in freshwater streams experiencing different levels of human impact. This molecular fingerprinting technique generated reproducible profiles of bacterial community structure that varied significantly between stream sites. Nested ARISA was determined to be a cost-effective, high-throughput approach to assess bacterial community composition from very small sample volumes, requiring little sampling effort and without the need for taxonomic identification of individual organisms. In combination with multidimensional scaling, nested ARISA provides a rapid and sensitive method to carry out complex analyses of bacterial community structure.

PRACTICAL APPLICATIONS

Nested automated ribosomal intergenic spacer analysis (ARISA) provides a high-throughput molecular method with which to screen large numbers of environmental samples for differences in microbial community structure. This sensitive approach benefits assessments from small sample volumes or environments exhibiting reduced microbial biomass (both aquatic and terrestrial). Differences in bacterial community structure (obtained from ARISA profiles) could be used to characterize the impact of anthropogenic disturbance on freshwater systems, analogous to the current use of macroinvertebrate indicators of freshwater ecological health.     

A comparative study of the sessile,filter-feeding ciliates of several small streams

Artificial substrates, consisting of strips of nylon cloth, were used to sample sessile, filter-feeding ciliates at eleven stream sites. These ciliates were common (61 % of samples) and frequently abundant (mean = 95 cm^?2). Populations varied widely, even within stream sites, and mean abundance was not related to subjective assessments of the sites. Permanent rural streams and streams below reservoirs, which have relatively stable flow regimes, had a peritrich fauna dominated byVorticella campanula along withCarchesium polypinum andV. striata. Urban and intermittent streams, with less stable flow regimes, showed an increasing number of peritrichs with non-contractile stalks, particularlyEpistylis plicatilis. The commonness and diversity of peritrichs was positively related to aufwuchs stability.     

Using Fish Communities to Assess Streams in Romania: Initial Development of an Index of Biotic Integrity*

Multimetric biotic indices increasingly are used to complement physicochemical data in assessments of stream quality. We initiated development of multimetric indices, based on fish communities, to assess biotic integrity of streams in two physiographic regions of central Romania. Unlike previous efforts to develop such indices for European streams, our metrics and scoring criteria were selected largely on the basis of empirical relations in the regions of interest. We categorised 54 fish species with respect to ten natural-history attributes, then used this information to compute 32 candidate metrics of five types (taxonomic, tolerance, abundance, reproductive, and feeding) for each of 35 sites. We assessed the utility of candidate metrics for detecting anthropogenic impact based on three criteria: (a) range of values taken, (b) relation to a site-quality index (SQI), which incorporated information on hydrologic alteration, channel alteration, land-use intensity, and water chemistry, and (c) metric redundancy. We chose seven metrics from each region to include in preliminary multimetric indices (PMIs). Both PMIs included taxonomic, tolerance, and feeding metrics, but only two metrics were common to both PMIs. Although we could not validate our PMIs, their strong association with the SQI in each region suggests that such indices would be valuable tools for assessing stream quality and could provide more comprehensive assessments than the traditional approaches based solely on water chemistry.     

An Assessment of a Small Urban Stream Restoration Project in Northern California

Stream restoration projects have become increasingly common, and the need for systematic post‐project evaluation, particularly for small‐scale projects, is evident. This study describes how a 70‐m restored reach of a small urban stream, Baxter Creek (in Poinsett Park, El Cerrito, California), was quickly and inexpensively evaluated using habitat, biological, and resident‐attitude assessments. The restoration involved opening a previously culverted channel, planting riparian vegetation, and adding in‐stream step‐pool sequences and sinuosity. Replicated benthic macroinvertebrate samples from the restored site and an upstream unrestored site were compared using several metrics, including taxa richness and a biotic index. Both biological and habitat quality improved in the restored compared with the unrestored section. However, when compared with a creek restored 12 years before, habitat condition was of lower quality in the recently restored creek. A survey of the neighborhood residents indicated that, overall, they were pleased with the restored creek site. The approach used in this demonstration project may be applicable to other small‐scale evaluations of urban stream restorations.     

Co‐varying impacts of land use and non‐native brown trout on fish communities in small streams

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基于树叶凋落物分解速率的溪流生态系统健康评价——以广东横石水河为例

用Gessner等提出的树叶凋落物分解模式对横石水河的功能完整性和生态系统健康进行评价,对比了藜蒴和荷木2个树种的树叶凋落物在横石水河各污染样点和未受污染样点的分解速率.结果表明：藜蒴和荷木树叶凋落物在研究区污染样点的分解速率均显著低于清洁样点（P<0.05）;根据Gessner模式,各污染样点的环境得分均为0,而各清洁样点的环境得分均为2,表明横石水河污染河段的健康状态已受到严重破坏.研究区生态系统健康的生物学评价与水质分析结果一致,表明树叶凋落物分解模式是一个合适的评价河流状态的指数.