Estimation of the evolutionary stability of the Influenza A virus: Prediction of variable regions in the domain structure of the M1 protein

Influenza virus is a human pathogen that is responsible for several pandemics with high death rates. Two programs were written for the statistical analysis of the coding regions of genes from extensive samples of Influenza A virus. While inner viral proteins appeared to be evolutionarily stable, surface antigens and the NS1 nonstructural protein are highly variable. Using programs to predict the evolutionarily variable regions inside the M1 protein sequence it was shown that the N-domain is the most conserved domain while the M- and C-domains are the most variable. In addition, the C-domain was shown to be the most unfolded one, according to prediction by the DISOPRED algorithm and, thus, possesses the most structural plasticity.     

The relationship between homozygosity and the frequency of the most frequent allele

Homozygosity is a commonly used summary of allele-frequency distributions at polymorphic loci. Because high-frequency alleles contribute disproportionately to the homozygosity of a locus, it often occurs that most homozygotes are homozygous for the most frequent allele. To assess the relationship between homozygosity and the highest allele frequency at a locus, for a given homozygosity value, we determine the lower and upper bounds on the frequency of the most frequent allele. These bounds suggest tight constraints on the frequency of the most frequent allele as a function of homozygosity, differing by at most 14 and having an average difference of 23 - pi(2)/18 approximately 0.1184. The close connection between homozygosity and the frequency of the most frequent allele-which we illustrate using allele frequencies from human populations-has the consequence that when one of these two quantities is known, considerable information is available about the other quantity. This relationship also explains the similar performance of statistical tests of population-genetic models that rely on homozygosity and those that rely on the frequency of the most frequent allele, and it provides a basis for understanding the utility of extended homozygosity statistics in identifying haplotypes that have been elevated to high frequency as a result of positive selection.     

Gender identification of shovelnose sturgeon using ultrasonic and endoscopic imagery and the application of the method to the pallid sturgeon

Monthly sampling of shovelnose sturgeon Scaphirhynchus platorynchus , a biological surrogate for the endangered pallid sturgeon Scaphirhynchus albus , was conducted to develop a multi‐seasonal profile of reproductive stages. Data collected included histological characteristics of gonads from wild caught fish and laboratory and field ultrasonic and endoscopic images. These data were used to compare effectiveness of ultrasonic and endoscopic techniques at identifying gender of adult shovelnose sturgeon at different reproductive stages. The least invasive method ( i.e . ultrasound) was least effective while the most invasive ( i.e . endoscope through an abdominal incision) was the most effective at identifying shovelnose sturgeon gender. In most cases, success rate for identifying males was greater than females, with success at identifying both genders greater in more advanced reproductive stages. Concomitantly, for most months average reproductive stage was more advanced for males than females. April and May were the months with the most advanced reproductive stage, and were the months when ultrasound was most effective. Methods were also applied in the Upper Missouri River to validate their use on pallid sturgeon Scaphirhynchus albus . Ultrasound was successful at identifying pallid sturgeon gender, however, endoscopic examination through the urogenital duct was only successful at identifying pallid sturgeon gender when the urogenital duct was not opaque.     

穿孔线虫属分类研究进展(综述)

穿孔线虫属Radopholus是一类多寄主寄生的危险性植物线虫,其中以世界性危害的相似穿孔线虫R. similis为典型代表。但穿孔线虫属的分类学研究迄今仍不完善,形态描述粗糙,分子序列匮乏。本文列出穿孔线虫属的最新种类名录,归纳了27种穿孔线虫（双卵巢类型）的主要形态分类特征,并综述该属分子亲缘进化关系研究进展,为穿孔线虫属的分类和相似穿孔线虫的准确鉴定提供形态学基础和技术支持,同时也为该属线虫分类学的研究方向提出建议。     

Political aspects of the closure of the Eastern Scheldt estuary

Summary A chronological survey is given of the discussions about the aspects of the closure of the Eastern Scheldt, an estuary in the SW Netherlands (Delta Area).Delta Plans were made already before World War II. After the Disaster of 1953 the main objective was to obtain a sufficient safeguard against superfloods. The ecological losses in the Delta Area were not yet recognized. Due to the activities of action groups this aspect was put into the interest of political parties. In 1973 a special commission investigated the possibilities of a synthesis between ecology and land protection. The commission proposed to maintain a reduced tidal range in the Eastern Scheldt by means of a storm-surge barrier. In Government and Parliament this proposal was evaluated, adapted and finally accepted. Dike-raising, according to the pressure groups the most simple and cheapest way to get the necessary protection, was definitely rejected. The most important consequence of these decisions was the extra costs of 2000 million guilders.Up till now discussions are focussed on the most acceptable tidal reduction. The Parliament accepted because of financial reasons 25% reduction. The action groups advocate at most 10%.Communication nr. 173 of the Delta Institute for Hydrobiological Research.     

Exophthalmos from the standpoint of the otolaryngologist

Exophthalmos may be due to an inflammatory process or to tumor formation. Inflammatory processes are most likely to occur in children and young adults. Tumors are the most common cause of exophthalmos in adults.Since the advent of chemotherapy and the antibiotics, rarely does orbital cellulitis develop from sinal infection. Tumors causing exophthalmos are likely to be benign if they arise from the frontal sinus and malignant if they arise from the maxillary and ethmoid sinuses.     

Learned timing of motor behavior in the smooth eye movement region of the frontal eye fields

Proper timing is a critical aspect of motor learning. We report a relationship between a representation of time and an expression of learned timing in neurons in the smooth eye movement region of the frontal eye fields (FEF(SEM)). During prelearning pursuit of target motion at a constant velocity, each FEF(SEM) neuron is most active at a distinct time relative to the onset of pursuit tracking. In response to an instructive change in target direction, a neuron expresses the most learning when the instruction occurs near the time of its maximal participation in prelearning pursuit. Different neurons are most active, and undergo the most learning, at distinct times during pursuit. We suggest that the representation of time in the FEF(SEM) drives learning that is temporally linked to an instructive change in target motion, and that this may be a general function of motor areas of the cortex.     

盲蝽科昆虫的分类系统概述

依据目前已有的资料 ,概述了盲蝽科昆虫的分类系统。盲蝽科隶属于半翅目异翅亚目臭虫型的盲蝽总科 ,这在半翅目学者中意见一致。但关于盲蝽科亚科及族级水平的分类系统观点不一。最合理的为 6亚科及 8亚科的分类系统。8亚科分类系统是目前最被接受和应用的系统。     

Effect of antibiotics on the bacterial population of the rabbit caecum

The effect feeding antibiotics has on the bacterial population of the rabbit caecum was investigated. No changes in total volatile fatty acid production or total bacterial counts were observed compared with nonantibiotic treated controls. However, treatment with chlortetracycline resulted in an increase of propionate at the apparent cost of butyrate (P<0.05). Denaturing gradient gel electrophoresis analysis indicated that the two antibiotics that inhibit protein synthesis (chlortetracycline and tiamulin) exerted the most similar changes on the bacterial population structure, decreasing the diversity of the profiles. Sequence analysis of DNA from excised denaturing gradient gel electrophoresis bands was carried out. The majority of the sequences observed were most similar to bacterial sequences previously described in other gut environments, with 11% being most similar to those previously reported from the rabbit, and 95% of the sequences having 95% or greater identity to sequences already in GenBank.     

Studies on the charge isomers of arylsulfatase A

Human liver arylsulfatase A was resolved into six fractions by narrow pH range preparative isoelectric focusing. Analytical isoelectric focusing revealed that most enzyme fractions were composed of two adjacent charge isomers. Nevertheless, there was considerable enrichment of charge species which allowed a comparative study of selected properties. Except for the most cationic fraction, neuraminidase treatment converted enzyme in all fractions to the three most cationic species. The most electronegative enzyme species had the highest molecular mass being made up of 64-kDa subunits. As electronegativity decreased, there was concomitant decrease in molecular mass and increase in complexity of subunit composition. Two subunits--61 and 55 kDa--prevailed with increasing proportions of the smaller unit with loss of electronegativity. There was also an increasing amount of a 26-kDa fraction which became a substantial component of the most cationic subfraction. Only enzyme in the two fractions containing the largest and most anionic species were taken up by cultured fibroblasts at higher efficiency than unfractionated enzyme. It is suggested that processing or maturation of arylsulfatase A incurs stepwise removal of charge groups and/or peptide segments leading to smaller, less-charged enzyme species.     

Note on variability of the arteries of the lower extremities in man

The organization of the arterial bed was evaluated in the arteriograms of 253 lower extremities of subjects of a known sex and age. High origination of the a. profunda femoris from the a. iliaca ext. was observed in 0.4% of the cases; in 0.8% the a. profunda femoris arose from the transition of the a. iliaca ext. to the femoral artery. The crural segment was the most variable part of the arterial bed of the lower limbs. Most frequently, in 21.7% of the subjects, anomalies of the crural arteries were unilateral; in 4.6% they were bilateral. In 2.3%, bilaterally different anomalies were present. The a. tibialis post. is the most variable crural artery and the a. peronea is the most stable.     

A comparative analysis of the Darwin-Wallace papers and the development of the concept of natural selection

The classical theory of descent with modification by means of natural selection had no mother, but did have two English fathers, Charles Darwin (1809–1882) and Alfred Russel Wallace (1823–1913). In 1858,the Linnean Society of London published two contributions of these naturalists and acknowledged both authors as the proponents of a novel hypothesis on the driving force of organismic evolution. In the present report the most important sections of the Darwin-Wallace papers are summarized. This close reading of both publications reveals six striking differences in emphasis: Darwin and Wallace did not propose identical ideas. The species definitions of both authors are described and the further development of the concept of natural selection in wild populations is reviewed. It is shown that the contributions of A.R. Wallace, who died 90 years ago, are more significant than usually acknowledged. I conclude that natural selection's lesser known co-discoverer should be regarded as one of the most important pioneers of evolutionary biology, whose original contributions are underestimated by most contemporary scientists.     

Bacteria and viruses of the ice-free aquatic area of the Barents Sea at the beginning of polar night

The most massive components of the microplankton were studied in the open sea waters for the first time at the end of the autumn season. It has been found that abundance of the virio- and bacterioplankton exceeded that observed in winter in the coastal zone. Against the background of a relatively uniform distribution of bacteria, the viral abundance and the lysis-mediated bacterioplankton death rate reached the maximum values in the most cold and salty waters of the northern sea areas.     

香蕉假茎象甲卵的空间格局研究

应用多种聚集度指标研究了香蕉假茎象甲卵在香蕉园的空间分布格局 ,结果表明该虫卵在所有密度下都是聚集分布 ,聚集程度与密度不相关 ,分布的基本成份是个体群。在空间格局研究基础上提出了理论抽样数公式 ,给出了不同密度下、不同误差要求的最适抽样数。     

The autecology of the chub, Squalius cephalus (L.), of the River Lugg and the Afon Llynfi

(1) Seasonal variation in the intensity of feeding activity was demonstrated in two chub populations. Feeding activity was higher in summer and more pronounced in the young age-classes. The intensity of feeding activity was significantly correlated with temperature. (2) The diet of the total chub populations embraced a wide range of food items but vegetable material predominated. Substrate material was frequently encountered which suggested considerable feeding on the river bed. Fish were the most important animal food, by volume, in the River Lugg but Trichoptera larvae were most important in the Afon Llynfi. No remains of salmon parr or trout were found in chub stomachs but grayling were eaten. The most important prey fish, by volume, was the eel but cyprinids, especially minnows, were most important by frequency of occurrence. (3) Seasonal variation in the composition of the diet could be related to availability of food organisms but some selection was shown. Vegetable foods were most important in summer; animal foods, Trichoptera larvae in particular, were important in winter. (4) Analysis of the variation in the composition of the diet with age revealed several trends, notably a decrease in the importance of plant material, aquatic and aerial insects with age and a corresponding increase in the importance of larger prey foods such as fish, frogs and crayfish. (5) The commonly held view that chub are deleterious to salmonid stocks was examined. The absence of direct predation and the small likelihood of direct competition suggests that this view is incorrect.     

Community structure of the deep sea fishes in the northern Gulf of Aqaba,Red Sea (Osteichthyes and Chondrichthyes)

The aim of this study was to investigate the community structure of deep sea fishes in the northern Gulf of Aqaba. Deep fish traps, short lines and long lines were deployed at depth ranges from 60 to 700 m between June 2014 and May 2015. A total of 369 fish individuals belonging to 37 species in 21 families were collected. The most abundant family observed in deep fish traps and short line was the commercially important family Sparidae, whereas the most abundant family in long line catch was the commercially unimportant fish family Muraenidae. The most abundant fish species sampled by deep fish traps and shortline was Blueskin Seabream, Polysteganus coeruleopunctatus. The most abundant species in long line catch White-spotted Moray, Gymnothorax johnsoni. In fish traps and with short line, the most commonly caught species was Blueskin Seabream. White-spotted Moray was the most common long line catch. Depth distribution for 37 deep fish species and GIS maps for the two main commercial fish species Blueskin Seabream and Bigeye Hound Shark, Iago omanensis were documented.     

On the mechanism of Wolbachia-induced cytoplasmic incompatibility: confronting the models with the facts

The endocellular bacterium Wolbachia manipulates the reproduction of its arthropod hosts for its own benefit by various means, the most widespread being cytoplasmic incompatibility (CI). To date, the molecular mechanism involved in CI has not been elucidated. We examine here three different CI models described in previous literature, namely, the "lock-and-key", "titration-restitution" and "slow-motion" models. We confront them with the full range of CI patterns discovered so far, including the most complex ones such as multiple infections, asymmetrical and partial compatibility relationships and the existence of Wolbachia variants that can rescue the host from CI but not induce it. We conclude that the lock-and-key model is the most parsimonious of the models and fits the observations best. The two other models cannot be categorically invalidated, but they encounter some difficulties that make additional hypotheses necessary.     

The Origin of Genetic Code and Translation in the Framework of Current Concepts on the Origin of Life

Biochemistry (Moscow) - The origin of genetic code and translation system is probably the central and most difficult problem in the investigations on the origin of life and one of the most complex...     

Refining the relationship between homozygosity and the frequency of the most frequent allele

Recent work has established that for an arbitrary genetic locus with its number of alleles unspecified, the homozygosity of the locus confines the frequency of the most frequent allele within a narrow range, and vice versa. Here we extend beyond this limiting case by investigating the relationship between homozygosity and the frequency of the most frequent allele when the number of alleles at the locus is treated as known. Given the homozygosity of a locus with at most K alleles, we find that by taking into account the value of K, the width of the allowed range for the frequency of the most frequent allele decreases from ${2/3-\pi^2/18 \approx 0.1184}$ to ${1/3-1/(3K)-\{K/[3(K-1)]\}\sum_{k=2}^K 1/k^2}$ . We further show that properties of the relationship between homozygosity and the frequency of the most frequent allele in the unspecified-K case can be obtained from the specified-K case by taking limits as K → ∞. The results contribute to a greater understanding of the mathematical properties of fundamental statistics employed in population-genetic analysis.     

Studies of the courtship behaviour of the Redshank Tringatotanus

Ground chases are a feature of early breeding season display in the Redshank. Chases usually involve males chasing females in an attempt to copulate. Fights which occur are usually between male and female and not between two males as recorded in most previous literature. On occasions, females will chase interloping males and fight. Chases may give rise to the wing-lifting, pre-copulatory ceremony as may the scraping ceremony which serves to attract a female to a scrape. Ground chases occur most frequently at the end of the first week of April and again at the beginning of the third week. The two peaks in activity coincide with similar peaks in the occurrence of display flights and correspond with two physiologically different groups within the population, early and late breeders. Chases occur most frequently around mid-day.
Scraping takes place mainly in the early breeding season and a single male may produce up to 20 scrapes at this time; later, after egg laying has begun, only a single nest scrape may be produced. The female selects the scrape. Successful copulation does not normally occur until the third week of April and this invariably follows the wing-lifting ceremony.