Paternity testing using the poisonous sting in captive white‐spotted eagle rays Aetobatus narinari: a non‐invasive tool for captive sustainability programmes

A group of captive white‐spotted eagle rays Aetobatus narinari produced 20 offspring, with an unknown father. Part of the poisonous sting was removed from each fish and DNA was extracted from the epidermis for paternity research using eight microsatellite markers of which four were from another species Aetobatus flagellum. This non‐invasive sampling technique can be applied on all members of Myliobatiformes.     

Isolation and characterization of eight microsatellite loci from the longheaded eagle ray, Aetobatus flagellum (Elasmobranchii, Myliobatidae)

The longheaded eagle ray, Aetobatus flagellum feeds mainly on bivalves, and there have been some indications that the current reduction in the bivalve population in southern Japan may be due to an increase in the number of longheaded eagle rays. Consequently, the 'predator control programme' for reducing the longheaded eagle ray population was established in 2001 in Japan. For studying the population genetics of the longheaded eagle ray, we isolated eight polymorphic microsatellite loci (two to six alleles per locus; expected heterozygosity, 0.172-0.700) from this species.     

Taxonomic review of the <Emphasis Type="Italic">Sebastes inermis</Emphasis> species complex (Scorpaeniformes: Scorpaenidae)

A taxonomic review of three color morphotypes of the Sebastes inermis species complex established the existence of three valid species, viz. S. inermis, S. ventricosus, and S. cheni. The complex is defined by having two sharp lachrymal spines, the head weakly armed with nasal, preocular, supraocular and parietal spines, and the caudal fin not distinctly emarginated. Sebastes inermis, known from southern Hokkaido southward to Kyushu, Japan, and the southern part of the Korean Peninsula, is characterized as follows: body dark red or light brown dorsally and laterally when fresh, pectoral fin extending beyond level of anus when depressed, pectoral-fin rays 15, anal-fin rays 7, pored lateral line scales 36–44 and gill rakers 31–37. Sebastes ventricosus, known from Iwate and Ishikawa Prefecture southward to Kyushu, Japan, and the southern part of the Korean Peninsula, is characterized as follows: body somewhat greenish-black dorsally and dark silver ventrally when fresh, pectoral-fin rays 16, anal-fin rays 7–8, pored lateral line scales 43–49, and gill rakers 35–39. Sebastes cheni, known from Iwate and Akita Pref. southward to Kyushu, Japan, and the southern part of the Korean Peninsula, is characterized as follows: body dark golden-brown dorsally and laterally when fresh, pelvic fin extending beyond anus when depressed, pectoral-fin rays 17, anal-fin rays 8, pored lateral line scales 37–46 and gill rakers 32–37. In the genetic analysis, the presence or absence of two AFLP fragments was completely fixed among the three species. Sebastes tokionis and S. guentheri are regarded as junior synonyms of S. inermis and S. ventricosus, respectively. A lectotype is designated for S. cheni, and a key to the three species of the S. inermis species complex provided.     

Distribution and ecological traits of a rare and threatened fungus Hericium flagellum in Poland with the prediction of its potential occurrence in Europe

Hericium flagellum is a highly host-dependent wood-inhabiting fungus in Europe. Its occurrence is strongly connected to the distribution of silver fir (Abies alba). We analysed available data describing ecological factors, especially habitat, substrate preferences and phenology, which are regarded as drivers of H. flagellum occurrence. We also implemented ecological niche modelling to determine the potential range of the fungus. More than half of H. flagellum records (57%) were found in high conservation value areas, on fallen trunks of silver fir trees. The basidiomata were predominantly recorded between August and late November. Distribution of the tree host, precipitation in the driest month, isothermality and annual mean temperature were the most decisive factors influencing H. flagellum occurrence. We conclude that the disjunctive range at present, the risk of tree host extinction linked to habitat loss, and the limited dispersal of H. flagellum propagules are the main threats to this species.     

Occurrence,Growth and Food of Longheaded Eagle Ray, <Emphasis Type="Italic">Aetobatus flagellum</Emphasis>, in Ariake Sound,Kyushu, Japan

Synopsis The longheaded eagle ray, Aetobatus flagellum, has recently increased significantly in numbers in Ariake Sound. It is assumed that it feeds on bivalves and so, to prevent predation by eagle rays on bivalves, a ‘predator control program’ aimed at reducing the ray population has been in place since 2001. We examined their occurrence, age, growth and food in Ariake Sound to obtain data on the ecology of the eagle ray and provide basic information on their potential impact on bivalve stocks in Ariake Bay. The eagle ray is a seasonal visitor to Ariake Sound, increasing in numbers from April, and peaking during the summer. None were captured during surveys in December and February. Their movement pattern around the bay differed according to sex. Pregnant females were caught in the estuary during August and September. Females grew to a larger size than males and apparently lived longer. The maximum ages were 19 years for females and 9 years for males. Growth until two years was similar in both sexes, but after 2 years females grew larger. The eagle ray fed only on bivalves, especially Ruditapes philippinarum and Atrina pectinata, very important fishery species farmed in Ariake Bay.     

A new species of Petrochromis (Perciformes: Cichlidae) from Lake Tanganyika

Based on morphological and molecular analyses of a Petrochromis fish (Cichlidae) from the southern end of Lake Tanganyika, this fish is considered a taxonomic species distinct from the six known congeners. A new scientific name is proposed for this fish. A key to the seven Petrochromis species is included.     

Symphurus hondoensis Hubbs, 1915, a valid species of western Pacific tonguefish (Pleuronectiformes: Cynoglossidae)

Symphurus hondoensis Hubbs, 1915, originally described only from the holotype taken in 390–542 m in Suruga Bay Japan, has long been considered a junior synonym ofS. strictus Gilbert, 1905, known from waters off Hawaii, Japan, the Philippine Islands, and South Africa. Based on new information from the holotype and a specimen recently captured from deep waters (789–815 m) off Amami-Oshima Island, southern Japan,S. hondoensis is now established as a valid species.Symphurus hondoensis is unique among congeners in having the combination of a 1–2–3 pattern of interdigitation of proximal dorsal pterygiophores and neural spines, 10 abdominal vertebrae, 14 caudalfin rays, 111–113 dorsal-fin rays, 95 anal-fin rays, 59 total vertebrae, 105–106 scales in longitudinal series, blind side nearly as darkly pigmented as the ocular surface, and a black peritoneum. Recognition ofS. hondoensis increases the number of described species ofSymphurus in waters off Japan to three (S. orientalis Bleeker,S. strictus, andS. hondoensis), with at least one more underscribed species occurring in deepwater hydrothermal vent areas off southern Japan.     

Connectivity across the Caribbean Sea: DNA Barcoding and Morphology Unite an Enigmatic Fish Larva from the Florida Straits with a New Species of Sea Bass from Deep Reefs off Cura?ao

Integrative taxonomy, in which multiple disciplines are combined to address questions related to biological species diversity, is a valuable tool for identifying pelagic marine fish larvae and recognizing the existence of new fish species. Here we combine data from DNA barcoding, comparative morphology, and analysis of color patterns to identify an unusual fish larva from the Florida Straits and demonstrate that it is the pelagic larval phase of a previously undescribed species of Liopropoma sea bass from deep reefs off Curaçao, southern Caribbean. The larva is unique among larvae of the teleost family Serranidae, Tribe Liopropomini, in having seven elongate dorsal-fin spines. Adults of the new species are similar to the golden bass, Liopropoma aberrans, with which they have been confused, but they are distinct genetically and morphologically. The new species differs from all other western Atlantic liopropomins in having IX, 11 dorsal-fin rays and in having a unique color pattern–most notably the predominance of yellow pigment on the dorsal portion of the trunk, a pale to white body ventrally, and yellow spots scattered across both the dorsal and ventral portions of the trunk. Exploration of deep reefs to 300 m using a manned submersible off Curaçao is resulting in the discovery of numerous new fish species, improving our genetic databases, and greatly enhancing our understanding of deep-reef fish diversity in the southern Caribbean. Oh the mother and child reunion is only a moment away. Paul Simon.     

An Annotated List of Cartilaginous Fishes (Chondrichthyes: Elasmobranchii,Holocephali) of the Coastal Waters of Sakhalin Island and the Adjacent Southern Part of the Sea of Okhotsk

An annotated list of cartilaginous fish (Chondrichthyes: Elasmobranchii, Holocephali) is given for the first time in the 200-year history of studying the ichthyofauna of Sakhalin Island and adjacent waters of the southern part of the Sea of Okhotsk (including the coast of Hokkaido Island) and the northern Sea of Japan. The list includes 43 species in two classes, eight orders, 16 families, and 25 genera. Information on nature conservation status, English and Latin names, depths of habitat, and distribution within the coastal waters of Sakhalin are presented. For a number of species caught off the coast of Sakhalin and in the adjacent waters, information is provided on collection specimens confirming their presence in the region under study. For a number of species of the Rajiformes order (Arctoraja parmifera, A. smirnovi, A. simoterus), the modern ranges and taxonomic status are being refined in the light of new data. The taxonomic status of the so-called “disputed” taxa is discussed as well as the validity of the species considered in the Bathyraja matsubarai complex. Based on the study of the collections, Arctoraja simoterus, previously unknown in the waters of Russia, as well as Myliobatis tobijei, caught in the Bering Sea, has been discovered, which significantly expands the range of this species to the north.     

Length–weight relationships for 10 elasmobranch species from the Oman Sea

Length–weight relationships (LWRs) were estimated for ten elasmobranch species from Iranian waters of the Oman Sea. All specimens were collected by bottom trawl (mesh size 80 mm in the cod end) between May and December 2014. A total of 509 individuals (107 Torpedo sinuspersici, 68 Rhinobatos punctifer, 63 Chaenogaleus macrostoma, 72 Himantura walga, 80 Himantura gerrardi, 58 Gymnura poecilura, 4 Himantura uarnak, 4 Rhinoptera javanica, 14 Aetobatus flagellum, and 39 Pastinachus sephen) were sampled and studied. Results showed that most species had positive allometric or isometric growth but that more studies were needed for final decisions on growth patterns. Both the disk length‐body weight (DL/BW) and disk width‐body weight (DW/BW) relationships also showed a good fit, reinforcing the credibility of the data in relation to the LWRs. This study is the first report of LWRs for these elasmobranchs in the northern Oman Sea.     

Life history and seasonal occurrence of the spotted eagle ray,Aetobatus narinari,in the eastern Gulf of Mexico

The spotted eagle ray, Aetobatus narinari, is listed on the IUCN Red List of Threatened Species as Near Threatened with a decreasing population trend, but many aspects of this ray’s biology and population status are unknown. Aerial and on-water surveys were conducted in the eastern Gulf of Mexico off southwest Florida 2008–2013, to document seasonal occurrence and life history characteristics of this species. Aerial surveys documented spotted eagle rays mostly in spring, summer, and autumn months with larger aggregations observed near inlet passes. Boat-based surveys documented rays on 152 out of 176 survey days, mostly as solitary individuals but sometimes in aggregations of up to 60. More rays were observed when water temperatures were 23-31?ºC. A total of 393 rays (231 males, 161 females, 1 unrecorded sex) were captured, measured, sampled, tagged, and released. Sizes ranged 41.4–203.0 cm disc width (DW) and weight 1.1–105.5 kg. Male size at 50 % maturity was 127 cm DW. Five percent (19) of tagged rays were recaptured after 5–1,293 days at liberty and recaptured rays exhibited faster growth than previously estimated from vertebral readings. Based on observations of rays relative to survey effort, numbers of observed rays declined after 2009 for reasons not yet understood. This observation, together with concerns about sustainability of fisheries targeting these rays in nearby Mexico and Cuba, underscore the need for investigations into stock structure, population trends, growth, and critical habitat of spotted eagle rays throughout the Gulf of Mexico, Caribbean Sea, and elsewhere in their range.     

The formation of the Lycodinae fauna (Perciformes: Zoarcidae) of the Sea of Japan

The subfamily Lycodinae is represented in the Sea of Japan by two genera (Lycodes and Petroschmidtia) and seven species (Lycodes japonicus, L. nakamurae, L. raridens, L. tanakae, L. teraoi, L. yamatoi, and Petroschmidtia toyamensis), which are widely distributed on the shelf and upper continental slope. Based on the geographic and bathymetric distribution of eelpouts of the Sea of Japan and adjacent waters, two groups of closely related species with different types of distribution ranges were distinguished. The first group includes pairs of species that live primarily on the continental slope and are completely isolated in the Sea of Japan or in the Sea of Okhotsk. The second group is comprised of upper interzonal species of the Sea of Japan that are found on the continental slope and shelf, as well as in the southern Sea of Okhotsk from Terpeniya Bay to the southern Kuril Islands. Their related species in the Sea of Okhotsk are mostly found to the north of the Terpeniya Bay. The study of the eelpout distribution and the data on the geological history and paleoclimate of the Far East show that the Lycodinae fauna of the Sea of Japan was formed from North Pacific eelpout-like fishes during the isolation of the sea in the late Pliocene-early Pleistocene, which was concomitant with the general cooling of the Earth’s climate. During the Pleistocene interglacials, the eelpout migrations were unidirectional, from the Sea of Japan to the southern Sea of Okhotsk. The reconstruction of the formation of the Sea of Japan Lycodinae fauna suggests that the related taxa from the Sea of Japan and the Sea of Okhotsk are separate species, while the northern and southern forms of species from the Sea of Japan (Lycodes yamatoi and L. teraoi) are no more than subspecies.     

Identification of rays through DNA barcoding: an application for ecologists

DNA barcoding potentially offers scientists who are not expert taxonomists a powerful tool to support the accuracy of field studies involving taxa that are diverse and difficult to identify. The taxonomy of rays has received reasonable attention in Australia, although the fauna in remote locations such as Ningaloo Reef, Western Australia is poorly studied and the identification of some species in the field is problematic. Here, we report an application of DNA-barcoding to the identification of 16 species (from 10 genera) of tropical rays as part of an ecological study. Analysis of the dataset combined across all samples grouped sequences into clearly defined operational taxonomic units, with two conspicuous exceptions: the Neotrygon kuhlii species complex and the Aetobatus species complex. In the field, the group that presented the most difficulties for identification was the spotted whiptail rays, referred to as the 'uarnak' complex. Two sets of problems limited the successful application of DNA barcoding: (1) the presence of cryptic species, species complexes with unresolved taxonomic status and intra-specific geographical variation, and (2) insufficient numbers of entries in online databases that have been verified taxonomically, and the presence of lodged sequences in databases with inconsistent names. Nevertheless, we demonstrate the potential of the DNA barcoding approach to confirm field identifications and to highlight species complexes where taxonomic uncertainty might confound ecological data.     

Phylogenetic Molecular Species Delimitations Unravel Potential New Species in the Pest Genus Spodoptera Guenée, 1852 (Lepidoptera,Noctuidae)

Nowadays molecular species delimitation methods promote the identification of species boundaries within complex taxonomic groups by adopting innovative species concepts and theories (e.g. branching patterns, coalescence). As some of them can efficiently deal with large single-locus datasets, they could speed up the process of species discovery compared to more time consuming molecular methods, and benefit from the existence of large public datasets; these methods can also particularly favour scientific research and actions dealing with threatened or economically important taxa. In this study we aim to investigate and clarify the status of economically important moths species belonging to the genus Spodoptera (Lepidoptera, Noctuidae), a complex group in which previous phylogenetic analyses and integrative approaches already suggested the possible occurrence of cryptic species and taxonomic ambiguities. In this work, the effectiveness of innovative (and faster) species delimitation approaches to infer putative species boundaries has been successfully tested in Spodoptera, by processing the most comprehensive dataset (in terms of number of species and specimens) ever achieved; results are congruent and reliable, irrespective of the set of parameters and phylogenetic models applied. Our analyses confirm the existence of three potential new species clusters (for S. exigua (Hübner, 1808), S. frugiperda (J.E. Smith, 1797) and S. mauritia (Boisduval, 1833)) and support the synonymy of S. marima (Schaus, 1904) with S. ornithogalli (Guenée, 1852). They also highlight the ambiguity of the status of S. cosmiodes (Walker, 1858) and S. descoinsi Lalanne-Cassou & Silvain, 1994. This case study highlights the interest of molecular species delimitation methods as valuable tools for species discovery and to emphasize taxonomic ambiguities.     

A Molecular Phylogeny of Plesiorycteropus Reassigns the Extinct Mammalian Order ‘Bibymalagasia’

Madagascar is well known for its diverse fauna and flora, being home to many species not found anywhere else in the world. However, its biodiversity in the recent past included a range of extinct enigmatic fauna, such as elephant birds, giant lemurs and dwarfed hippopotami. The ‘Malagasy aardvark’ (Plesiorycteropus) has remained one of Madagascar’s least well-understood extinct species since its discovery in the 19^th century. Initially considered a close relative of the aardvark (Orycteropus) within the order Tubulidentata, more recent morphological analyses challenged this placement on the grounds that the identifiably derived traits supporting this allocation were adaptations to digging rather than shared ancestry. Because the skeletal evidence showed many morphological traits diagnostic of different eutherian mammal orders, they could not be used to resolve its closest relatives. As a result, the genus was tentatively assigned its own taxonomic order ‘Bibymalagasia’, yet how this order relates to other eutherian mammal orders remains unclear despite numerous morphological investigations. This research presents the first known molecular sequence data for Plesiorycteropus, obtained from the bone protein collagen (I), which places the ‘Malagasy aardvark’ as more closely related to tenrecs than aardvarks. More specifically, Plesiorycteropus was recovered within the order Tenrecoidea (golden moles and tenrecs) within Afrotheria, suggesting that the taxonomic order ‘Bibymalagasia’ is obsolete. This research highlights the potential for collagen sequencing in investigating the phylogeny of extinct species as a viable alternative to ancient DNA (aDNA) sequencing, particularly in cases where aDNA cannot be recovered.     

A new Liopropoma sea bass (Serranidae,Epinephelinae, Liopropomini) from deep reefs off Cura?ao,southern Caribbean,with comments on depth distributions of western Atlantic liopropomins

Collecting reef-fish specimens using a manned submersible diving to 300 m off Curaçao, southern Caribbean, is resulting in the discovery of numerous new fish species. The new Liopropoma sea bass described here differs from other western Atlantic members of the genus in having VIII, 13 dorsal-fin rays; a moderately indented dorsal-fin margin; a yellow-orange stripe along the entire upper lip; a series of approximately 13 white, chevron-shaped markings on the ventral portion of the trunk; and a reddish-black blotch on the tip of the lower caudal-fin lobe. The new species, with predominantly yellow body and fins, closely resembles the other two “golden basses” found together with it at Curaçao: L. aberrans and L. olneyi. It also shares morphological features with the other western Atlantic liopropomin genus, Bathyanthias. Preliminary phylogenetic data suggest that western Atlantic liopropomins, including Bathyanthias, are monophyletic with respect to Indo-Pacific Liopropoma, and that Bathyanthias is nested within Liopropoma, indicating a need for further study of the generic limits of Liopropoma. The phylogenetic data also suggest that western Atlantic liopropomins comprise three monophyletic clades that have overlapping depth distributions but different depth maxima (3–135 m, 30–150 m, 133–411 m). The new species has the deepest depth range (182–241 m) of any known western Atlantic Liopropoma species. Both allopatric and depth-mediated ecological speciation may have contributed to the evolution of western Atlantic Liopropomini.     

A new creediid fishCreedia bilineatus from the Yaeyama Islands,Japan

A new creediid fish,Creedia bilineatus, is described on the basis of 3 specimens from the Yaeyama Islands, Okinawa Pref., Japan. This new species is distinguished from all other species of the genusCreedia by having fewer anal fin rays (17–18 vs. 24–28).     

Revision of the rhinoceros beetle genus Oryctophileurus Kolbe with description of a new species,the male of O. varicosus Prell,and notes on biogeography (Scarabaeoidea,Dynastinae, Phileurini)

The genus Oryctophileurus is reviewed and its validity is supported by a combination of the following apomorphic characters: a single cephalic horn with lateral carina, pronotal cavity with ocellate punctures and two teeth or tubercles close behind the anterior pronotal margin. The male of Oryctophileurus varicosus Prell, 1934, is described for the first time. A new species, Oryctophileurus guerrai Perger & Grossi sp. n., from subhumid Tucuman-Bolivian forest in the Southern Bolivian Andes is described. The new species is distinguished from its closest relative, O. armicollis Prell, 1911, by a narrower distance between the inner teeth of the dorsal pronotal protuberances and a reduced area of weakly developed ocellate punctures above the posterolateral pronotal margin. The occurrence of Oryctophileurus species in areas of endemism along the eastern slope of the tropical Andes suggests that these populations represent biogeographic “relicts”, and the discovery of Oryctophileurus guerrai sp. n. in the southern Bolivian Andes suggests that this area is underrated with respect to insect diversity and endemism.