The Role of Sharks and Longline Fisheries in a Pelagic Ecosystem of the Central Pacific

The increased exploitation of pelagic sharks by longline fisheries raised questions about changes in the food webs that include sharks as apex predators. We used a version of Ecopath/Ecosim models to evaluate changes in trophic interactions due to shark exploitation in the Central North Pacific. Fisheries targeted on blue sharks tend to produce compensatory responses that favor other shark species and billfishes, but they have only modest effects on the majority of food web components. Modest levels of intraguild predation (adult sharks that eat juvenile sharks) produce strong, nonlinear responses in shark populations. In general, analysis of the Central North Pacific model reveals that sharks are not keystone predators, but that increases in longline fisheries can have profound effects on the food webs that support sharks. Received 19 April 2001; accepted 2 October 2001.     

Spain,the European Union,and Canada: A New Phase in the Unstable Balance in the Northwest Atlantic Fisheries

The past stormy fisheries relations between Canada and the European Union, in particular with Spain, has been replaced by uncertainty in the application of the newly amended Northwest Atlantic Fisheries Convention. These issues are addressed in this article that sheds light on the more peaceful fishing relations between the two leading international actors in this area of the oceans.     

Developing and Communicating a Taxonomy of Ecological Indicators: A Case Study from the Mid-Atlantic

To ensure indicators of ecosystem health are integrated into environmental decision-making, it is imperative to provide a comprehensive framework for indicator selection and use. The same framework can also be used to evaluate the utility of any given indicator. The Atlantic Slope Consortium (ASC) has developed such a framework, based upon three primary elements: 1) The specific questions to be answered (the type of indicator), recognizing the following types of questions/indicators: Condition assessment: snapshot of the current state of the system; Stressor diagnosis: identification of causative factors of condition; Communication to the public: encouraging comprehension of condition in its most elementary or integrated form; Futures assessment: estimating the probable trajectory of condition, or assessing the vulnerability of any system to a stochastic event; Evaluation: a subset of condition indicators that evaluate the effectiveness of management actions. 2) The spatial and/or temporal scale of the issue being addressed (the spatial/temporal scale over which the indicator is valid). 3) The context of the question, using categories of surrounding land use as surrogates for social choices. A Fish Community Index (FCI) developed for the ASC will provide an example of utilizing the framework to select an indicator, as well as using the framework to judge the utility of the indicator.     

A Unique Redox-sensing Sensor II Motif in TorsinA Plays a Critical Role in Nucleotide and Partner Binding

Early onset dystonia is commonly associated with the deletion of one of a pair of glutamate residues (ΔE302/303) near the C terminus of torsinA, a member of the AAA+ protein family (ATPases associated with a variety of cellular activities) located in the endoplasmic reticulum lumen. The functional consequences of the disease-causing mutation, ΔE, are not currently understood. By contrast to other AAA+ proteins, torsin proteins contain two conserved cysteine residues in the C-terminal domain, one of which is located in the nucleotide sensor II motif. Depending on redox status, an ATP hydrolysis mutant of torsinA interacts with lamina-associated polypeptide 1 (LAP1) and lumenal domain like LAP1 (LULL1). Substitution of the cysteine in sensor II diminishes the redox-regulated interaction of torsinA with these substrates. Significantly, the dystonia-causing mutation, ΔE, alters the ability of torsinA to mediate the redox-regulated interactions with LAP1 and LULL1. Limited proteolysis experiments reveal redox- and mutation-dependent changes in the local conformation of torsinA as a function of nucleotide binding. These results indicate that the cysteine-containing sensor II plays a critical role in redox sensing and the nucleotide and partner binding functions of torsinA and suggest that loss of this function of torsinA contributes to the development of DYT1 dystonia.     

Taxonomy and Distribution of Phenazine-Producing Pseudomonas spp. in the Dryland Agroecosystem of the Inland Pacific Northwest,United States

We investigated the taxonomic placement of phenazine-producing fluorescent Pseudomonas spp. in the Inland Pacific Northwest region of the United States. Five distinct species were identified, two of which were provisionally considered to be new. Agroclimatic zone and soil silt content affected the species diversity across the region.     

126 Porphyra Birdiae Neefus et Mathieson (Bangiales, Rhodophyta): A New Species from the Northwest Atlantic

Recent studies combining biochemical, molecular, and traditional morphological and ecological traits have shown that some currently recognized species of the red algal genus Porphyra are actually "form species" or "complexes" comprising several morphologically similar but genetically distinct taxa. Conflicting reports of chromosome numbers and differences in DNA sequences reported for Porphyra purpurea (Roth) C. Agardh have raised suspicion that more than one taxon has been confused under this name in the Northwest Atlantic. We have identified one of these cryptic taxa and have recently described it as a new species, Porphyra birdiae . Like P. purpurea (Roth) C. Agardh, it has an ovate to broadly elongate, foliose blade with reproductive areas segregated by a distinct line into male and female sectors. While reproductive specimens have historically been confused with P. purpurea , non-reproductive specimens of P. birdiae have been incorrectly identified as P. umbilicalis Kützing. Although P. birdiae is morphologically similar to both of these species, sequences of SSU (nuclear small subunit rRNA gene) and rbc L (plastid ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit gene) indicate that it is not closely related to either one. Based on rbc L sequences, P. birdiae is closely related to P. aestivalis Lindstrom et Fredericq, a proposed new species from Alaska.     

Patterns of genetic differentiation in Thamnophis and Taricha from the Pacific Northwest

Aim The co‐evolutionary interaction between the common garter snake, Thamnophis sirtalis, and the rough‐skinned newt, Taricha granulosa, takes place throughout much of the Pacific Northwest (North America). The biogeography of the Pacific Northwest has been heavily influenced by the last Pleistocene glaciation, which reached a maximum as late as 14,000 yr bp . We researched: (1) what type of population structure is present for garter snakes and newts, (2) whether the population structure of these species is consistent with a Pleistocene glaciation hypothesis, and (3) how population structure and migration possibly affect co‐evolution between these species. Location The Pacific Northwest of North America, specifically northern California, Oregon and Washington in the USA. Methods We sampled approximately 20 populations for each species from three different transects. Using microsatellite markers and tissue samples from both species, we quantified the population structure for both species. Individual‐based assignment tests were used to estimate contemporary migration rates. Results Both Th. sirtalis and Ta. granulosa exhibited little genetic differentiation among our study sites, even among those separated by large distances. Significant population structure was detected on multiple geographic scales. Differences in population structure were observed among transects and between garter snake and newt transects. Contemporary migration rate estimates indicate high levels of genetic exchange between populations. Main conclusions Prior to this study, little was known about the fine‐scale population structure of either species in this region. Patterns of population structure for garter snakes and newts reflect a shared biogeographical history affected by the Pleistocene glaciation in the Pacific Northwest. Both species apparently migrate frequently between populations, thus potentially retarding the process of adaptive co‐evolution. We find that populations from a northern coastal transect (Washington) are most likely to be locally adapted.     

A Political Ecology of Picking: Non-Timber Forest Products in the Pacific Northwest

Using a political ecology framework, this research analyzes the recent entry of recent Latino and Southeast Asian immigrants into the harvesting of non-timber forest products in the Pacific Northwest. Using both permit data and interviewing, it suggests that a world market for these products, government policy, and environmental conditions have the potential for driving harvests to unsustainable levels and exacerbating incipient conflicts.     

Toll Like Receptor 3 Plays a Critical Role in the Progression and Severity of Acetaminophen-Induced Hepatotoxicity

Toll-like receptor (TLR) activation has been implicated in acetaminophen (APAP)-induced hepatotoxicity. Herein, we hypothesize that TLR3 activation significantly contributed to APAP-induced liver injury. In fasted wildtype (WT) mice, APAP caused significant cellular necrosis, edema, and inflammation in the liver, and the de novo expression and activation of TLR3 was found to be necessary for APAP-induced liver failure. Specifically, liver tissues from similarly fasted TLR3-deficient (tlr3^−/−) mice exhibited significantly less histological and biochemical evidence of injury after APAP challenge. Similar protective effects were observed in WT mice in which TLR3 was targeted through immunoneutralization at 3 h post-APAP challenge. Among three important death ligands (i.e. TNFα, TRAIL, and FASL) known to promote hepatocyte death after APAP challenge, TNFα was the only ligand that was significantly reduced in APAP-challenged tlr3^−/− mice compared with APAP-challenged WT controls. In vivo studies demonstrated that TLR3 activation contributed to TNFα production in the liver presumably via F4/80⁺ and CD11c⁺ immune cells. In vitro studies indicated that there was cooperation between TNFα and TLR3 in the activation of JNK signaling in isolated and cultured liver epithelial cells (i.e. nMuLi). Moreover, TLR3 activation enhanced the expression of phosphorylated JNK in APAP injured livers. Thus, the current study demonstrates that TLR3 activation contributes to APAP-induced hepatotoxicity.     

New data on the distribution and feeding habits of jellyfish in the Northwest Pacific

In June and July of 2012, the jellyfish catches in the northeastern portion of the surveyed Pacific waters off the Kuril Islands substantially exceeded those in the southwestern portion. This indicates that jellyfish disperse over the studied area predominantly from the southern Bering Sea and from the eastern coast of Kamchatka. Their strobilation probably takes place as well on the shelf and continental slope of eastern Kamchatka. The distribution of jellyfish with medium-sized bells does not show any geographic pattern; the aggregations that are formed are mixed regarding the original locality of individuals. Jellyfish occur within a broad range of surface water temperatures and their catches have declined significantly only in the southeast of the area of surveys near the Subarctic Front. As is seen from the data we compared, not only the abundance of jellyfish, but their feeding activity and, as a consequence, the amount of consumed food decreased by an order of magnitude during the cold season (in the spring 2011). However, irrespective of the season, the largest quantities of food were recorded in the largest and most numerous jellyfish (Phacellophora camtschatica, Chrysaora melanaster). The quantitative results of the studies on the diet of jellyfish may be somewhat underestimated, as fragile jellyfish bodies are easily damaged in trawl nets and evaluating the diet is possible only for intact individuals. Use of specialized catching gear in the future may help us to specify the feeding dynamics in jellyfish, as well they may provide an opportunity to observe their feeding behavior. At the same time, quantitative estimates of the daily-food intake in jellyfish can be obtained only by taking the rates of digestion and prey consumption found under laboratory conditions into account, with their subsequent verification in balance models.     

Occurrence,Growth and Food of Longheaded Eagle Ray, <Emphasis Type="Italic">Aetobatus flagellum</Emphasis>, in Ariake Sound,Kyushu, Japan

Synopsis The longheaded eagle ray, Aetobatus flagellum, has recently increased significantly in numbers in Ariake Sound. It is assumed that it feeds on bivalves and so, to prevent predation by eagle rays on bivalves, a ‘predator control program’ aimed at reducing the ray population has been in place since 2001. We examined their occurrence, age, growth and food in Ariake Sound to obtain data on the ecology of the eagle ray and provide basic information on their potential impact on bivalve stocks in Ariake Bay. The eagle ray is a seasonal visitor to Ariake Sound, increasing in numbers from April, and peaking during the summer. None were captured during surveys in December and February. Their movement pattern around the bay differed according to sex. Pregnant females were caught in the estuary during August and September. Females grew to a larger size than males and apparently lived longer. The maximum ages were 19 years for females and 9 years for males. Growth until two years was similar in both sexes, but after 2 years females grew larger. The eagle ray fed only on bivalves, especially Ruditapes philippinarum and Atrina pectinata, very important fishery species farmed in Ariake Bay.     

An Evaluation of the Role the Internet Site Petfinder Plays in Cat Adoptions

To better understand factors contributing to cat adoptions, this study was used to explore a possible association between an adoptable cat's popularity on Petfinder and the cat's length of availability for adoption at a managed-intake nonhuman animal shelter. This study was also used to examine factors associated with a cat's popularity on Petfinder and the percentage of adopters who visited Petfinder before making adoption decisions. One third of adopters surveyed visited Petfinder before adopting, and half of those had viewed their adopted cats' Petfinder profiles. The number of clicks per day that cats received on the site was negatively correlated with their length of availability. Age at adoption was positively correlated with length of availability and negatively correlated with number of clicks per day. Coat color was a strong predictor of number of clicks per day and length of availability. The only variable within the photographer's control significantly associated with number of clicks per day was whether the photos included toys. Although cats' physical characteristics are strong predictors of their popularity, strategic use of toys in cats' photographs may promote adoptions of cats who are typically overlooked.     

A New Dimension in Documenting New Species: High-Detail Imaging for Myriapod Taxonomy and First 3D Cybertype of a New Millipede Species (Diplopoda,Julida, Julidae)

We review the state-of-the-art approaches currently applied in myriapod taxonomy, and we describe, for the first time, a new species of millipede (Ommatoiulus avatarn. sp., family Julidae) using high-resolution X-ray microtomography (microCT) as a substantive adjunct to traditional morphological examination. We present 3D models of the holotype and paratype specimens and discuss the potential of this non-destructive technique in documenting new species of millipedes and other organisms. The microCT data have been uploaded to an open repository (Dryad) to serve as the first actual millipede cybertypes to be published.     

Lessons Learned from Reconstructing Interactions Between Local Ecological Knowledge, Fisheries Science, and Fisheries Management in the Commercial Fisheries of Newfoundland and Labrador, Canada

Questions centered on the development of local and traditional ecological knowledge and the relationship of that knowledge to the development of conservation and management practices have recently attracted critical attention. We examine these questions with respect to the dynamic commercial fisheries of the Canadian province of Newfoundland and Labrador. The knowledge of fish harvesters coevolves with fishing practices and is embedded in a dynamic socioecological network that extends into and beyond the fisher, fishery households, and communities to include management, technologies, markets, and marine ecological conditions. Changes in these networks have moved knowledge and practices related to fishing in directions defined by policy, science, economic rationality, and new ecological realities. We characterize this movement as a shift along a continuum from local ecological knowledge (LEK) towards globalized harvesting knowledge (GHK) as harvesters become increasingly disconnected from socioecological relationships associated with traditional species and stocks. We conclude with a discussion of how LEK/GHK have interacted over time and space with other knowledge systems (particularly science) to influence management, and suggest that contingent, empirical evaluations of these interactions will provide a fruitful avenue for future interdisciplinary research.