In planta production of two peptides of the Classical Swine Fever Virus (CSFV) E2 glycoprotein fused to the coat protein of potato virus X

Background  

Classical Swine Fever (CSFV) is one of the most important viral infectious diseases affecting wild boars and domestic pigs. The etiological agent of the disease is the CSF virus, a single stranded RNA virus belonging to the family Flaviviridae.     

Serosurvey for selected pathogens in Iberian roe deer

Background  

The roe deer is the most abundant and widespread wild Eurasian cervid. Its populations are expanding and increasingly in contact with livestock. This may affect the distribution of infectious diseases shared with other wild and domestic ungulates.     

Proteomic analysis of chicken embryonic trachea and kidney tissues after infection <Emphasis Type="Italic">in ovo</Emphasis> by avian infectious bronchitis coronavirus

Background  

Avian infectious bronchitis (IB) is one of the most serious diseases of economic importance in chickens; it is caused by the avian infectious coronavirus (IBV). Information remains limited about the comparative protein expression profiles of chicken embryonic tissues in response to IBV infection in ovo. In this study, we analyzed the changes of protein expression in trachea and kidney tissues from chicken embryos, following IBV infection in ovo, using two-dimensional gel electrophoresis (2-DE) coupled with matrix-assisted laser desorption/ionization time-of-flight tandem mass spectrometry (MALDI-TOF-TOF MS).     

Global distribution of outbreaks of water-associated infectious diseases

Background

Water plays an important role in the transmission of many infectious diseases, which pose a great burden on global public health. However, the global distribution of these water-associated infectious diseases and underlying factors remain largely unexplored.

Methods and Findings

Based on the Global Infectious Disease and Epidemiology Network (GIDEON), a global database including water-associated pathogens and diseases was developed. In this study, reported outbreak events associated with corresponding water-associated infectious diseases from 1991 to 2008 were extracted from the database. The location of each reported outbreak event was identified and geocoded into a GIS database. Also collected in the GIS database included geo-referenced socio-environmental information including population density (2000), annual accumulated temperature, surface water area, and average annual precipitation. Poisson models with Bayesian inference were developed to explore the association between these socio-environmental factors and distribution of the reported outbreak events. Based on model predictions a global relative risk map was generated. A total of 1,428 reported outbreak events were retrieved from the database. The analysis suggested that outbreaks of water-associated diseases are significantly correlated with socio-environmental factors. Population density is a significant risk factor for all categories of reported outbreaks of water-associated diseases; water-related diseases (e.g., vector-borne diseases) are associated with accumulated temperature; water-washed diseases (e.g., conjunctivitis) are inversely related to surface water area; both water-borne and water-related diseases are inversely related to average annual rainfall. Based on the model predictions, “hotspots” of risks for all categories of water-associated diseases were explored.

Conclusions

At the global scale, water-associated infectious diseases are significantly correlated with socio-environmental factors, impacting all regions which are affected disproportionately by different categories of water-associated infectious diseases.     

Impact of coccidial infection on vaccine- and vvIBDV in lymphoid tissues of SPF chickens as detected by RT-PCR

Background  

This study aimed at investigating a potential effect caused by coccidia on the immune response to vaccine- and very virulent infectious bursal disase virus (vvIBDV) in SPF chickens.     

Consistent characterisation factors at midpoint and endpoint relevant to agricultural water scarcity arising from freshwater consumption

Purpose

The shortage of agricultural water from freshwater sources is a growing concern because of the relatively large amounts needed to sustain food production for an increasing population. In this context, an impact assessment methodology is indispensable for the identification and assessment of the potential consequences of freshwater consumption in relation to agricultural water scarcity. This paper reports on the consistent development of midpoint and endpoint characterisation factors (CFs) for assessing these impacts.

Methods

Midpoint characterisation factors focus specifically on shortages in food production resulting from agricultural water scarcity. These were calculated by incorporating country-specific compensation factors for physical availability of water resources and socio-economic capacity in relation to the irrigation water demand for agriculture. At the endpoint, to reflect the more complex impact pathways from food production losses to malnutrition damage from agricultural water scarcity, international food trade relationships and economic adaptation capacity were integrated in the modelling with measures of nutritional vulnerability for each country.

Results and discussion

The inter-country variances of CFs at the midpoint revealed by this study were larger than those derived using previously developed methods, which did not integrate compensation processes by food stocks. At the endpoint level, both national and trade-induced damage through international trade were quantified and visualised. Distribution of malnutrition damage was also determined by production and trade balances for commodity groups in water-consuming countries, as well as dependency on import ratios for importer countries and economic adaptation capacity in each country. By incorporating the complex relationships between these factors, estimated malnutrition damage due to freshwater consumption at the country scale showed good correlation with total reported nutritional deficiency damage.

Conclusions

The model allows the establishment of consistent CFs at the midpoint and endpoint for agricultural water scarcity resulting from freshwater consumption. The complex relationships between food production supply and nutrition damage can be described by considering the physical and socio-economic parameters used in this study. Developed CFs contribute to a better assessment of the potential impacts associated with freshwater consumption in global supply chains and to life cycle assessment and water footprint assessments.

     

Pros and cons of a prion-like pathogenesis in Parkinson's disease

Background  

Parkinson's disease (PD) is a slowly progressive neurodegenerative disorder which affects widespread areas of the brainstem, basal ganglia and cerebral cortex. A number of proteins are known to accumulate in parkinsonian brains including ubiquitin and α-synuclein. Prion diseases are sporadic, genetic or infectious disorders with various clinical and histopathological features caused by prion proteins as infectious proteinaceous particles transmitting a misfolded protein configuration through brain tissue. The most important form is Creutzfeldt-Jakob disease which is associated with a self-propagating pathological precursor form of the prion protein that is physiologically widely distributed in the central nervous system.     

Long‐range quantitative PCR for determining inactivation of adenovirus 2 by ultraviolet light

Aims

An extra‐long‐range quantitative PCR (LR‐qPCR) method was developed for estimating genome damage to adenovirus 2 caused by UV irradiation. The objective was to use LR‐qPCR as a rapid method to determine adenovirus UV inactivation.

Methods

The LR‐qPCR consisted of two steps: a long‐range PCR (up to 10 kb fragment) and a real‐time, quantitative (q) PCR for quantifying the products of the first PCR. We evaluated LR‐qPCR with adenovirus irradiated with medium‐pressure (MP, polychromatic emission) and low‐pressure (LP, 254 nm) mercury vapour lamps and compared results with cell culture infectivity.

Results

Using LR‐qPCR, a fragment of 6 kb estimated DNA damage in a linear relationship to doses between 0 and 20 mJ cm^?2, and a 1‐kb fragment related linearly to doses between 20 and 100 mJ cm^?2. The LR‐qPCR results for the 6‐kb fragment were similar to infectivity assays results for adenovirus exposed to MP UV. For adenovirus irradiated with LP lamps, LR‐qPCR results for the shorter fragment size (1 kb) were similar to reduction in viral infectivity. No difference was observed between 10 and 6 kb LR‐qPCR results.

Conclusion

The LR‐qPCR can be used as a tool for estimating DNA damage caused by UV in adenovirus. The LR‐qPCR results were related to reduction in viral infectivity.

Significance and Impact of the Study

The use of LR‐qPCR to determine DNA damage and estimate inactivation of adenovirus 2 from UV disinfection allows for same‐day results compared with >7 days required for cell culture. This accelerates adenovirus inactivation results for the water industry where adenovirus is used as a representative virus for crediting UV systems. This PCR approach provides a framework that can be used for other viral viability assays using the inhibition of amplification of viral nucleic acid after pretreatments, such as propidium monoazide, and for cellular biology studies of DNA damage.     

Shotgun proteomic analysis of mulberry dwarf phytoplasma

Background  

Mulberry dwarf (MD), which is caused by phytoplasma, is one of the most serious infectious diseases of mulberry. Phytoplasmas have been associated with diseases in several hundred plant species. The inability to culture phytoplasmas in vitro has hindered their characterization at the molecular level. Though the complete genomes of two phytoplasmas have been published, little information has been obtained about the proteome of phytoplasma. Therefore, the proteomic information of phytoplasmas would be useful to elucidate the functional mechanisms of phytoplasma in many biological processes.     

The influence of value choices in life cycle impact assessment of stressors causing human health damage

Purpose

This study analyzes the influence of value choices in impact assessment models for human health, such as the choice of time horizon, on life cycle assessment outcomes.

Methods

For 756 products, the human health damage score is calculated using three sets of characterization factors (CFs). The CFs represent seven human health impact assessment categories: water scarcity, tropospheric ozone formation, particulate matter formation, human toxicity, ionizing radiation, stratospheric ozone depletion, and climate change. Each set of CFs embeds a combination of value choices following the Cultural Theory, and reflects the individualist, hierarchist, or egalitarian perspective.

Results

We found that the average difference in human health damage score goes from 1 order of magnitude between the individualist and hierarchist perspectives to 2.5 orders of magnitude between the individualist and egalitarian perspectives. The difference in damage score of individual materials among perspectives depends on the combination of emissions driving the impact of both perspectives and can rise up to 5 orders of magnitude.

Conclusions

The value choices mainly responsible for the differences in results among perspectives are the choice of time horizon and inclusion of highly uncertain effects. A product comparison can be affected when the human health damage score of two products differ less than a factor of 5, or the comparing products largely differ in their emitted substances. Overall, our study implies that value choices in impact assessment modeling can modify the outcomes of a life cycle assessment (LCA) and thus the practical implication of decisions based on the results of an LCA.     

Environmental analysis of rainwater harvesting infrastructures in diffuse and compact urban models of Mediterranean climate

Purpose  

At present, many urban areas in Mediterranean climates are coping with water scarcity, facing a growing water demand and a limited conventional water supply. Urban design and planning has so far largely neglected the benefits of rainwater harvesting (RWH) in the context of a sustainable management of this resource. Therefore, the purpose of this study was to identify the most environmentally friendly strategy for rainwater utilization in Mediterranean urban environments of different densities.     

The impact of infection on population health: results of the ontario burden of infectious diseases study

Background

Evidence-based priority setting is increasingly important for rationally distributing scarce health resources and for guiding future health research. We sought to quantify the contribution of a wide range of infectious diseases to the overall infectious disease burden in a high-income setting.

Methodology/Principal Findings

We used health-adjusted life years (HALYs), a composite measure comprising premature mortality and reduced functioning due to disease, to estimate the burden of 51 infectious diseases and associated syndromes in Ontario using 2005–2007 data. Deaths were estimated from vital statistics data and disease incidence was estimated from reportable disease, healthcare utilization, and cancer registry data, supplemented by local modeling studies and national and international epidemiologic studies. The 51 infectious agents and associated syndromes accounted for 729 lost HALYs, 44.2 deaths, and 58,987 incident cases per 100,000 population annually. The most burdensome infectious agents were: hepatitis C virus, Streptococcus pneumoniae, Escherichia coli, human papillomavirus, hepatitis B virus, human immunodeficiency virus, Staphylococcus aureus, influenza virus, Clostridium difficile, and rhinovirus. The top five, ten, and 20 pathogens accounted for 46%, 67%, and 75% of the total infectious disease burden, respectively. Marked sex-specific differences in disease burden were observed for some pathogens. The main limitations of this study were the exclusion of certain infectious diseases due to data availability issues, not considering the impact of co-infections and co-morbidity, and the inability to assess the burden of milder infections that do not result in healthcare utilization.

Conclusions/Significance

Infectious diseases continue to cause a substantial health burden in high-income settings such as Ontario. Most of this burden is attributable to a relatively small number of infectious agents, for which many effective interventions have been previously identified. Therefore, these findings should be used to guide public health policy, planning, and research.     

Global guidance on environmental life cycle impact assessment indicators: impacts of climate change,fine particulate matter formation,water consumption and land use

Purpose

Guidance is needed on best-suited indicators to quantify and monitor the man-made impacts on human health, biodiversity and resources. Therefore, the UNEP-SETAC Life Cycle Initiative initiated a global consensus process to agree on an updated overall life cycle impact assessment (LCIA) framework and to recommend a non-comprehensive list of environmental indicators and LCIA characterization factors for (1) climate change, (2) fine particulate matter impacts on human health, (3) water consumption impacts (both scarcity and human health) and 4) land use impacts on biodiversity.

Methods

The consensus building process involved more than 100 world-leading scientists in task forces via multiple workshops. Results were consolidated during a 1-week Pellston Workshop? in January 2016 leading to the following recommendations.

Results and discussion

LCIA framework: The updated LCIA framework now distinguishes between intrinsic, instrumental and cultural values, with disability-adjusted life years (DALY) to characterize damages on human health and with measures of vulnerability included to assess biodiversity loss. Climate change impacts: Two complementary climate change impact categories are recommended: (a) The global warming potential 100 years (GWP 100) represents shorter term impacts associated with rate of change and adaptation capacity, and (b) the global temperature change potential 100 years (GTP 100) characterizes the century-scale long term impacts, both including climate-carbon cycle feedbacks for all climate forcers. Fine particulate matter (PM_2.5) health impacts: Recommended characterization factors (CFs) for primary and secondary (interim) PM_2.5 are established, distinguishing between indoor, urban and rural archetypes. Water consumption impacts: CFs are recommended, preferably on monthly and watershed levels, for two categories: (a) The water scarcity indicator “AWARE” characterizes the potential to deprive human and ecosystems users and quantifies the relative Available WAter REmaining per area once the demand of humans and aquatic ecosystems has been met, and (b) the impact of water consumption on human health assesses the DALYs from malnutrition caused by lack of water for irrigated food production. Land use impacts: CFs representing global potential species loss from land use are proposed as interim recommendation suitable to assess biodiversity loss due to land use and land use change in LCA hotspot analyses.

Conclusions

The recommended environmental indicators may be used to support the UN Sustainable Development Goals in order to quantify and monitor progress towards sustainable production and consumption. These indicators will be periodically updated, establishing a process for their stewardship.

     

Epidemiology and eradication of infectious bovine rhinotracheitis/infectious pustular vulvovaginitis (IBR/IPV) virus in Finland

Background  

Infectious bovine rhinotracheitis/infectious pustular vulvovaginitis (IBR/IPV) is a significant disease among domestic and wild cattle. The BHV-1 infection was first detected in Finland in 1970; presumably it was imported in 1968. The infection reappeared in the large-scale bulk-tank milk surveillances which started in 1990, and was eradicated in 1994. Our aim is to describe the epidemiology of this infection in Finland, and its eradication.     

Water scarcity footprint of primary aluminium

Purpose

The cradle-to-gate water scarcity footprint (WSFP) of primary aluminium has been determined for global aluminium including China (GLO) and global aluminium excluding China (RoW). It consists of the following:

• the direct WSFP, based on the freshwater consumption data collected by the IAI from global bauxite mines, alumina refiners and aluminium smelters and the local water scarcity index (WSI) of each plant, and
• the indirect WSFP which has been calculated using data collected by thinkstep on the freshwater consumption of the different ancillary materials, of the fuel and of the electricity needed for the production of alumina and aluminium and the relevant water scarcity indexes.

Methods

The calculation of the direct WSFP follows the requirement of ISO 14046 to aggregate data of sites at locations with different water scarcity after multiplication with the local water scarcity index.For the indirect WSFP, regional averages of the water consumption and water scarcity index were used for an initial screening study to determine fields for further investigation. Results of this study demonstrate that data on evaporation of water from reservoirs of hydropower plants has an extremely high contribution to the indirect WSFP of primary aluminium (79 % of the GLO value and 92 % of the RoW value).Therefore, a plant-by-plant approach was applied for hydropower which considers the net freshwater consumption of the hydropower reservoirs and uses the local water scarcity index of each power station, individually, for the calculation of the generic WSFP of the country or region. A special treatment has been given to some multipurpose reservoirs which typically have a beneficial effect on water scarcity, i.e. they have a negative WSFP if seasonal water scarcity indices are used.

Results and discussion

With this approach, the WSFP of primary aluminium has been calculated as follows:

• 18.2 m³ H₂Oe./tonne for global primary aluminium (GLO);
• 9.6 m³ H₂Oe/tonne for global primary aluminium, excluding China (RoW).

Conclusions

In order to avoid distorted results of water footprint studies, in depth analysis of identified hotspots in water consumption is necessary, in this case the plant-by plant approach, in accordance with ISO 14046. Data providers are encouraged to facilitate such analysis by improving the accessibility of such detailed data.

     

Thin-film fixed-bed reactor (TFFBR) for solar photocatalytic inactivation of aquaculture pathogen <Emphasis Type="Italic">Aeromonas hydrophila</Emphasis>

Background  

Outbreaks of infectious diseases by microbial pathogens can cause substantial losses of stock in aquaculture systems. There are several ways to eliminate these pathogens including the use of antibiotics, biocides and conventional disinfectants, but these leave undesirable chemical residues. Conversely, using sunlight for disinfection has the advantage of leaving no chemical residue and is particularly suited to countries with sunny climates. Titanium dioxide (TiO₂) is a photocatalyst that increases the effectiveness of solar disinfection. In recent years, several different types of solar photocatalytic reactors coated with TiO₂ have been developed for waste water and drinking water treatment. In this study a thin-film fixed-bed reactor (TFFBR), designed as a sloping flat plate reactor coated with P25 DEGUSSA TiO₂, was used.     

Seroepidemiological study of Q fever in domestic ruminants in semi-extensive grazing systems

Background  

Q fever, a worldwide zoonotic disease caused by Coxiella burnetii, is endemic in northern Spain where it has been reported as responsible for large series of human pneumonia cases and domestic ruminants' reproductive disorders. To investigate pathogen exposure among domestic ruminants in semi-extensive grazing systems in northern Spain, a serosurvey was carried out in 1,379 sheep (42 flocks), 626 beef cattle (46 herds) and 115 goats (11 herds). Serum antibodies were analysed by ELISA and positive samples were retested by Complement Fixation test (CFT) to detect recent infections.     

Taking into account water use impacts in the LCA of biofuels: an Argentinean case study

Purpose  

The assessment of biofuels has until now mainly focused on energy demand and greenhouse gas emissions. Only little attention has been given to other impacts, although the general importance of water use for the life cycle assessment (LCA) of agricultural products has been recognized in recent publications. The aim of this work is to assess in detail the water consumption along a biofuel production chain taking into account irrigation efficiencies, levels of water scarcity, and type of feedstock, and to integrate those results in a full LCA. Furthermore, we compare the results for biofuels from various feedstocks and regions with conventional petrol.