Effects of Temperature and Turbulence on the Predator–Prey Interactions between a Heterotrophic Flagellate and a Marine Bacterium

Biotic and abiotic factors can influence interactions between microbial grazers and their prey, thus impacting both the cycling of biogenic carbon within the surface layer of the ocean and the export of carbon to the deep ocean and higher trophic levels. In this study, microcosm experiments were used to evaluate the combined effect of temperature and turbulence on the growth rate of a marine bacterium (Vibrio splendidus), a protistan predator (Paraphysomonas sp.), and the community grazing impact of Paraphysomonas sp. on V. splendidus. It was found that the artificial turbulence generated (1.35 × 10⁻¹ cm² s⁻³) significantly increased the rates of growth of Paraphysomonas sp. at high (>10°C), but not low (<5°C) temperatures, and that turbulence had no effect on the growth of V. splendidus. Both flagellate and bacterial growth were temperature dependent and decreased 4- to 6-fold as temperatures decreased from 15 to 0°C. Bacterial grazing mortality by Paraphysomonas sp. was 1.3- to 2.5-fold greater in the turbulent than static treatments among all four temperatures, and the rates of cell-specific ingestion of bacteria by Paraphysomonas sp. was 2-fold greater at 15 and 10°C in the turbulent than in the static treatment. Hence, this study shows that turbulence can influence nanoflagellate grazing at temperatures >5°C and suggests that at low temperatures, increased viscosity may limit the size of organisms that can be affected by small-scale turbulence.Present address (M.P. Delaney): Goddard Earth Sciences & Technology Center, NASA Goddard Space Flight Center, Mail Code 900.1, Greenbelt, MD 20771     

Interactions between k-Casein and β-Lactoglobulin: Effects of Anions on Covalent Stabilization of the Complex

Structure breaking anions, trichloroacetate ( — TCA~) and thiocyanate ( — SCN~), significantly increased the interaction between 7c-casein (K-C) and /Mactoglobulin (B-Lg) to give the covalently stabilized K-C/B-Lg tetrameric (A4) complex, whereas “structure making” anions, chloride ( — Cl^-) and especially sulfate ( —SO4), reduced it. The reactivity of K-C with B-Lg in the presence of these anions followed the order, — TCA~ > — SCN~ > — Cl” > — SO4 (100mm). The percentile distribution of the covalent bonded K-C/B-Lg A4 complex after 720 s of heating at 70°C in — TCA~ (lOOmm) was one order greater than it was in — SO^- During storage of the heated K- C/B-Lg mixture, the B-Lg A3/K-C interaction in — TCA~ was rapid and uneffected by the holding temperature, whereas in — SO4, the reaction rate was inversely related to the temperature, being apparently controlled by the relative concentration of monomeric K-C.     

Interactions between a soil fungus,Trichoderma harzianum,and IIb metals—adsorption to mycelium and production of complexing metabolites

Fungi are capable of accumulating metals and, in soil, such accumulation may influence metal speciation and transport. The interactions between a common soil fungus, Trichoderma harzianum, and IIb elements were studied in the present investigation. The accumulation of the metals zinc, cadmium and mercury by starved and non-starved mycelium at different pH was determined by a batch technique using radioactive tracers; uptake of the metals was found to be large, with respective distribution coefficients of about 10^3.5, 10^2.5 and 10^4.0 for zinc, cadmium and mercury, respectively. Metal accumulation by a starved system was largely independent of pH in the range 3–9, where in a non-starved system an increased accumulation of zinc (at 10^– m) was observed at low pH (3–5). Potentiometric titrations performed on the two systems revealed significant differences in acid capacities, i.e. values close to zero for the starved system and 500–800 meq kg^– for the non-starved system. The maximum metal uptake was at least 50 mmol kg^– at pH 6.5 (calculated from adsorption isotherms). The present findings suggests that in the non-starved system a metabolite is produced and then released when the pH is within a certain range.     

Interactions between a commercial preparation of Bacillus thuringiensis and β-exotoxin in the fall armyworm,Spodoptera frugiperda

A commercial preparation of Bacillus thuringiensis (Dipel) and its β-exotoxin were assayed alone and in combination against neonate (3- to 6-hr-old) fall armyworm, Spodoptera frugiperda, larvae using a microdroplet technique. Positive dosage-mortality response curves were determined for each agent. Combination bioassays were then conducted using dosages based on these curves. Presence or absence of interactions was determined by comparing mortality levels from the combination assays with expected mortality levels using single degree of freedom χ² tests. Synergism occurred in 14 of 18 combinations of B. thuringiensis and β-exotoxin tested. Four combinations, all of which contained low individual dosages, exhibited additivity of effects. Maximum deviation of observed from expected mortality occurred at the combination of LC₃₀ for B. thuringiensis plus LC₃₀ for β-exotoxin (observed = 100%, expected = 51%). The data suggested that both agents were contributing to the synergism in this system, but that B. thuringiensis was a slightly stronger synergist than β-exotoxin.     

Effects of the Interactions between Dust Exposure and Genetic Polymorphisms in Nalp3, Caspase-1, and IL-1β on the Risk of Silicosis: A Case-Control Study

Objectives

To evaluate the effects of the interactions between polymorphisms in Nalp3, caspase-1, and interleukin(IL)-1β genes and occupational dust exposure on the risk of silicosis.

Methods

We conducted a population-based case-control study in a large iron mine in China. Between January 2006 and December 2009, we identified 179 patients with silicosis to evaluate as cases and 201 individuals without silicosis to evaluate as controls. We estimated cumulative dust exposure (CDE) for all subjects and we genotyped polymorphisms in Nalp3, caspase-1, and IL-1β genes. We estimated odds ratios(ORs), 95% confidence intervals(95%CIs), and p-values using logistic regression models adjusted for selected confounders.

Results

After adjusting for age, smoking status, and CDE, subjects with the CT genotype of Ex4-849C>T in Nalp3 and the GA genotype of Ex2+37G>A in caspase-1 had increased risks of silicosis (adjusted ORs[95%CIs] = 2.40 [1.12–5.12] and 3.62 [1.63–8.02], respectively). Among subjects younger than 70 years old, those with the CC genotype of IVS8-7652A>C in Nalp3 had a lower risk of silicosis than those with other genotypes (adjusted OR[95%CI] = 0.24[0.06–0.88]). Among subjects aged 70 years and older, those with the CT genotype of Ex4-849C>T in Nalp3 and those with the GA genotype of Ex2+37G>A in caspase-1 had a higher risk of silicosis than those with other genotypes (adjusted ORs [95%CI] = 2.52[1.04–6.12] and 5.19[1.88–14.35], respectively). Among subjects with CDE greater than 120 mg/m³×year and among smokers, those with the GA genotype of Ex2+37G>A in caspase-1 had a higher risk of silicosis than those with other genotypes (adjusted ORs[95%CIs] = 26.37[3.35–207.39] and 3.47[1.40–8.64], respectively).

Conclusions

Genetic polymorphisms in Nalp3 and caspase-1 may be associated with individual susceptibility to silicosis, especially when the polymorphisms interact with age, CDE, or smoking status.     

Bioremediation of a petroleum‐contaminated cryic soil: Effects of phosphorus,nitrogen, and temperature

Bioremediation has been shown to be an effective means of treating petroleum‐contaminated soils in cold areas, although the conditions required to maximize bioremediation in cold region (cryic) soils are not well documented. A laboratory study was conducted to investigate the effects of nitrogen and phosphorus levels and temperature on petroleum bioremediation. A cryic entisol contaminated with diesel fuel was treated with nitrogen (0, 400, 800, or 1200 mg/kg of soil) and phosphorus (0, 60, 120, or 180 mg/kg of soil) and incubated at two temperatures (10 and 20°C). At 10°C, bioremediation rates were not affected by fertility treatments. At 20°C, reaction rates were increased by the addition of P, but unaffected by N. Regardless of fertility regime, the rate of diesel loss was much greater in soil incubated at 20°C than in soil incubated at 10°C.     

Effects of desertification on the C:N:P stoichiometry of soil,microbes, and extracellular enzymes in a desert grassland北大核心CSCD

Aims In order to discuss the underlying mechanism of desertification effect on the ecological stoichiometry of soil, microbes and extracellular enzymes, we studied the changes of soil, soil microbial and extracellular enzyme C:N:P stoichiometry during the desertification process in the desert grassland in Yanchi County, China. Methods The “space-for-time” method was used. Important findings The results demonstrated that: (1) Soil C, N, P contents and soil C:P, N:P significantly decreased, but soil C:N gradually increased with increasing desertification. (2) Soil microbial biomass C (MBC):soil microbial biomass P (MBP), soil microbial biomass N (MBN):MBP and soil β-1,4-glucosidase (BG):β-1,4-N-acetylglucosaminidase (NAG) gradually decreased, soil BG:alkaline phosphatase (AP) and NAG:AP basically showed an increasing trend with increasing desertification. (3) Desertification increased the soil microbial carbon use efficiency (CUE C : N and CUE C : P ) gradually, while soil microbial nitrogen use efficiency (NUE N : C ) and soil microbial phosphorus use efficiency (PUE P : C ) basically decreased. (4) Soil, soil microbial and soil extracellular enzyme C:N stoichiometry (C:N, MBC:MBN, BG:NAG) were significantly negatively correlated with the soil, soil microbial and extracellular enzyme N:P stoichiometry (N:P, MBN:MBP, NAG:AP), the soil and extracellular enzymes C:N (C:N, BG:NAG) were significantly positively correlated with the soil and extracellular enzymes C:P (C:P, BG:AP). Soil N:P was significantly positively correlated with the soil MBN:MBP, but was significantly negatively correlated with the soil NAG:AP. The analysis demonstrated that soil microbial biomass and extracellular enzyme activity changed with soil nutrient during the desertification process in the desert grassland. The co-variation relationship between soil nutrient and C:N:P stoichiometry of microbial-extracellular enzyme provides a theoretical basis for understanding the underlying mechanism of C, N, P cycling in the soil-microbial system in desert grasslands. © 2018 Editorial Office of Chinese Journal of Plant Ecology. All Rights Reserved.     

Relationships between Scotch broom (Cytisus scoparius), soil nutrients, and plant diversity in the Garry oak savannah ecosystem

Scotch broom (Cytisus scoparius), is a leguminous shrub, native to the Mediterranean, which has invaded most of the remaining Garry oak savannah ecosystems in Oregon, Washington, and British Columbia. Here, it is considered to be a threat to the native plant community. We tested the hypothesis that broom would increase available soil nitrogen by comparing soil nutrients in contiguous broom-invaded and non-invaded sites. We then looked for changes in patterns of diversity in the herbaceous community that might indicate a role of Scotch broom in changing conditions following its invasion. Finally we carried out greenhouse assays to test whether broom had a greater impact on the growth of a native and an introduced grass compared to that of a native shrub. Broom was associated with only a weak trend in increased soil nitrogen, but a significant decrease in soil phosphorus was observed. Patterns of plant diversity differed between two sites. At one site, 60% of the plants whose abundances increased in the broom-invaded plots were introduced species while native species abundances decreased in the broom-invaded plots compared to broom-free plots. At the other site, 60% of the plants that caused the differences between broom-invaded and un-invaded plots were native species that were less abundant in the broom-invaded plots. Finally, in greenhouse assays grass growth was not affected as a result of being grown with broom; however, grasses appeared to produce more flowers when grown with broom. We conclude that broom does not necessarily modify soil nitrogen availability but may deplete soil phosphorus availability and that broom invasion can be associated with increase of exotic species and/or the decline of native species.     

Interactions between different predator–prey states: a method for the derivation of the functional and numerical response

Journal of Mathematical Biology - In this paper we introduce a formal method for the derivation of a predator’s functional response from a system of fast state transitions of the prey or...     

Interactions between phytoplankton,zooplankton and fish in a shallow,hypertrophic lake: a study of phytoplankton collapses in Lake Søbygård,Denmark

Since 1983 severe phytoplankton collapses have occurred 1–4 times every summer in the shallow and hypertrophic Lake Søbygård, which is recovering after a ten-fold decrease of the external phosphorus loading in 1982. In July 1985, for example, chlorophyll a changed from 650 µg l^–1 to about 12 µg 1^–1 within 3–5 days. Simultaneously, oxygen concentration dropped from 20–25 mg O₂l^–1 to less than 1 mg O₂l^–1, and pH decreased from 10.7 to 8.9. Less than 10 days later the phytoplankton biomass had fully recovered. During all phytoplankton collapses the density of filter-feeding zooplankton increased markedly, and a clear-water period followed. Due to marked changes in age structure of the fish stock, different zooplankton species were responsible for the density increase in different years, and consequently different collapse patterns and frequencies were observed.The sudden increase in density of filter-feeding zooplankton from a generally low summer level to extremely high levels during algae collapses, which occurred three times from July 1984 to June 1986, could neither be explained by changes in regulation from below (food) nor from above (predation). The density increase was found after a period with high N/P ratios in phytoplankton or nitrate depletion in the lake. During that period phytoplankton biomass, primary production and thus pH decreased, the latter from 10.8–11.0 to 10.5. We hypothesize that direct or indirect effects of high pH are important in controlling the filter-feeding zooplankton in this hypertrophic lake. Secondarily, this situation affects the trophic interactions in the lake water and the net internal loading of nutrients. Consequently, not only a high content of planktivorous fish but also a high pH may promote uncoupling of the grazing food-web in highly eutrophic shallow lakes, and thereby enhance eutrophication.A tentative model is presented for the occurrence of collapses, and their pattern in hypertrophic lakes with various fish densities.     

Interactome of signaling networks in wheat: the protein–protein interaction between TaRAR1 and TaSGT1

RAR1 and SGT1 are required for development and disease resistance in plants. In many cases, RAR1 and SGT1 regulate the resistance (R)-gene-mediated defense signaling pathways. Lr21 is the first identified NBS-LRR-type R protein in wheat and is required for resistance to the leaf rust pathogen. The Lr21-mediated signaling pathways require the wheat homologs of RAR1, SGT1, and HSP90. However, the molecular mechanisms of the Lr21-mediated signaling networks remain unknown. Here I present the DNA and protein sequences of TaRAR1 and TaSGT1, and demonstrate for the first time a direct protein-protein interaction between them.     

Effect of growth culture physiological state,metabolites, and formulation on the viability,phytotoxicity, and efficacy of the take-all biocontrol agent Pseudomonas fluorescens 2–79 stored encapsulated on wheat seeds

Strain 2–79 is a biocontrol agent of take-all, an important root disease of wheat caused by Gaeumannomyces graminis var. tritici. In the rhizosphere, strain 2–79 produces the antibiotic phenazine-1-carboxylic acid as the primary means of disease suppression. Barriers to the commercial use of phenazine-producing pseudomonads, such as strain 2–79, include the lack of liquid-culture and formulation technologies needed to optimize cost-effective mass production and application. For instance, there is little published research concerning the impact of growth culture physiological state and associated metabolites on the biocontrol qualities of the cells harvested and formulated in seed coatings, i.e., efficacy, phytotoxicity, and storage survival. To enable exploration of these issues, cells of strain 2–79 in various physiological states were obtained by harvesting fermentors at 24-h intervals after inoculation. Cells formulated in 0.5% methylcellulose suspended in either water (MW) or metabolite-bearing, spent culture broth (MSB) were applied as wheat-seed coatings, air dried, and stored at 4°C. Younger cells (24–48?h) had twice the drying survival rate but only half of the storage life demonstrated by older cells (72–96?h) (P?0.05). Cell populations surviving drying were 3.5 times higher in MW than in MSB formulations and they remained viable up to 3 times longer (P?0.05). This effect of formulation on viability was attributable to the culture nutrients but not the metabolites present in the spent broth. Disease suppression in bacterized seed treatments was significant (P?0.05) relative to unbacterized controls and averaged 9.1%, but did not vary significantly (P?0.24) with culture age, encapsulation medium, or storage time. Relative seedling height improvement increased with relative disease suppression (P=0.003) and significantly decreased with lengthening storage time (P=0.004). This latter decline in plant growth promotion coincided with the deterioration of biocontrol agent viability during storage. Seed batches inoculated with cells in both MW and MSB encapsulations suffered significant germination losses due to phytotoxic metabolites. The extent of loss was an interactive result of encapsulation medium and storage time (P?0.01), and the rate of loss was much higher for seeds with MSB than with MW coatings, i.e. 54% compared to 11% loss after 6 months storage.     

Effect of tillage and straw return on carbon footprints,soil organic carbon fractions and soil microbial community in different textured soils under rice–wheat rotation: a review

Reviews in Environmental Science and Bio/Technology - Measuring the influence of long-term agricultural tillage practices on soil organic carbon (SOC) is of great importance to farmers and...     

Effects of pasture introduction on soil CO2 emissions during the dry season in the state of Rondônia,Brazil

Soil CO₂ evolution rates, soil temperatures and moisture were measured during the dry season in two forest-to-pasture chronosequences in Rondônia, Brazil. The study included pastures ranging from 3 to 80 years-old. Mean dry-season CO₂ evolution from the forest in chronosequence 1, 88.8 mg CO₂-C m^–2h^–1 was lower than from the pastures which ranged from 111 to 158 mg CO₂-C m^–2h^–1. We found that temperature was not a good predictor of CO₂ emissions from pasture but that there was a significant relationship (r = 0.72,p < 0.05) between soil moisture and pasture emissions. The ¹³C of the soil CO₂ emissions also was measured on chronosequence I; ¹³C of the CO₂ emitted from the C3 forest was –29.43%. Pasture¹³CO₂ values increased from –17.91%. in the 3 year-old pasture to –12.86% in the 80 year-old, reflecting the increasing C₄ inputs with pasture age. Even in the youngest (3 year-old) pasture, 70 percent of the CO₂ evolved originated from C₄ pasture-derived carbon.     

Efficiency of soil and fertilizer nitrogen of a sod–potato system in the humid,acid and cool environment

It was hypothesized that soil N variability, and fertilization and cropping management affect potato (Solanum tuberosum L.) growth and fertilizer N efficiency. Following a 20-year sod breakup on a loamy soil in eastern Quebec, Canada (46°37 N, 71°47 W), we conducted a 3-year (1993–1995) study to investigate the effects of soil pool N and fertilizer N management on non-irrigated potato (cv. Superior) tuber yield, fertilizer N recovery (NRE), and residual N distribution in soils under humid, cool and acid pedoclimatic conditions. The fertilizer N treatments consisted of a control, side-dress at rates of 70, 105 and 140 kg ha^–1, and split applications (at seeding and bloom) at rates of 70+70, 105+70 and 140+70 kg ha^–1, respectively. Soil acidity was corrected with limestone following the plow down of the sod. Years of cropping, main effect of N treatment, and year and fertilizer N interaction were significant on total and marketable tuber yields and N uptake, which were significantly related to soil N, and root growth. Apparent NRE ranged between 29 and 70%, depending on years and N rates. Total tuber yield, N uptake, soil N use and NRE were significantly higher in the first (sod–potato) year, but decreased by 41.8, 22.7, 21.4 and 14.7%, respectively, in the third (sod–potato–potato–potato) year. Initial soil N pool was declined by 75% following the 3-year cropping. In 2–3 years, the side-dress N (140 kg ha^–1) increased significantly tuber yields (11.4–19.8%) compared to the split N (70+70 kg ha^–1). Higher split N had no effect on tuber yield and N uptake but increased residual N at harvest. Unused fertilizer N was strongly linked (R ²=0.98) to fertilizer N rates. Time factor and N treatment had significant effects (P<0.0001) on loss of N to below the root zone. Smaller scale rate and timing of split N need to be further determined. Increasing fertilizer N use efficiency could be expected with sod breakup and 75% of regional recommendation rate under humid, cool and acid pedoclimatic conditions.     

Nitrogen uptake by crops,soil distribution and recovery of urea-N in a sorghum—wheat rotation in different soils under Mediterranean conditions

The N uptake by crops, soil distribution and recovery of 15N labelled urea-N (100 kg N ha-1) were investigated in a sorghum-wheat rotation in two silty clay soils (Foggia and Rieti Casabianca) and one silt loam soil (Rieti Piedifiume) under different mediterranean conditions. Non-exchangeable labelled NH4-N represented an important pool at both Rieti sites with higher values (p<0.05) under sorghum (14.0 and 24.6% of the urea N in the 0-20 cm layer at the end of the cropping season) than wheat whereas it was much less important in the Foggia soil (10.0% in the surface soil under sorghum). This is probably related to the clay minerals composition of the three soils; because vermiculite was present in both Rieti sites but not in the Foggia soil. At harvest from 4.4 to 5.3% of the urea N initially applied was present as microbial biomass N in the surface soil layer with no generally significant differences due to location and type of crops. Both sorghum and wheat N yields were higher in the driest site (Foggia) probably due to better light conditions, higher temperatures and irrigation during summer of the sorghum cropping period. The recovery of plant fertilizer N (about 21% for sorghum and 27% for wheat) and the percentage of N in the plant derived from the fertilizer (NDFF) were the lowest at Rieti-Casabianca probably as the result of the protection of immobilized fertilizer N against microbial mineralization by the swelling clays. The fertilizer N unaccounted for was nil or very low (10.8% at Rieti-Casabianca under wheat and 11.8 and 4.9% at Rieti-Piedifiume under sorghum and wheat, respectively). Urea-N losses occurred when Rieti Piedifiume and Rieti Casabianca soils were kept bare. In this case the urea N unaccounted for ranged from 12 to 56% of the urea N with higher losses in Rieti-Piedifiume than in Rieti-Casabianca. The higher recoveries in the latter soil were probably confirmed by the stabilizing effect of clays on the immobilized urea N. This revised version was published online in July 2006 with corrections to the Cover Date.     

Empirical prediction of net splanchnic release of ketogenic nutrients,acetate, butyrate and β-hydroxybutyrate in ruminants: a meta-analysis

For energy feeding systems for ruminants to evolve towards a nutrient-based system, dietary energy supply has to be determined in terms of amount and nature of nutrients. The objective of this study was to establish response equations of the net hepatic flux and net splanchnic release of acetate, butyrate and β-hydroxybutyrate to changes in diet and animal profiles. A meta-analysis was applied on published data compiled from the FLuxes of nutrients across Organs and tissues in Ruminant Animals database, which pools the results from international publications on net splanchnic nutrient fluxes measured in multi-catheterized ruminants. Prediction variables were identified from current knowledge on digestion, hepatic and other tissue metabolism. Subsequently, physiological and other, more integrative, predictors were obtained. Models were established for intakes up to 41 g dry matter per kg BW per day and diets containing up to 70 g concentrate per 100 g dry matter. Models predicted the net hepatic fluxes or net splanchnic release of each nutrient from its net portal appearance and the animal profile. Corrections were applied to account for incomplete hepatic recovery of the blood flow marker, para-aminohippuric acid. Changes in net splanchnic release (mmol/kg BW per hour) could then be predicted by combining the previously published net portal appearance models and the present net hepatic fluxes models. The net splanchnic release of acetate and butyrate were thus predicted from the intake of ruminally fermented organic matter (RfOM) and the nature of RfOM (acetate: residual mean square error (RMSE)=0.18; butyrate: RMSE=0.01). The net splanchnic release of β-hydroxybutyrate was predicted from RfOM intake and the energy balance of the animals (RMSE=0.035), or from the net portal appearance of butyrate and the energy balance of the animals (RMSE=0.050). Models obtained were independent of ruminant species, and presented low interfering factors on the residuals, least square means or individual slopes. The model equations highlighted the importance of considering the physiological state of animals when predicting splanchnic metabolism. This work showed that it is possible to use simple predictors to accurately predict the amount and nature of ketogenic nutrients released towards peripheral tissues in both sheep and cattle at different physiological status. These results provide deeper insight into biological processes and will contribute to the development of improved tools for dietary formulation.