Microbial degradation of polycyclic aromatic hydrocarbons in soils affected by the organic matrix of compost

This paper describes the degradation of naphthalene, phenanthrene, anthracene, fluoranthene, and pyrene in soil and soil/compost mixtures. Compost addition facilitated the degradation of 500 mg naphthalene/kg soil and 100 mg/kg each of other polycyclic aromatic hydrocarbons (PAH) within 25 days in soil systems with water contents below the water-holding capacity. By means of a humic acid extraction, it was demonstrated that the decrease of PAH concentrations after compost addition was not caused by a sorption to organic matter preventing PAH analysis. The enhanced PAH degradation was examined in a series of batch experiments with contaminated soil to evaluate whether the effect of compost addition is caused by the microorganisms of the compost itself, by the properties of the organic matrix of the compost material, or by water-soluble fertilising substances. The experiments revealed that the release of fertilising substances from the compost and the shift of soil pH brought about by the compost did not cause the stimulatory effect. The microorganisms inherent to the compost were also not necessary for the enhanced degradation. Sterilised compost was recolonised by soil microorganisms after a lagphase yielding a degradation activity similar to that of the non-sterilised compost. The presence of the solid organic matrix of the compost seemed to be essential for the enhanced degradation. The soil/compost microflora, which was separated from the organic matrix in liquid cultures, exhibited a much lower degrading activity than in the presence of the solid organic material.     

Chemical changes in humic substances from compost due to incubation with ligno-cellulolytic microorganisms and effects on lettuce growth

 Differences in the chemical properties of the organic matter from a highly lignocellulosic compost after incubation with two ligno- and cellulolytic microorganisms were studied in this work. Inoculation with either of the two microorganisms assayed, Trichoderma viride or Bacillus sp., of soil-compost mixtures enhanced degradation processes and the degree of organic matter humification. According to the humification index, inoculation with T. viride produced the highest humification rate in all the compost-soil proportions studied (10, 20 and 30%). To evaluate the quality of the extracted humic substances according to their electrofocusing behaviours a new index was established. This index showed an increased yield of humic substances of the lowest electrophoretic mobility (highest molecular weight) in treatments inoculated with Bacillus sp., whereas inoculation with T. viride enhanced the formation of molecules of the fastest electrophoretic mobility. These results, together with the fibre analysis performed, showed that the nature of the humic substances produced after incubation appeared to depend greatly on the degradation pathway carried out by the inoculated microorganism, T. viride or Bacillus sp.. Both degradation-humification pathways beneficially affected lettuce growth, demonstrating that inoculation with any of these two microorganisms may be a useful tool to modify agronomic properties of unripe composts. Received: 2 August 1995/Received revision: 14 November 1995/Accepted: 11 December 1995     

城市污泥堆肥用作草皮基质对草坪草生长的影响

研究了城市污泥堆肥生产草坪基质的应用效果。试验结果表明,城市污泥堆肥基质能明显提高黑麦草的地上和地下生物量和叶绿素含量,与不施化肥和施用化学的对照相比,城市污泥堆肥可以增加土壤有效态氮、磷含量,促进植物叶片对氮的吸收,提高草坪的质量。用经过无害化处理的城市污泥生产草坪基质,既可以解决城市污泥的出路,又可以降低草坪的生产成本,是一条经济可行的途径。     

Long-term Effect of Municipal Solid Waste Amendment on Microbial Abundance and Humus-associated Enzyme Activities Under Semiarid Conditions

Microbial ecology is the key to understanding the function of soil biota for organic matter cycling after a single amendment of organic waste in semiarid soils. Therefore, in this paper, the long-term effect (17 years) of adding different doses of a solid municipal waste to an arid soil on humus–enzyme complexes, a very stable and long-lasting fraction of soil enzymes, as well as on microbial and plant abundance, was studied. Humic substances were extracted by 0.1 M pH 7 sodium pyrophosphate from soil samples collected in experimental plots amended with different doses of a solid municipal waste (0, 65, 130, 195, and 260 t/ha) 17 years before. The activity of different hydrolases related with the C (β-glucosidase), N (urease), and P (alkaline phosphatase) cycles and with the formation of humic substances (o-diphenol oxidase) were determined in this extract. The density and diversity of plant cover in the plots, as well as the fungal and bacterial biomass (by analyzing phopholipid fatty acids) were also determined. In general, the amended plots showed greater humic substance-related enzymatic activity than the unamended plots. This activity increased with the dose but only up to a certain level, above which it leveled off or even diminished. Plant diversity and cover density followed the same trend. Fungal and bacterial biomass also benefited in a dose-dependent manner. Different signature molecules representing gram+ and gram− bacteria, and those corresponding to monounsaturated and saturated fatty acids showed a similar behavior. The results demonstrate that organic amendment had a noticeable long-term effect on the vegetal development, humic substances-related enzyme activity and on the development of bacteria and fungi in semiarid conditions.     

Biodegradation behavior of natural organic matter (NOM) in a biological aerated filter (BAF) as a pretreatment for ultrafiltration (UF) of river water

In this study, biodegradation of natural organic matter (NOM) in a biological aerated filter (BAF) as pretreatment of UF treating river water was investigated. Photometric measurement, three-dimensional excitation–emission matrix (EEM) fluorescence spectroscopy and liquid chromatography with online organic carbon detector (LC-OCD) were used to investigate the fate of NOM fractions in the BAF + UF process. Results showed that the BAF process could effectively remove particles and parts of dissolved organic matter, which led to a lower NOM loading in the UF system, but different NOM fractions showed different biodegradation potentials. Further biodegradation batch experiments confirmed this observation and identified that polysaccharides and proteins (quantified using photometric methods) contained a large proportion of readily biodegradable matter while humic substances were mainly composed of inert organic substances. According to EEM measurements, it is evident that protein-like substances were more readily eliminated by microorganisms than humic-like substances. LC-OCD data also supported the phenomena that the polysaccharides and large-size proteins were more degradable than humic substances.     

Hyphal growth and mycorrhiza formation by the arbuscular mycorrhizal fungus Glomus claroideum BEG 23 is stimulated by humic substances

Effects of humic substances (humic acid or fulvic soil extract) or saprophytic microorganisms (Paecilomyces lilacinus and an unidentified actinomycete) on growth of mycelium and mycorrhiza formation by Glomus claroideum BEG23 were studied in a hydroponic system. Humic substances stimulated root colonization and production of extraradical mycelium by the mycorrhizal fungus. Both humic and fulvic acids tended to decrease populations of culturable bacteria and fungi in the cultivation system, indicating a moderately antibiotic activity. The addition of saprophytic microorganisms able to use humic substances to the cultivation system further stimulated the development of the mycorrhizal fungus. However, stimulation of G. claroideum was also observed when the saprophytic microorganisms were heat-killed, suggesting that their effect was not linked to a specific action on humic substances. The results indicate that humic substances may represent a stimulatory component of the soil environment with respect to arbuscular mycorrhizal fungi.     

Transformations of carbon and nitrogen in a Calciorthid soil amended with a range of organic residues

A calcareous soil was treated with an organic fertilizer mixture of grape debris and peat, or with pig manure, chicken manure, city refuse or with aerobic or anaerobic sewage sludges. Changes in different fractions of carbon and nitrogen were followed by analysis of the soil, immediately after these additions, after they had decomposed for six months in the soil, after a maize harvest, and after a subsequent barley harvest. The various forms of carbon had decreased after six months. The rate of decrease varied with the nature of the organic materials. In all samples, the fulvic acids fraction decreased most. The main transformations happened during the first six months whether there was a crop growing or not, but the crops had no influence on the breakdown of the organic materials. The ratio of humic acids/fulvic acids had increased after six months of humification and, in general terms, the final values of the ratio oxidizable carbon/extractable carbon were lower than the initial ones, indicating a higher degree of humification in the organic matter by the end of the experiment. The total nitrogen level remained practically constant after the first six months of humification even after the second crop. Part of the organic nitrogen of the soil samples amended with chicken manure, city refuse or the two sludges was transformed into mineral nitrogen during the humification process. The extractable nitrogen values increased because of the fertilizer applied during the pot trials.     

The influence of topography on the nature of humic substances in soil organic matter at a site in the Atlantic Coastal Plain of South Carolina

The effect of topography on the nature of humic substances, isolated as water soluble organic carbon (WSOC), fulvic acid (FA), and humic acid (HA) was evaluated by comparing relative proportion and chemical characteristics of these fractions in upland and bottomland Coastal Plain soils in South Carolina. The fractions were characterized by elemental analysis and¹³C cross-polarization magic angle spinning nuclear magnetic resonance (CPMAS NMR) spectroscopy. The majority of humic substances occur as humic acids, with bottomland soils having higher HA/FA ratios when compared to upland soils. We found no significant differences between upland and bottomland humic substances with respect to yields of WSOC and fulvic acids, and in the C and N content of humic and fulvic acids. Carbon-13 CPMAS NMR spectroscopy revealed that the WSOC and fulvic acid fractions were composed largely of O-alkyl-C structures with bottomland soils having higher amounts of these groups. Humic acid C distribution was similar between upland and bottomland soils and was largely composed of aromatic groups. Our results demonstrate that topography influences the formation of humic acid and the structural and chemical properties of the various humic fractions.requests for offprints     

Efficacy of organic wastes amendment on the establishment and biomass yield of grass species on a degraded Alfisol

Abstract

Deficiencies of organic matter and essential nutrients are important features of derelict/degraded lands; these characteristics have profound effects on the establishment of functional soil-plant systems on such lands. This work reports on the impact of organic wastes amendments on the establishment, growth and biomass yield of grass mixtures grown on a degraded soil. The experimental site was a heavily compacted and eroded land due to excavation (scrapping) of topsoil layer for urban construction activities. Zero, 10 and 20cm layers each of substrates collected from an old (abandoned) municipal refuse and from site affected by long-term surface disposal of livestock litter and topsoil collected under fallow vegetation were applied on soil surface, before the establishment of a mixture of grass species. Substrates collected from old municipal refuse contained high amount of essential nutrients and metals and, on application, produced upward shift in soil pH and electrical conductivity. Nevertheless, these properties neither significantly retarded plant growth nor impaired biomass yield. Plant establishment and biomass yield were comparable under topsoil application and organic waste amended soil and produced significantly higher biomass yield when spread at 20cm layers were made of them. This experimental group also produced superior biomass yield over the unamended control. The agronomic benefits of organic waste incorporation stemmed from improved soil properties in surface horizon and contents of essential nutrients supportive of the establishment and development of plant cover. Nutrient supply is related to soil organic matter status, organic wastes are therefore important to the reconstruction of effective nutrient cycling and the eventual functional soil-plant system on this degraded ecosystem. The goal of these revegetation efforts is to improve soil and plant productivity, plant diversity, conservation of native grasslands and aesthetic.     

Soil humic substances affect transport properties of tonoplast vesicles isolated from oat roots

The effect of a low molecular size (<5 KDa) humic fraction, essentially fulvic acids, on microsomal and tonoplast ion-stimulated ATPase activity was studied. After 20 min of pre-incubation with microsomal vesicles from oat roots, humic substances at organic C concentration of up to 0.5 μg cm^-3 increased KCl-stimulated ATPase activity, while they inhibited enzyme activity at higher concentrations. Cl^--stimulated ATPase activity of tightly sealed tonoplast-enriched vesicles was similarly affected by <5 KDa humic substances. This behaviour was not observed when gramicidin D was added to the assay medium. Proton transport by vesicles incubated up to 5 min with <5 KDa humic molecules was affected in a concentration-dependent manner, strongly resembling that observed for ATP hydrolysis, whereas it was severely reduced when the assay conditions were close to those used for measuring ATP hydrolysis (20 min pre-incubation of vesicles with humic substances). The transmembrane electrical potential was negatively affected, irrespective of the concentration of humic molecules. Furthermore, a 15-min pre-incubation strongly reduced the formation of a potential gradient. The size and concentrations of humic substances employed make an interaction with the vacuolar membrane of root cells plausible. The results show that the main target of humic molecules is the electrical membrane potential and suggest a possible way of interference of these naturally occurring substances with the biochemical mechanisms involved in plant mineral nutrition.     

Reduction of humic substances by halorespiring, sulphate-reducing and methanogenic microorganisms

Physiologically distinct anaerobic microorganisms were explored for their ability to oxidize different substrates with humic acids or the humic analogue, anthraquinone-2,6-disulphonate (AQDS), as a terminal electron acceptor. Most of the microorganisms evaluated including, for example, the halorespiring bacterium, Desulfitobacterium PCE1, the sulphate-reducing bacterium, Desulfovibrio G11 and the methanogenic archaeon, Methanospirillum hungatei JF1, could oxidize hydrogen linked to the reduction of humic acids or AQDS. Desulfitobacterium dehalogenans and Desulfitobacterium PCE1 could also convert lactate to acetate linked to the reduction of humic substances. Humus served as a terminal electron acceptor supporting growth of Desulfitobacterium species, which may explain the recovery of these microorganisms from organic rich environments in which the presence of chlorinated pollutants or sulphite is not expected. The results suggest that the ubiquity of humus reduction found in many different environments may be as a result of the increasing number of anaerobic microorganisms, which are known to be able to reduce humic substances.     

Hydrolytic enzyme activities of extracted humic substances during the vermicomposting of a lignocellulosic olive waste

Humic substances and three hydrolytic enzymes (beta-glucosidase, phosphatase and urease) were extracted by neutral sodium pyrophosphate from an olive waste (dry olive cake), alone or mixed with municipal biosolids, during a nine month vermicomposting process. Easily degradable compounds decreased during the vermicomposting process because of microbial consumption. When municipal biosolids were added to dry olive cake, microbial activity increased and the amounts of compounds extracted by pyrophosphate were three times lower than olive cake alone. In both instances, beta-glucosidase, phosphatase and urease activities of the organic extracts either increased or remained the same after a nine month period of vermicomposting, thus suggesting that the humus enzyme complexes resisted microbial and earthworm attack. It is known that humus immobilised enzymes also remain active in soil environments, reactivating the nutrient cycles in soil. The use as amendments of vermicomposted olive cake, alone or when mixed with biosolids, could be a good alternative to reactivate the C, P and N-cycles in degraded soils for regeneration purposes.     

Effectiveness of municipal waste compost and its humic fraction in suppressing Pythium ultimum

The effect of addition of a municipal solid waste (MSW) compost and its water-soluble and humic fraction to suppress the effect of Pythium ultimum on pea plants was studied and compared with that of a chemical pesticide (metalaxyl). The biotic and abiotic characteristics of compost involved in the biocontrol effects of these materials were also evaluated. The addition into soil of whole composts and their humic fractions reduced the effect of the pathogen on pea plants, significantly reducing the number of root lesions and Pythium populations and avoiding reductions of plant growth. The greatest pathogen suppression was achieved with the chemical pesticide. However, it also caused a significant decrease in the number of nontarget bacteria and fungi and on beneficial soil microorganisms such as Trichoderma and Pseudomonas. Addition of organic amendments increased population size of nontarget and specific biocontrol microorganisms. The humic fraction showed similar results to compost. All this suggests that metalaxyl has a nonspecific effect, producing adverse effects on aspects of soil quality. This was avoided if the chemical pesticide was reduced and replaced by organic amendments such as an MSW compost or its humic fraction.     

Topsoil organic matter properties in contrasted hedgerow vegetation types

Background and aims

Hedges, semi-natural landscape components, have the ability to integrate both agronomic and environmental functions and to provide several ecosystem services. The aim of this study was to test whether hedgerow vegetation is a determinant of soil organic matter properties in ancient agricultural lands.

Methods

We complemented cluster analysis and ordination to determine the extent to which two types of hedges that were distinct in character-plant species also differed between each other in concentration and composition of two major constituents of soil organic matter, namely humic substances and dissolved organic matter.

Results

The two types of hedges were associated with significant differences in humic carbon content, hormone-like activity and molecular size of humic substances, which, in general, were more similar to those typical of forest than of agricultural soils. Moreover, we detected between-group differences in several phenolic acids.

Conclusions

Variation of the topsoil biochemical properties of hedges may be explained by variation in their vegetation characteristics, similar to other ecosystems. Spontaneous vegetation in hedges perform an important role in controlling the variability of surface soil properties that influence the evolution of soil organic matter and nutrient availability in agricultural lands.     

Microbial metabolism in surface sediments and its role in the immobilization of phosphorus in oligotrophic lake sediments

Rapid microbial metabolism and a large phosphorus uptake potential were observed in surface sediments of Lake George, New York. This sediment (termed the flocculent layer) also exhibited a phosphorus limited condition and a large reservoir of inorganic phosphorus associated with humic substances. These observations suggest that the empirically observed phosphorus retention in oligotrophic lake sediments may be promoted by a rapid cycling of phosphorus between microflora and its associated organic matter.     

Effect of solid particles on the growth and endurance to heat stress of garbage compost microorganisms

Summary A mixed population of microorganisms isolated from the municipal garbage compost was cultivated in a full nutrient liquid medium under aerobic conditions. In order to simulate the presence in compost of both noncolloidal and colloidal solid particles, glass beads, bentonite, or humic acid were added to the cultures. The growth of microorganisms and the CO₂ evolution rose with bentonite and humic acid, but the humic acid did not enhance the growth of the potential pathogenic bacteria. Solid particles appreciably influenced the endurance to heat stress of microorganisms supporting their adaptation to the changed temperature.     

Spectroscopic properties of dissolved humic substances - a reflection of land use history in a fen area

The elemental composition and spectroscopic properties of dissolved fulvic acids isolated from different sampling media (topsoil, ground and surface water) of a natural fen area (high portion of organic soils) were examined to reveal the effects of land use history. These effects need to be known if dissolved humic substances are to be a major factor in identifying the impact of present and future changes in land use. Dissolved fulvic acids (topsoil, groundwater) from highly degraded peatlands (due to a long-term agricultural use) exhibit lower C/N ratios, higher absorption in the UV spectra, and higher absorption at 1,620 cm^–1 in the FTIR spectra compared with fulvic acids from relatively intact peatlands. These properties illustrate that long-term agricultural use with high inputs results in increased aromatic structures and a further humification of dissolved fulvic acids due to very strong peat decomposition compared with relatively intact peatlands. Synchronous fluorescence spectra also indicate the higher level of aromatic structures within fulvic acids isolated from sites with long-term agricultural use (high peat decomposition) compared with a land use history resulting in a lower peat decomposition. The different sources of fulvic acids in surface water (precipitation, runoff, interflow, groundwater) are the main reason for these effects not being detected in fulvic acids isolated from surface water. Short-term changes in land use characterized by a transition from crop farming to an unimproved grassland were found not to affect the spectroscopic properties of dissolved fulvic acids. A humification index deduced from the synchronous fluorescence spectra is proposed. We have strong evidence that dissolved humic substances indicate changes in the environmental conditions (both anthropogenic and natural) of wetlands with a high proportion of organic soils.     

Modification of PAHs Biodegradation with Humic Compounds

The effect of extractable humic substances (EHS) on the bioremediation of phenanthrene in a slurry phase was investigated using adapted microorganisms with polycyclic aromatic hydrocarbons (PAHs). Two concentrations of EHS were used: 150 and 30 mg/kg soil. The phenanthrene concentration was 500 mg/kg soil. The results showed that the trend of biodegradation was increased after four weeks retardation. These tests showed that humic compounds could overcome the bond between the soil and phenanthrene in the presence of the bacterial consortium. The bacterial density in the medium with EHS was about six-fold greater in magnitude than in the medium without the humic compounds. The chemical relationship between phenanthrene and the humic substances in the form of a phenanthrene-humic-soil complex or phenanthrene-humic is loosely associated and reversible. Therefore, after the initial inhibition by humic substances, the bioavailability of phenanthrene increases.     

Litter decomposition: a Russian matriochka doll

Litter is decomposed in a sequential process. In a concerted action animals and microorganisms break down complex organic matter to mineral products. Higher animals fragment and partially solubilize plant material. Subsequently, microorganisms (protozoa, fungi and bacteria) further degrade the organic matter to end products that cannot be metabolized further under the prevailing environmental conditions. During the process of decomposition some parts of the organic substrate and the excess energy are used to form new biomass. Some free organic intermediates may interact chemically to form relatively recalcitrant organic matter, such as humic substances. The degree of mineralization depends strongly on the type of organic matter in the litter and the physical and chemical conditions of the environment.