Animal Scanner: Software for classifying humans,animals, and empty frames in camera trap images

Camera traps are a popular tool to sample animal populations because they are noninvasive, detect a variety of species, and can record many thousands of animal detections per deployment. Cameras are typically set to take bursts of multiple photographs for each detection and are deployed in arrays of dozens or hundreds of sites, often resulting in millions of photographs per study. The task of converting photographs to animal detection records from such large image collections is daunting, and made worse by situations that generate copious empty pictures from false triggers (e.g., camera malfunction or moving vegetation) or pictures of humans. We developed computer vision algorithms to detect and classify moving objects to aid the first step of camera trap image filtering—separating the animal detections from the empty frames and pictures of humans. Our new work couples foreground object segmentation through background subtraction with deep learning classification to provide a fast and accurate scheme for human–animal detection. We provide these programs as both Matlab GUI and command prompt developed with C++. The software reads folders of camera trap images and outputs images annotated with bounding boxes around moving objects and a text file summary of results. This software maintains high accuracy while reducing the execution time by 14 times. It takes about 6 seconds to process a sequence of ten frames (on a 2.6 GHZ CPU computer). For those cameras with excessive empty frames due to camera malfunction or blowing vegetation automatically removes 54% of the false‐triggers sequences without influencing the human/animal sequences. We achieve 99.58% on image‐level empty versus object classification of Serengeti dataset. We offer the first computer vision tool for processing camera trap images providing substantial time savings for processing large image datasets, thus improving our ability to monitor wildlife across large scales with camera traps.     

阿根廷淡水大米草沼泽中野生豚鼠的种群统计和微生境的利用

本文研究了秋冬季节淡水大米草(Spartina densiflora)沼泽中野生豚鼠(Cavia a perea)的丰度、繁殖和微生境利用,以及其对当地植被和棉鼠类(Sigmodontine)啮齿动物的影响。野生豚鼠喜好S.densiflora覆盖度高的生境。繁殖个体(成体)主要利用矮草为主的斑块,幼体则主要利用禾本科植物为主的斑块。结果说明,野生豚鼠微生境的利用受捕食风险和食物种类的影响。在淡水沼泽中,野生豚鼠的丰度、繁殖、体重和微生境利用没有季节性变化,它们对植物的取食和活动跑道的建造对植被结构和同域的啮齿类动物没有负面影响。通过对具有中度季节性变化的淡水生境中的豚鼠种群和具有高度季节变化的草地和路边中的豚鼠种群进行比较,表明野生豚鼠的种群动态以及豚鼠种群对植被和与其共生的啮齿动物群落的影响都受到冬季植被盖度的限制。     

The influence of wild boar <Emphasis Type="Italic">(Sus scrofa)</Emphasis> on microhabitat quality for the endangered butterfly <Emphasis Type="Italic">Pyrgus malvae</Emphasis> in the Netherlands

The decline of open habitats in Europe, such as semi-natural grasslands and heathlands, has caused a general decline in biodiversity, which has been well documented for butterflies. Current conservation practices often involve grazing by domestic livestock to maintain suitable butterfly habitats. The extent to which wild ungulates may play a similar role remains largely unknown. Through their rooting activity, wild boar could be effective to reduce grass encroachment and restore pioneer microhabitats that are vital to many grassland insects in temperate climates. Here, we assessed the microhabitat requirements of Pyrgus malvae, an endangered butterfly of heathland and grassland habitats in the Netherlands, with special attention for the influence of wild boar rooting. To date, oviposition site selection of this species has concentrated on calcareous grasslands, whereas we also include heathlands. Overall, larval occupancy was higher in warm, open and sparsely vegetated microhabitats, which supports earlier findings. In heathland, microhabitat occupancy was positively affected by bryophyte and litter cover. In heath-grassland mosaic, microhabitat occupancy was also influenced by bryophyte and litter cover, but in addition low grass cover increased occupancy by favouring host plants. In grassland, only low grass cover and host plant cover determined microhabitat quality. Across all habitats, occupied microhabitats were characterized by lower vegetation as well as higher average daytime temperatures than unoccupied microhabitats. We discovered that wild boar play an important role in reducing grass cover by shallow rooting in grass patches, thereby increasing host plant availability. Hence, wild boar may have an added value in maintaining and restoring P. malvae microhabitats in grassland habitats in addition to grazing by domestic livestock.     

Fine‐scale drivers of beetle diversity are affected by vegetation context and agricultural history

Environmental gradients have been shown to affect animal diversity, but knowledge of fine‐scale drivers of insect diversity is, in many cases, poorly developed. We investigated the drivers of beetle diversity and composition at different microhabitats, and how this may be mediated by past agricultural activities. The study was undertaken in temperate eucalypt grassy woodland near Canberra, south‐eastern Australia, with a 200‐year history of pastoral land use. We sampled beetles using pitfall traps at three microhabitats (open grassland, logs and under trees). We analysed the effects of soil properties, vegetation structure, and plant composition on beetle composition, and compared beetle responses among the microhabitats. We found that microhabitat was a strong determinant of the way beetle communities responded to their environment. Soil nutrients (C, N and P) were the strongest drivers of beetle species richness, abundance and composition at open and log microhabitat, however vegetation structure (tree basal area) was more important for beetle richness, abundance and biomass under trees. We also found significant differences in beetle composition among distinct ground‐layer plant communities at log and tree microhabitat. We show that prior agricultural land use, particularly fertilization, has altered soil and plant communities, and that these effects continue to flow through the system affecting beetle assemblages. These findings have implications for future management of microhabitat structures in temperate grassy woodlands with a history of agricultural use.     

Compounding effects of habitat fragmentation and predation on bird nests

Habitat fragmentation and invasive species are two of the greatest threats to species diversity worldwide. This is particularly relevant for oceanic islands with vulnerable endemics. Here, we examine how habitat fragmentation influences nest predation by Rattus spp. on cup‐nesting birds in Samoan forests. We determined models for predicting predation rates by Rattus on artificial nests at two scales: (i) the position of the bird's nest within the landscape (e.g. proximity to mixed crop plantations, distance to forest edge); and (ii) the microhabitat in the immediate vicinity of the nest (e.g. nest height, ground cover, slope). Nest cameras showed only one mammal predator, the black rat (Rattus rattus), predating artificial nests. The optimal model predicting nest predation rates by black rats included a landscape variable, proximity to plantations and a local nest site variable, the percentage of low (<15 cm) ground cover surrounding the nest tree. Predation rates were 22 ± 13% higher for nests in forest edges near mixed crop plantations than in edges without plantations. In contrast, predation rates did not vary significantly between edge habitat where the matrix did not contain plantations, and interior forest sites (>1 km from the edge). As ground cover reduced, nest predation rates increased. Waxtags containing either coconut or peanut butter were used as a second method for assessing nest predation. The rates at which these were chewed followed patterns similar to the predation of the artificial nests. Rural development in Samoa will increase the proportion of forest edge near plantations. Our results suggest that this will increase the proportion of forest birds that experience nest predation from black rats. Further research is required to determine if rat control is needed to maintain even interior forest sites populations of predator‐sensitive bird species on South Pacific islands.     

Microhabitat Preference of Egernia napoleonis in Undisturbed Jarrah Forest,and Availability and Introduction of Microhabitats to Encourage Colonization of Restored Forest

An animal's microhabitat requirements can impact its ability to colonize restored areas, particularly species requiring slow developing microhabitats, such as logs and woody debris piles. Introduction of these microhabitats may be required to facilitate colonization by some species. Restored bauxite mine‐pits in the Jarrah (Eucalyptus marginata) forest of south‐western Australia contain introduced log piles at densities of 1 ha^?1. However, these have not facilitated colonization by Napoleon's skink (Egernia napoleonis), which rely on logs for habitat and are largely absent from restored sites. We radio‐tracked 12 skinks in unmined forest to determine their microhabitat preferences and examined differences in vegetation structure, and microhabitat and food availability, between restored and unmined forests to identify reasons for their absence. Restored and unmined forests differed in canopy, mid‐ and understory cover and ground substrates, which were all potential barriers to colonization. Food availability was similar between restored and unmined forest, thus not a barrier to colonization. Skinks primarily utilized long logs, large woody debris piles, and large trees; microhabitats that were scarce or absent in restored sites and, therefore, potential barriers to colonization. Using this information, we introduced small woody debris piles into restored sites in close proximity to unmined areas containing skinks to facilitate skink colonization. This showed early signs of success and suggested that the lack of logs and woody debris were barriers to colonization. However, further monitoring is required to accurately determine the long‐term value of woody debris piles in facilitating skink colonization.     

Microhabitat characteristics of Akodon montensis,a reservoir for hantavirus,and hantaviral seroprevalence in an Atlantic forest site in eastern Paraguay

Hantaviruses may cause serious disease when transmitted to humans by their rodent hosts. Since their emergence in the Americas in 1993, there have been extensive efforts to understand the role of environmental factors on the presence of these viruses in their host rodent populations. HPS outbreaks have been linked to precipitation, but climatic factors alone have not been sufficient to predict the spatial‐temporal dynamics of the environment‐reservoir‐virus system. Using a series of mark‐recapture sampling sites located at the Mbaracayú Biosphere Reserve, an Atlantic Forest site in eastern Paraguay, we investigated the hypothesis that microhabitat might also influence the prevalence of Jaborá hantavirus within populations of its reservoir species, Akodon montensis. Seven trapping sessions were conducted during 2005‐2006 at four sites chosen to capture variable microhabitat conditions within the study site. Analysis of microhabitat preferences showed that A. montensis preferred areas with little forest overstory and denser vegetation cover on and near the ground. Moreover, there was a significant difference in the microhabitat occupied by antibody‐positive vs antibody‐negative rodents, indicating that microhabitats with greater overstory cover may promote transmission and maintenance of hantavirus in A. montensis.     

Microhabitat preference constrains invasive spread of non-native natal grass (<Emphasis Type="Italic">Melinis repens</Emphasis>)

Preventing the establishment of a non-native species is critical for ensuring the species does not become invasive, yet most non-native species will have little impact on their environment. Despite this, little is known about what influences whether a species will remain relatively benign, or whether it will cause economic or ecological harm. Understanding a plant’s microhabitat provides insight into the necessary conditions for establishment and the current distribution limitations of a population. We investigated microhabitat preference of the non-native natal grass (Melinis repens (Willd.) Zizka) in Florida scrub using microhabitat sampling to measure vegetation composition. We examined the extent to which microhabitats were associated with natal grass presence and biomass in invaded disturbed scrub and roadside plots using backwards stepwise logistic regression and general linear models to identify significant microhabitat variables. We further compared these plots with those in undisturbed, uninvaded scrub to characterize vegetation across habitat types, and used our model to predict the probability of natal grass invasion in undisturbed scrub. Natal grass preferred microhabitats with high litter volume and distance to shrubs and intermediate cactus, graminoid, and vine cover. Roadside natal grass achieved higher biomass and was less microhabitat limited than disturbed scrub natal grass. We determined that undisturbed scrub plots represent distinct microhabitats that natal grass is unlikely to invade. Microhabitat sampling provides land-managers a non-intrusive technique to assess potential habitat suitability based non-native plant preferences before a costly invasion occurs.     

Strong observer effect on tree microhabitats inventories: A case study in a French lowland forest

Validating biodiversity indicators requires an analysis of their applicability, their range of validity and their degree of correlation with the biodiversity they are supposed to represent. In this process, assessing the magnitude of observer effect is an essential step, especially if non-specialist observers are involved. Tree microhabitats – woodpecker cavities, cracks and bark characteristics – are reputed to be easily detected by non-specialists as microhabitat observation does not require prior forestry or ecology knowledge. We therefore quantified the probabilities of true and false positive detections made by observers during inventories.Within two 0.5 ha plots in a forest reserve that has not been harvested for at least 150 years, 14 observers with various backgrounds visually inventoried microhabitats on 106 oak (Quercus petraea and Quercus robur) and beech (Fagus sylvatica) trees. We used parametric and Bayesian statistics to compare these observers’ recorded observations with results from an independent census.The mean number of microhabitats per tree varied widely among observers – from 1.4 to over 3. Only five observers reported a mean number of microhabitats per tree that was statistically equivalent to the reference census. The probability of true detection also varied among observers for each microhabitat (from to 0 to 1) as did the probability of false positive detection (from 0 to 0.7). These results show that microhabitat inventories are particularly prone to observer effects.Such strong observer effects weaken the usefulness of microhabitats as biodiversity indicators. If microhabitat inventories are to be developed, we recommend controlling for observer effects by (i) defining standard operating procedures and multiplying the number of observer training sessions and of consensual standardization censuses; (ii) using pairs of observers to record microhabitats whenever possible (though the efficiency of this method remains to be tested); (iii) planning fieldwork so that the factors of interest are not confused with observer effects; and (iv) integrating observer profiles into the statistical models used to analyze the data.     

Distribution patterns of four Orthoptera species in relation to microhabitat heterogeneity in an ecotonal area

Microhabitat heterogeneity is considered to be one of the main factors affecting the structure and diversity of natural communities. This study evaluated: (i) whether it is possible to associate the distribution of four orthopteran species with small-scale spatial microhabitat heterogeneity based on floristic composition; and (ii) whether interspecific differences exist in microhabitat was among the different orthopteran species over a gradient of vegetation succession induced by abandonment of meadows. Orthoptera and plant species were sampled on 72 plots across an ecotonal area on Monte Bondone in the Southern Italian Alps. Microhabitats were identified based on grassland and undergrowth vegetation composition and by classifying sample plots using cluster analysis. Eight microhabitats were identified, each corresponding to a separate successional stage, and microhabitat use by each species was assessed. The distribution of orthopteran species revealed a different use of microhabitats. Species also had differing patterns of distribution, and a shift in distribution occurred following a change in microhabitat structure caused by mowing. The importance of the maintenance of a mosaic of microhabitats, with differently managed adjacent areas is discussed.     

干旱河谷微生境变化对乡土植物幼苗定植的影响

干旱区植被斑块状分布格局引起的微生境差异对植被更新影响显著。气候变化和人类活动扰动下, 干旱区生态系统微生境多样化, 急需揭示乡土植物定植对不同微生境斑块变化的响应及其种间差异性, 并采用微生境调控技术促进退化生态系统植被恢复。该研究选择岷江干旱河谷区自然分布的灌木、半灌木和裸地微生境斑块, 采用移栽鞍叶羊蹄甲(Bauhinia brachycarpa)幼苗的试验方法, 揭示微生境变化对幼苗定植的影响; 进一步以极端退化的道路边坡为案例, 通过6种乡土植物种子直播试验探讨微生境调控技术及其对乡土植物幼苗定植的促进作用。结果显示, 在自然生态系统中, 裸地斑块上幼苗保存率和生物量显著大于植被斑块, 表明裸地微生境有利于幼苗定植; 养分添加仅对裸地斑块中幼苗生物量积累有促进作用。在裸地斑块中, 叶片生物量所占的比例和比叶面积较小, 相反根和茎生物量所占的比例较大。道路边坡上植被恢复试验结果显示, 6种乡土植物均能较好地适应土石混杂的边坡生境, 多数物种出苗率大于60%; 灌木幼苗保存率大于75%, 并且形成镶嵌式乡土灌草群落结构。地表覆盖和养分添加提高了边坡上种子出苗率和幼苗保存率, 促进了幼苗定植和结构稳定。该研究提供了有效促进工程边坡上乡土植物定植的方法, 可为干旱、半干旱生态系统退化荒坡和工程破坏地乡土植被恢复提供理论依据和技术指导。     

Microhabitat diversity and associated macroinvertebrates in aquatic banks of a large European river

Microhabitats and associated macroinvertebrate communities in aquatic banks of the Upper Rhône River (upstream from Lyon, France) were studied during the autumn of 1985, under low flow conditions. Based on a regular sampling design (one site every 500 m) along 70 km of riverbank, 18 microhabitat types were identified. Mineral microhabitats (from boulders to clay) accounted for 70%; the remainder corresponded chiefly to the microhabitats of aerial or semi-aerial submerged vegetation (27%) and aquatic vegetation (less than 2%). Using various methods, 239 faunistic samples of microhabitat types resulted in the collection of nearly 64 000 organisms representing 133 taxa. A correspondence analysis showed that most of the 18 microhabitat types were on average well characterized by a specific macrofauna. Microhabitats of aquatic vegetation (hydrophytes and algae) contained the richest fauna in terms of both mean specific richness (15.0 and 13.2 per sample, respectively) and mean density (73 125 and 59 475 ind. m^?2, respectively). By contrast, mineral microhabitats were faunistically poorer (mean specific richness per sample <6.0, except cobbles; and mean density ≤10405 ind. m^?2). The fewest species and lowest density occurred in clay, silt and sand. Estimated mean density of macroinvertebrates in the aquatic banks of the Upper Rhône River was approximately 16 000 ind. m^?2. This was four times higher than in deeper sections of the channel at the same season. The aquatic banks of this large European river, with its great diversity of microhabitats, must be taken into account in all macroinvertebrate studies of fluvial systems.     

Identification of key microhabitats for fish assemblages in tropical Brazilian savanna streams

The habitat use by stream fish can provide an understanding of this important component of species niches, and the changes in the availability of certain structures of instream habitats have a strong influence on the occurrence and abundance of fish species. In this study, we identified the interaction networks between fish and microhabitats in 19 streams of three watersheds from the Brazilian savanna, known as the “Cerrado”. We also investigated whether the connectance between fish species and microhabitats depends on either the species abundance or availability of microhabitats and verified whether the use of stream microhabitats vary among watersheds. The data for the fish were obtained using standardized fish collections and underwater (snorkeling) observations to record the association of fish species with 11 stream microhabitats. We used the incidence data to calculate the connectance of species with different microhabitats, a Spearman correlation analysis to test the dependence of the connectance to the species abundance and microhabitat availability, and an Analysis of Similarity to test whether the use of stream microhabitats by fish can vary among watersheds. In all of the watersheds, the tetras of the family Characidae used the largest number of microhabitats. The most‐used microhabitats by the fish watersheds were the lateral surface, column surface, and unconsolidated substrate, which were differentially used by the fish in each watershed, indicating the variable importance of microhabitats. Despite this observation, the fish occurred more frequently in the lateral microhabitats. When the data for all of the streams were combined, the species connectance was correlated with the species abundance. We also discuss the consequences of the elimination of certain bottom structures in the context of siltation, which is the main issue in the studied region. The results of our study allowed the detection of key microhabitat structures and can be used for the aquatic ecosystems restoration. (© 2012 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

An ‘ecological trap’ for yellow warbler nest microhabitat selection

Contrary to assumptions of habitat selection theory, field studies frequently detect ‘ecological traps’, where animals prefer habitats conferring lower fitness than available alternatives. Evidence for traps includes cases where birds prefer breeding habitats associated with relatively high nest predation rates despite the importance of nest survival to avian fitness. Because birds select breeding habitat at multiple spatial scales, the processes underlying traps for birds are likely scale‐dependent. We studied a potential ecological trap for a population of yellow warblers Dendroica petechia while paying specific attention to spatial scale. We quantified nest microhabitat preference by comparing nest‐ versus random‐site microhabitat structure and related preferred microhabitat features with nest survival. Over a nine‐year study period and three study sites, we found a consistently negative relationship between preferred microhabitat patches and nest survival rates. Data from experimental nests described a similar relationship, corroborating the apparent positive relationship between preferred microhabitat and nest predation. As do other songbirds, yellow warblers select breeding habitat in at least two steps at two spatial scales; (1) they select territories at a coarser spatial scale and (2) nest microhabitats at a finer scale from within individual territories. By comparing nest versus random sites within territories, we showed that maladaptive nest microhabitat preferences arose during within‐territory nest site selection (step 2). Furthermore, nest predation rates varied at a fine enough scale to provide individual yellow warblers with lower‐predation alternatives to preferred microhabitats. Given these results, tradeoffs between nest survival and other fitness components are unlikely since fitness components other than nest survival are probably more relevant to territory‐scale habitat selection. Instead, exchanges of individuals among populations facing different predation regimes, the recent proliferation of the parasitic brown‐headed cowbird Molothrus ater, and/or anthropogenic changes to riparian vegetation structure are more likely explanations.     

Effects of temperature and elevation on habitat use by a rare mountain butterfly: implications for species responses to climate change

Abstract 1. The present study used the mountain specialist butterfly Parnassius apollo as a model system to investigate how climate change may alter habitat requirements for species at their warm range margins. 2. Larval habitat use was recorded in six P. apollo populations over a 700 m elevation gradient in the Sierra de Guadarrama (central Spain). Larvae used four potential host species (Sedum spp.) growing in open areas amongst shrubs. 3. Parnassius apollo host‐plant and habitat use changed as elevation increased: the primary host shifted from Sedum amplexicaule to Sedum brevifolium, and larvae selected more open microhabitats (increased bare ground and dead vegetation, reduced vegetation height and shrub cover), suggesting that hotter microhabitats are used in cooler environments. 4. Larval microhabitat selection was significantly related to ambient temperature. At temperatures lower than 27 °C, larvae occupied open microhabitats that were warmer than ambient temperature, versus more shaded microhabitats that were cooler than ambient conditions when temperature was higher than 27 °C. 5. Elevational changes in phenology influenced the temperatures experienced by larvae, and could affect local host‐plant favourability. 6. Habitat heterogeneity appears to play an important role in P. apollo larval thermoregulation, and may become increasingly important in buffering populations of this and other insect species against climatic variation.     

Testing appropriate habitat outside of historic range: The case of Amorpha herbacea var. crenulata (Fabaceae)

In the next century, safeguarding plant species against extinction from complete land conversion may require introducing species to novel locations. Although regulatory agencies caution against translocation outside of known historic ranges, when most wild populations and their habitats have been severely altered few viable options may be available for conserving rare plants. We introduced 345 endangered Amorpha herbacea var. crenulata along a pine rockland/transverse glade gradient with similar attributes to historically known occurrences for south Florida, USA, and monitored their survival and growth for five years. The experimental phase addressed: (1) Is the recipient site suitable for colonisation of this species despite hydrological manipulation in the region? (2) Can translocated plants grow equally well in four microhabitats along a gradient within the recipient site? We characterised soil water content, soil nutrient, and vegetation cover to assess the microhabitats at the recipient site. From 2006 to 2008 plants survived in all four microhabitats, but had highest survival in pineland. Translocated plants grew best in microhabitats with less grass cover and higher P content – the pineland and the restoration glade. Through 2008 we observed consistently higher soil water content with less total vegetation cover in pineland and significantly higher P content in the restoration glade.Using 2006–2008 data, we implemented the adaptive management phase, moving 20 plants from the lowest survival microhabitat to the highest survival microhabitat. This tactic improved the survival of plants by 2011, though growth rates of moved plants did not improve. Short-distance translocation, assessing environmental attributes related to plant survival and growth, quantifying similarity of soil, temperature, precipitation, and community as in this study are recommended to evaluate prospective introduction sites for translocations within or outside of range.     

Fitness of two sibling species of Asobara (Braconidae:Alysiinae), larval parasitoids of Drosophilidae in different microhabitats

Abstract. 1. Two sibling species of larval endoparasitoids of Drosophilidae: Asobara tabida (Nees) and A.rufescens (Foerster) occur in the same macrohabitat, but inhabit different microhabitats. Each species is most attracted by odours of its own microhabitat.
2. In order to assess the adaptive value of the microhabitat preference we studied the survival of both parasitoids in the major host species that occur in these microhabitats.
3. Survival in the major host in the preferred microhabitat was shown to be 40% higher for A.tabida and 30% higher for A.rufescens when compared to survival in the major host in the non-preferred microhabitat.
4. Measurements of developmental rates, specific mortalities and dry weights of the parasitoids suggest that the differential survival is due to differences in synchronization with the hosts.
5. The possible evolutionary consequences of some biological characteristics in Asobara are discussed. Microhabitat selection, differential survival, development and mating behaviour are attributes likely to have played a role in the reduction of gene flow between populations of the ancestral species, either in primary or in secondary sympatry.     

The use of infrared‐triggered cameras for surveying phasianids in Sichuan Province,China

We report on the use of infrared‐triggered cameras as an effective tool to survey phasianid populations in Wanglang and Wolong Nature Reserves, China. Surveys at 183 camera‐trapping sites recorded 30 bird species, including nine phasianids (one grouse and eight pheasant species). Blood Pheasant Ithaginis cruentus and Temminck’s Tragopan Tragopan temminckii were the phasianids most often detected at both reserves and were found within the mid‐elevation range (2400–3600 m asl). The occupancy rate and detection probability of both species were examined using an occupancy model relative to eight sampling covariates and three detection covariates. The model estimates of occupancy for Blood Pheasant (0.30) and Temminck’s Tragopan (0.14) are close to the naïve estimates based on camera detections (0.27 and 0.13, respectively). The estimated detection probability during a 5‐day period was 0.36 for Blood Pheasant and 0.30 for Temminck’s Tragopan. The daily activity patterns for these two species were assessed from the time/date stamps on the photographs and sex ratios calculated for Blood Pheasant (152M : 72F) and Temminck’s Tragopan (48M : 21F). Infrared cameras are valuable for surveying these reclusive species and our protocol is applicable to research or monitoring of phasianids.     

Toward reliable population density estimates of partially marked populations using spatially explicit mark–resight methods

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An improved method of microhabitat assessment relevant to predation risk

Animals may select the microhabitats they use in response to a real or perceived risk of attack by visually hunting predators. However, to demonstrate this requires measuring visual cover at the microhabitat level, which can be labor-intensive and may require specialized equipment. Simpler methods lack repeatability, particularly when multiple observers are involved. We devised, and describe here, the quadrant cover method (QCM), which provides rapid, objective assessment of the degree of concealment that microhabitats provide from visual predators. Our method gives results that correlate strongly with those obtained using a conventional sight board, but requires less than 25% of the time. The method is highly repeatable, with negligible observer bias. The QCM is ideal in microhabitat studies in which the variable of interest is visual exposure to other animals such as predators.