Probing the structural determinants of yellow fluorescence of a protein from Phialidium sp

Fluorescent proteins homologous to green fluorescent protein (avGFP) display pronounced spectral variability due to different chromophore structures and variable chromophore interactions with the surrounding amino acids. To gain insight into the structural basis for yellow emission, the 3D structure of phiYFP (λ_em = 537 nm), a protein from the sea medusa Phialidium sp., was built by a combined homology modeling – mass spectrometry approach. Mass spectrometry of the isolated chromophore-bearing peptide reveals that the chromophore of phiYFP is chemically identical to that of avGFP (λ_em = 508 nm). The experimentally acquired chromophore structure was combined with the homology-based model of phiYFP, and the proposed 3D structure was used as a starting point for identification of the structural features responsible for yellow fluorescence. Mutagenesis of residues in the local chromophore environment of phiYFP suggests that multiple factors cooperate to establish the longest-wavelength emission maximum among fluorescent proteins with an unmodified GFP-like chromophore.     

Key amino acid residues responsible for the color of green and yellow fluorescent proteins from the coral polyp Zoanthus

Site-directed mutagenesis was used to study the structural basis of color diversity of fluorescent proteins by the example of two closely related proteins from one organism (coral polyp Zoanthus sp.), one of which produces green and the other, yellow fluorescence. As a result, the following conversions of emission colors were performed: from yellow to green, from yellow to a dual color (yellow and green), and from green to yellow. The saltatory character of the spectral transitions and the manifestation of the dual-color fluorescence suggest that chemically different fluorophores are responsible for the green and yellow fluorescence. The simultaneous presence of three residues, Gly63, Lys65, and Asp68, is necessary for the efficient formation of the yellow rather than green fluorophore. The English version of the paper: Russian Journal of Bioorganic Chemistry, 2002, vol. 28, no. 4; see also http://www.maik.ru.     

Role of host fruit color in the behavior of the walnut fly Rhagoletis juglandis

Observations and sticky-trap tests were used to assess the effect of fruit color on the behavior of adult male and female Rhagoletis juglandis Cresson (Diptera: Tephritidae), a tephritid that infests husks of Arizona walnut in southeastern Arizona. In the first experiment, during which flies were observed foraging among walnut models suspended from small walnut trees, models were painted green to appear ripe and uninfested or yellow with brown patches to appear ripe and infested. Flies used for this first experiment were also of two types: prior to observations, one group of flies had access to real walnuts for 1.5 days (prior experience) while the other group of flies was held without real walnut fruits (no prior experience). Regardless of prior experience with real walnut fruits, female flies landed on green models more than yellow/brown models. Experienced males also were more likely to land on green models than on yellow/brown models. More interactions also occurred on green models, because there were more landings.In the field behavioral assay, flies from a natural population given a choice of green, yellow, and yellow/brown models landed most often on green models, and all interactions and oviposition attempts occurred on green models. Flies also distinguished models by color in field sticky trap assays.These results suggest that female response to ripeness cues is innate, while males develop a preference for green based on their encounter rate with females.     

A new species ofThottea (Aristolochiaceae) from India

Thottea ponmudiana sp. nova from Kerala (India) can readily be distinguished from its closest allyTh. siliquosa and all the other known species of the genus by its yellow flowers with purple eyes, deeply lobed perianth with strongly reflexed margins, uniseriate stamens united in three bundles and strongly 4-angled, green, glabrescent fruits.     

Photoreactivation of UV-irradiated blue-green algae and algal virus LPP-1

Ultraviolet (UV) sensitivity and photoreactivation of blue-green algae Cylindrospermum sp., Plectonema boryanum, spores of Fischerella muscicola and algal virus (cyanophage) LPP-1 were studied. The survival value after UV irradiation of filaments of Cylindrospermum sp. and Virus LPP-1 showed exponential trend and these were comparatively sensitive towards UV than F. muscicola and P. boryanum. Photoreactivation of UV-induced damage occurred in black, blue, green, yellow, red and white light in Cylindrospermum sp., however only black, blue and white light were capable of photorepair of UV-induced damage in P. boryanum, spores of F. muscicola and virus LPP-1 in infected host alga. Pre-exposure to yellow and black light did not show photoprotection. The non-heterocystous and nitrogen fixation-less mutants of Cylindrospermum sp. were not induced by UV and their spontaneous mutation frequency was not affected after photoreactivation. The short trichome mutants of P.boryanum were more resistant towards UV.The occurrence of photoreactivation of UV-induced killing in wide range of light in Cylindrospermum sp. is the first report in organisms.     

Association of red coloration with senescence of sugar maple leaves in autumn

We evaluated the association of red coloration with senescence in sugar maple (Acer saccharum Marsh.) leaves by assessing differences in leaf retention strength and the progression of the abscission layer through the vascular bundle of green, yellow, and red leaves of 14 mature open-grown trees in October 2002. Computer image analysis confirmed visual categorization of leaves as predominantly green, yellow or red, and chemical quantification of leaf pigment concentrations verified that leaf color reflected underlying differences in leaf biochemistry. Significantly lower chlorophyll concentrations within red and yellow leaves indicated that senescence was more advanced in leaves from these color categories relative to green leaves. Among leaf types, only red leaves contained high concentrations of anthocyanins. There were significant differences in leaf retention capacity among color categories, with the petioles of green leaves being the most firmly attached to twigs, followed by red and then yellow leaves. Microscopic analysis indicated that yellow leaves had the most advanced extension of the abscission layer through the vasculature, with green and red leaves having significantly less abscission layer progression than yellow. A more limited progression of the abscission layer through vascular bundles may be evidence of delayed leaf senescence that could extend resorption of mobile leaf constituents. Together, results from this study suggest an association between leaf anthocyanin content and functional delays in senescence.     

Phylogeny of the PscB reaction center protein from green sulfur bacteria

The reaction center (RC) of green sulfur bacteria has iron—sulfur clusters as terminal acceptors and is related to the Type I RC found in Heliobacter sp. and in Photosystem I (PS I) of green plants and cyanobacteria. Degenerate primers were used to retrieve the genes coding for one of the RC proteins, PscB, from 11 strains of green sulfur bacteria. PCR using the same primers gave no product with a second group of strains and the protein from these strains did not crossreact with antibodies raised against purified PscB from the first group, suggesting the presence of a high degree of variability. The sequences shared a high degree of similarity in the region coding for the binding motif for the 4Fe–4S centers. However, the N-terminal portion of the deduced protein sequences was highly variable and contained a highly positively charged, low-complexity region with repeated tetrapeptides with two alanines flanked by proline or lysine. The PscB sequences obtained fell into two major groups, and the results suggested a lack of correlation between the pigmentation of the chlorosome antenna system and the reaction center protein. There is also a lack of correlation between the grouping of the pscB sequences and the phylogeny deduced from 16S rRNA.This revised version was published online in October 2005 with corrections to the Cover Date.     

皱皮木瓜果实发育后期品质变化及其成熟阶段的划分初探

以湖北长阳产皱皮木瓜为材料,测定果实发育后期果实鲜质量、果长、果径、果色、果实硬度以及果肉干物质量、可溶性糖含量、总酸含量和总黄酮含量等品质指标的动态变化,划分不同成熟阶段,为判断果实适宜采收期、实现优质生产提供理论参考。结果表明:(1)皱皮木瓜果实发育后期果实鲜质量、果长、果径、果肉干物质量和可溶性糖含量均呈现上升趋势;果色由绿色、黄绿色渐变为淡黄色到黄色;果实硬度、果肉总酸和总黄酮含量呈先上升后下降趋势。(2)各品质指标快速变化的时间区域存在差异,果实鲜质量在花后105~150d增加较快,果色在150d后逐渐变黄,果实硬度在花后135~165d快速下降,果肉总酸、总黄酮含量则在花后105~120d快速增加至峰值。(3)根据主成分分析结果和各品质指标的变化特点,可初步将皱皮木瓜果实发育后期划分为未成熟(花后105d之前)、早期成熟(花后120~150d)和成熟(花后165~180d)3个阶段。研究表明,随着果实成熟度的提高,皱皮木瓜果实鲜质量、果色、果肉干物质量、可溶性糖含量等指标不断升高,果实硬度逐渐下降,其食用加工品质不断提升,而在早期成熟阶段(花后120~150d)果实的药用品质则相对较高。     

Associative Learning of Color by Males of the Parasitoid Wasp Nasonia vitripennis (Hymenoptera: Pteromalidae)

Males of the parasitoid wasp Nasonia vitripennis showed no innate preference for blue versus yellow or for green versus brown. They learned to associate color with mates, but their ability to do so depended on the color used and the strength of the reward. Specifically, males learned to associate brown or green with a reward of many virgin females. With fewer females, fewer training periods, or mated females as the reward, males still learned a preference for green but not for brown. Males did not learn to associate color with rewards of honey or water. Previous studies of color preference and associative learning in parasitoid wasps have focused almost entirely on females. This is the first demonstration of associative learning in response to visual cues by male parasitoid wasps.     

Monitoring ofgfp-taggedMoraxella sp. under starvation condition

A PNP(p-nitrophenol)-degradingMoraxella sp. was genetically marked bygfp gene for monitoring. Stable chromosomal integration of the introducedgfp gene was confirmed by examining the transformants under epifluorescent microscope. The survival ofgfp-taggedMoraxella sp. cells during long-term storage under starvation condition was examined by viable cell counting and direct fluorescence microscopic counting. The number of green fluorescent cells obtained by direct microscopic counting was approximately 10 times greater than viable cell counts by plating. The number of cells from both counting methods was higher at lower temperature (4°C), although the drop of cell number after 8 weeks of starvation was comparable (approximately 100 fold drop from initial counts). Results obtained by two different methods correlated well with each other indicating that thegfp markedMoraxella sp. can be directly monitored following environmental release using epifluorescence microscopy.     

Map-based cloning and characterization of a gene controlling hairiness and seed coat color traits in <Emphasis Type="Italic">Brassica rapa</Emphasis>

A glabrous, yellow-seeded doubled haploid (DH) line and a hairy, black-seeded DH line in Chinese cabbage (B. rapa) were used as parents to develop a DH line population that segregated for both hairiness and seed coat color traits. The data showed that both traits completely co-segregated each other, suggesting that one Mendelian locus controlled both hairiness and seed coat color in this population. A fine genetic map was constructed and a SNP marker that was located inside a Brassica ortholog of TRANSPARENT TESTA GLABRA 1 (TTG1) in Arabidopsis showed complete linkage to both the hairiness and seed coat color gene, suggesting that the Brassica TTG1 ortholog shared the same gene function as its Arabidopsis counterpart. Further sequence analysis of the alleles from hairless, yellow-seeded and hairy, black-seeded DH lines in B. rapa showed that a 94-base deletion was found in the hairless, yellow-seeded DH lines. A nonfunctional truncated protein in the hairless, yellow-seeded DH lines in B. rapa was suggested by the coding sequence of the TTG1 ortholog. Both of the TTG1 homologs from the black and yellow seeded B. rapa lines were used to transform an Arabidopsis ttg1 mutant and the results showed that the TTG1 homolog from the black seeded B. rapa recovered the Arabidopsis ttg1 mutant, while the yellow seeded homolog did not, suggesting that the deletion in the Brassica TTG1 homolog had led to the yellow seeded natural mutant. This was the first identified gene in Brassica species that simultaneously controlled both hairiness and seed coat color traits.     

Sexual dimorphism in <Emphasis Type="Italic">Sebastes owstoni</Emphasis> (Scorpaenidae) from the Sea of Japan

Morphological and genetic differences between red and yellow morphotypes of Sebastes owstoni were investigated, utilizing 277 males [84.0–194.3 mm in standard length (SL)] and 542 females (92.3–251.5 mm SL) from the Sea of Japan. All males smaller than 120 mm SL were characterized by red body color. The frequency of specimens with yellow body color thereafter increased gradually with SL, all specimens larger than 170 mm SL being yellow. The specimens with yellow body color were observed throughout the year. All females smaller than 170 mm SL were characterized by red body color, the frequency of specimens with yellow body color tending to slightly increase with SL. However, most females had red body color, except for 16 specimens (177.7–241.5 mm SL) that were yellow, growth-related color change from red to yellow being uncommon. Morphological analysis of 49 males (107.6–193.3 mm SL) and 68 females (108.7–241.5 mm SL) showed the head length, orbit diameter, lower jaw length, and predorsal length to be relatively greater, but the distance between the pelvic and anal fins less, in males. A discriminant analysis using Mahalanobis distances resulted in 100% correct assignment of specimens to sex, regardless of SL and body color. In addition, no genetic differences were apparent between red and yellow individuals in mitochondrial DNA sequence analyses from the threonine tRNA to the first half of the control region (498 bp). Accordingly, the differences in body color, maximum size, and the five morphometric characters listed above were considered to represent sexual dimorphism. That evidenced by body color was considered to appear after that shown by morphometric characters, some exceptions in the former occurring in females. This is the first report of permanent sexual dimorphism in body color in Sebastes.     

Field studies on colour preferences of Ctenarytaina thysanura in Tasmanian boronia farms

Field tests on attraction of Ctenarytaina thysanura (Hemiptera: Psyllidae) adults to different coloured 30×30 cm sticky traps revealed a preference for yellow. Among the enamel colours tested, more psyllids were captured on yellow traps followed by green, then blue and least on red, cyan and magenta. Dilution of yellow enamel with 50% white (1Y: 1W) and 75% white (1Y: 3W) to produce yellow-white hues resulted in a significant decrease in psyllid capture indicating that the psyllids response to yellow was one of positive attraction and could suggest true colour discrimination. Reflectance spectra of painted surfaces of the enamel colours and also yellow to white hues indicated that psyllid capture rates were directly related to the proportion of light reflected in the 500–560 nm region. The biological basis of the observed C. thysanura response may be that yellow is the most intensely reflective colour in the general part of the spectrum for leaves which reflect most light in the 500–600 nm (peak 550 nm) range.     

Analysis of early growth of guppy strains,Poecilia reticulata,with different color patterns

Summary The guppy, Poecilia reticulata, is economically the most important species of freshwater ornamental fish cultured in Singapore. About 30 strains with different color patterns and fin shapes are reared in guppy farms practising monoculture in Singapore. To compare the growth rates of domesticated strains with different color patterns, newborn fry of 11 strains were obtained on the same day from a single farm in Singapore and were reared experimentally in the laboratory for about 100 days. Each strain was distributed randomly into 4 tanks with 30 fish/tank. Weekly weighings of 10 fish/tank were made from 17 to 100 days of age. Three strains were homozygous for the autosomal recessive blond gene which gives rise to a pale yellow background pigmentation (bb). These blond strains had significantly smaller body weights than corresponding ones with the same color pattern but with the wild-type grey-brown background coloration due to the dominant allele (BB). The strains with the red tail pattern due to a dominant X-linked gene (Rdt) had more rapid growth than those with other tail color patterns including the blue, black, green snakeskin and variegated. However, no significant differences were detected among the other color pattern strains. Thus among the strains studied, the blond strains were associated with slower growth while those with the red tail color were associated with faster growth.     

灰葡萄孢菌过氧化物酶体及细胞核的荧光蛋白标记

【目的】对灰葡萄孢菌(Botrytis cinerea)的细胞核和过氧化物酶体进行荧光蛋白标记,为研究其生长发育和侵染过程中细胞结构和细胞器动态提供基础。【方法】以绿色荧光蛋白(GFP)和红色荧光蛋白(DsRED、mCherry)为报告基因,利用根癌农杆菌介导转化(Agrobacterium tumefaciens mediated transformation,AtMT)将3种荧光蛋白标记载体分别导入灰葡萄孢菌标准菌株B05.10;通过PCR检测及荧光观察筛选和验证转化子,并进行单孢纯化;利用共聚焦显微镜记录细胞器荧光定位情况。【结果】获得了过氧化物酶体或细胞核稳定表达红、绿色荧光的重组单孢菌株,PCR验证表明标记基因成功整合入转化子基因组。在标记细胞核的菌株中,菌丝和孢子中可见多个明亮、圆形的荧光点,与DAPI染色共定位。标记过氧化物酶体的菌株中,菌丝和孢子中可见小点状绿色或红色荧光,在脂类物质诱导下荧光点数量明显增加,符合过氧化物酶体分布及动态特征。细胞壁染色结果显示,细胞壁染色产生的蓝色荧光与红、绿荧光蛋白的荧光互不干扰,标记效果良好。【结论】获得了理想的过氧化物酶体或细胞核荧...     

Chromosomal integration and expression of green fluorescent protein in Zymomonas mobilis

An integrative vector was constructed to allow expression of heterologous proteins into the adhB locus of Zymomonas mobilis. As a reporter gene, the ORF of a bright variant of green fluorescent protein from Aequorea victoria (GFPuv) was fused to the adhB strong promoter from Z. mobilis by using a two-step PCR strategy. Z. mobilis recombinant strains that were stably marked by precise gene replacement at adhB locus with a single chromosomal copy of gfpuv. Protein expression was confirmed by fluorescence microscopy and measured by fluorescence spectroscopy, showing high expression levels (12 to 30 times higher than those obtained in E. coli) without affecting the host growth.     

Notes on three Japanese Agaricales

Three species of Agaricales from Japan are treated here. 1) From the examination of the types and additional specimens,Lyophyllum nigrescens is conspecific withHydropus nigrita from Cuba. 2)Hydropus kansaiensis sp. nov. from Otsu appears close toTrogia mellea from Malaysia. 3)Alnicola lactariolens sp. nov. from Otsu is a distinctive species in this genus because of the purple color of its spore print.This work has been supported by a grant to one of us (H. C.) by the Japanese Society for the Promotion of Science in 1988/89.     

Influence of celestial light on visual and olfactory behavior of seed chalcids (Hymenoptera: Eurytomidae)

When the alfalfa [Bruchophagus roddi (Gussakovsky)], clover [Bruchophagus gibbus (Boheman)], and trefoil seed chaldds (TSC) [Bruchophagus platypterus (Walker)] were exposed to yellow, white, green, and purple painted polyethylene vials perforated by four small holes, only the latter species had a color preference, and that was for yellow, the color of its host flower. When TSC were exposed to green and yellow targets 5 h after sunrise, they preferred yellow targets but not 1 h after sunrise. The possibility of a circadian response was eliminated because different sequences of light-dark regimes prior to the test did not change the results. When TSC were exposed only to yellow targets, half of which had trefoil flowers hidden within, females preferred targets with flowers. When an identical test was conducted but with green instead of yellow targets, the preference for targets with flowers disappeared. In a four-choice test, TSC preferred yellow targets with or without flowers to green targets with or without flowers. Thus, TSC displayed an olfactory response only when the color yellow was present. In unfiltered skylight females preferred baited targets when the test began 3 h before or 1 h after solar noon but not 4 h before or 2 h after solar noon. Chalcids did display an olfactory preference 4 h before solar noon when a Polaroid filter was used to filter skylight and provide an east-west but not a north-south E-vector. When Helmholtz coils were used to apply a magnetic field that canceled or changed the direction of the earth's magnetic field, olfactory preference disappeared because the applied magnetic field changed TSC perception of the E-vector. In effect, TSC must perceive yellow in the presence of an east-west E-vector to display an olfactory preference to a choice of odors. We believe this is the first report that the E-vector of celestial light can influence olfactory and visual behavior of an insect.     

Steroid correlates of multiple color traits in the spiny lizard, <Emphasis Type="Italic">Sceloporus pyrocephalus</Emphasis>

Conspicuous coloration in females is less well studied compared to that in males. Adult female Mexican boulder spiny lizards (Sceloporus pyrocephalus) have conspicuously colored throat, or gular, regions, ranging from red to yellow, while adult males only weakly express such color in their gular region. Both sexes have dark blue–black gular stripes and venter stripes. Understanding proximate mechanisms underlying trait expression can aid in understanding trait function. To characterize the proximate mechanisms potentially influencing color variation among field-captured male and female S. pyrocephalus, we quantified three aspects of color (hue, saturation, brightness) for three body locations (gular region, gular stripes, venter stripes) and then assessed how color was related to reproductive state and concentrations of the plasma steroid hormones testosterone (T) and corticosterone (CORT) in males and T, CORT, and 17-β estradiol (E₂) in females. Testes volume was not related to variation in color or in hormones, perhaps because most males were in peak reproductive condition. Large vitellogenic follicles as opposed to oviductal eggs were associated with higher E₂ in females. Males with more dull gular stripes and females with dull venter stripes had significantly higher CORT. Females with red gular regions and pale grey gular stripes had higher T and E₂ concentrations compared to females with a more yellow gular region and darker gular stripes. Thus, gular region color in females could communicate reproductive state; dull gular stripes in males and dull venter stripes in females could communicate stress status.     

Priority of color over scent during flower visitation by adult <Emphasis Type="Italic">Vanessa indica</Emphasis> butterflies

Most flower visitors innately prefer a particular color and scent, and use them as cues for flower recognition and selection. However, in most cases, since color and scent serve as a combined signal, not only does the preference for an individual cue, but also the preference hierarchy among different cues, influence their flower visitation. In the present study, we attempted to reveal (1) the chromatic and (2) the olfactory cues that stimulate flower visiting, and (3) the preference hierarchy between these cues, using the naïve adult butterfly Vanessa indica. When we offered 12 different-colored (six chromatic and six achromatic) paper flower models, V. indica showed a color preference for yellow and blue. When we examined the proboscis extension reflex (PER) of V. indica towards 16 individual compounds identified in the floral scents from two nectar plants belonging to the family Compositae, Taraxacum officinale and Cirsium japonicum, six compounds were found to have relatively high PER-eliciting activities, including benzaldehyde, acetophenone, and (E+Z)-nerolidol. When we combined color and scent cues in two-choice bioassays, where butterflies were offered flower models that were purple (a relatively unattractive color), the models scented with these active compounds were significantly more attractive than the odorless controls. In addition, synthetic blends mimicking the floral scents of T. officinale and C. japonicum (at doses equivalent to that of ten flowers) enhanced the number of visits to the scented models. However, the effect of odorizing was not conspicuous in parallel bioassays when yellow flower models were used, and the butterflies also significantly preferred odorless yellow models to scented purple models. These results demonstrate that V. indica depends primarily on color and secondarily on scent during flower visitation.