The action mode of the ribosome-inactivating protein α-sarcin

Based on the tertiary structure of the ribosome-inactivating protein alpha-sarcin, domains that are responsible for hydrolyzing ribosomes and naked RNA have been dissected. In this study, we found that the head-to-tail interaction between the first amino beta-strand and the last carboxyl beta-strand is not involved in catalyzing the hydrolysis of ribosomes or ribonucleic acids. Instead, a four-strand pleated beta-sheet is indispensable for catalyzing both substrates, suggesting that alpha-sarcin and ribonuclease T1 (RNase T1) share a similar catalytic center. The integrity of an amino beta-hairpin and that of the loop L3 in alpha-sarcin are crucial for recognizing and hydrolyzing ribosomes in vitro and in vivo. However, a mutant protein without the beta-hairpin structure, or with a disrupted loop L3, is still capable of digesting ribonucleic acids. The functional involvement of the beta-hairpin and the loop L3 in the sarcin stem/loop RNA of ribosomes is demonstrated by a docking model, suggesting that the two structures are in essence naturally designed to distinguish ribosome-inactivating proteins from RNase T1 to inactivate ribosomes.     

Does it matter who pulls the switch? Perceptions of intentions in the trolley dilemma

This research examines the automatic moral and intentional inferences that third parties generate as a function of outcomes for the actor. Participants were asked about the moral acceptability of redirecting a train to save five lives by sacrificing one, as well as the intentions of the person directing the train, and the consequences of doing so. Actor position was varied with respect to whether the person redirecting the train stood to benefit by doing so. Across four studies in international and US samples, participants rated the redirection as less morally acceptable or more punishable when the actor redirecting the train was saving their own life in the process. The implications of these findings for moral claims are discussed.     

The origin of the pelagobenthic metazoan life cycle: what's sex got to do with it?

The biphasic (pelagobenthic) life cycle is found throughoutthe animal kingdom, and includes gametogenesis, embryogenesis,and metamorphosis. From a tangled web of hypotheses on the originand evolution of the metazoan pelagobenthic life cycle, currentopinion appears to favor a simple, larval-like holopelagic ancestorthat independently settled multiple times to incorporate a benthicphase into the life cycle. This hypothesis derives originallyfrom Haeckel's (1874) Gastraea theory of ontogeny recapitulatingphylogeny, in which the gastrula is viewed as the recapitulationof a gastraean ancestor that evolved via selection on a simple,planktonic hollow ball of cells to develop the capacity to feed.Here, we propose an equally plausible hypothesis that the originof the metazoan pelagobenthic life cycle was a direct consequenceof sexual reproduction in a likely holobenthic ancestor. Indoing so, we take into account new insights from poriferan developmentand from molecular phylogenies. In this scenario, the gastruladoes not represent a recapitulation, but simply an embryologicalstage that is an outcome of sexual reproduction. The embryocan itself be considered as the precursor to a biphasic lifestyle,with the embryo representing one phase and the adult anotherphase. This hypothesis is more parsimonious because it precludesthe need for multiple, independent origins of the benthic form.It is then reasonable to consider that multilayered, ciliatedembryos ultimately released into the water column are subjectto natural selection for dispersal/longevity/feeding that setsthem on the evolutionary trajectory towards the crown metazoanplanktonic larvae. These new insights from poriferan developmentthus clearly support the intercalation hypothesis of bilaterianlarval evolution, which we now believe should be extended todiscussions of the origin of biphasy in the metazoan last commonancestor.     

Hyponatremia: Is it related to the seasons?

BackgroundHyponatremia is a common electrolyte disorder in inpatients related to morbidity and mortality. In this study, we aimed to examine whether there is a relationship between the incidence of hyponatremia and the seasons among the patients hospitalized in our nephrology department.MethodsThe inpatients in our Nephrology Department between 2012 and 2015 were retrospectively analyzed. The patients with serum sodium levels below 135 mmol/L were included in the study. Hyponatremia incidence was calculated as the proportion of inpatients with low sodium levels in a season to the total number of inpatients in the same season.ResultsOut of 1950 inpatients in four years, 509 were found to have hyponatremia (26.1%). The mean serum sodium level of the patients was 129.7±4.7 mmol/L. Hyponatremia incidences in autumn, winter, spring, and summer were found to be 28.7%, 15.4%, 20.4%, and 36.6%, respectively. Upon comparing the incidence of hyponatremia in patients hospitalized in winter and summer seasons, there was a significantly higher incidence of hyponatremia in summer (p<0.001). We found a positive correlation between hyponatremia incidence and temperature (r=0.867, p=0.001). However, there was a negative correlation between hyponatremia incidence and relative humidity (r=-0.735, p=0.001).ConclusionsThe highest hyponatremia incidence was observed in summer in a four-year period. Loss of sodium by perspiration, along with increased temperature and/or excessive hypotonic fluid intake, might contribute to the development of hyponatremia.     

The influence of birth order on birth weight: does the sex of preceding siblings matter?

The purpose of this study was to investigate whether the well-established relationship between parity and birth weight is affected by the sex composition of siblings, especially for male newborns. Subjects were 856 male and 862 female newborns who weighed at least 2500 g at birth, who were born after 37 completed weeks of gestation, who obtained an Apgar score of 7 or higher, who had the same biological parents as all other children in the sibship, and who lived in the same household. Information on birth weight was collected from hospital records. Results showed that male newborns with older brothers weighed less than male newborns with older sisters. In contrast, the weight of female newborns with older brothers did not differ from the weight of female newborns with older sisters. One explanation of these results is that maternal immunoreactivity to some male-specific feature of the fetus affects prenatal development and consequently reduces birth weight in males. The relation between older brothers and birth weight may have theoretical significance for behavioural variables.     

Is sexual dimorphism affected by the combined action of prenatal stress and sex ratio?

During embryonic development, offspring are exposed to hormones of both maternal and sibling origin. Maternal stress increases offspring exposure to corticosterone, and, in polytocous animals, the sex ratio or intrauterine position can influence the levels of androgens and estrogens experienced by the offspring. Such hormone exposure has the potential to influence many important morphological and behavioural aspects of offspring, in particular sexually dimorphic traits. Although well known in rodents, the impact of prenatal hormone exposure in other vertebrates is poorly documented. We experimentally investigated the relationship between maternal stress, population density, sex ratio (a surrogate for the degree of exposure to steroids produced by siblings), and sexual dimorphism in a viviparous lizard, Lacerta vivipara. Our results show that prenatal sex ratios have consequences for sexually dimorphic morphology (ventral scale count) in both sexes, but with no effect of maternal stress or any interaction between the two. Embryonic steroid exposure can potentially be an important factor in generating individual variation in natural populations of viviparous animals.     

Is it possible to prove the existence of an aging program by quantitative analysis of mortality dynamics?

Accumulation of various types of lesions in the course of aging increases an organism’s vulnerability and results in a monotonous elevation of mortality rate, irrespective of the position of a species on the evolutionary tree. Stroustrup et al. (Nature, 530, 103–107) [1] showed in 2016 that in the nematode Caenorhabditis elegans, longevity-altering factors (e.g. oxidative stress, temperature, or diet) do not change the shape of the survival curve, but either stretch or shrink it along the time axis, which the authors attributed to the existence of an “aging program”. Modification of the accelerated failure time model by Stroustrup et al. uses temporal scaling as a basic approach for distinguishing between quantitative and qualitative changes in aging dynamics. Thus we analyzed data on the effects of various longevity-increasing genetic manipulations in flies, worms, and mice and used several models to choose a theory that would best fit the experimental results. The possibility to identify the moment of switch from a mortality-governing pathway to some other pathways might be useful for testing geroprotective drugs. In this work, we discuss this and other aspects of temporal scaling.     

The giants of the phylum Brachiopoda: a matter of diet?

The species of the brachiopod Gigantoproductus are giants within the Palaeozoic sedentary benthos. This presents a dilemma as living brachiopods have low‐energy lifestyles. Although brachiopod metabolic rates were probably higher during the Palaeozoic than today, the massive size reached by species of Gigantoproductus is nevertheless unusual. By examining the diet of Gigantoproductus species from the Visean (Mississippian, Carboniferous) of Derbyshire (UK), we seek to understand the mechanisms that enabled those low‐metabolism brachiopod species to become giants. Were they suspension feeders, similar to all other brachiopods, or did endosymbiosis provide a lifestyle that allowed them to have higher metabolic rates and become giants? We suggest that the answer to this conundrum may be solved by the identification of the biogeochemical signatures of symbionts, through combined analyses of the carbon and nitrogen‐isotopic compositions of the occluded organic matrix within their calcite shells. The shells are formed of substructured columnar units that are remarkably long and a few hundreds of microns wide, deemed to be mostly pristine based on multiple analyses (petrography, cathodoluminescence (CL), scanning electron microscopy (SEM), electron backscatter diffraction (EBSD), transmission electron microscopy (TEM)); they contain occluded organic fractions detected by TEM, nuclear magnetic resonance (NMR) and gas chromatography mass spectrometry (GC‐MS) analyses. We conclude that the gigantic size reached by the species of Gigantoproductus is probably the result of a mixotroph lifestyle, by which they could rely on the energy and nutrients derived both from photosymbiotic microbes and from filtered particulate food.     

On the Influence of Observation of the Processes in Quantum Systems: Is it Possible to Determine an Observer Effect in Biological Systems?

Biophysics - Abstract—The issue of how observation of a process in quantum mechanics may influence its outcome is described by case studies of quantum emission by a two-level system and the...     

Stereum sanguinolentum: Is it an amphithallic basidiomycete?

Monobasidiospore isolates were prepared from basidiocarps of Stereum sanguinolentum. Five isolates per basidiome were paired with each other and with isolates from the trama. Interbasidiome pairings of the trama isolates and of a selection of single-spore isolates also were performed. Thin sections of the hymenium were stained with DAPI and examined by fluorescence microscopy to study the nuclei in the basidia. Spore prints were stained with DAPI to count the number of nuclei per spore. SEM was used to determine the number of basidiospores per basidium. All intrabasidiome pairings were compatible. In contrast, interbasidiome pairings, except one, were incompatible, independent of whether single-spore or trama isolates were paired. Fertile basidiomes were formed in single-basidiospore cultures. Basidia were regularly four-spored. On average, 5% of the basidiospores possessed one nucleus, 82% two, 2% three and 1% four nuclei. Ten percent of the spores appeared to be empty. Karyogamy, meiosis and postmeiotic mitosis were observed in the basidia. Nuclei resulting directly from meiosis, i.e., without having undergone postmeiotic mitosis, sometimes were observed in the sterigmata or spore primordia. The high number of vegetative compatibility groups (VCG) of S. sanguinolentum observed in this study and earlier studies is difficult to explain without sexual or parasexual recombination. We suppose that the majority of spores with ≥2 nuclei are amphithallic, possessing at least one nucleus of each mating type. Recombination could occur by exchange of nuclei among VCGs via anastomoses between homothallic compartments. Transfer of nuclei from heterothallic to homothallic mycelia or matings between homothallic mycelia, which originate from monokaryotic spores, might be other paths for gene exchange.