Nitrous oxide production, its source and distribution in urine patches on grassland on peat soil

Urine patches are considered to be important sites for nitrous oxide (N₂O) production through nitrification and denitrification due to their high concentration of nitrogen (N). The aim of the present study was to determine the microbial source and size of production of N₂O in different zones of a urine patch on grassland on peat soil. Artificial urine was applied in elongated patches of 4.5 m. Four lateral zones were distinguished and sampled for four weeks using an intact soil core incubation method. Incubation of soil cores took place without any additions to the headspace to determine total N₂O production, with acetylene addition to determine total denitrification (N₂O+N₂), and with methyl fluoride to determine the N₂O produced through denitrification.Nitrous oxide production was largest in the centre and decreased towards the edge of the patch. Maximum N₂O production was about 50 mg N m^–2 d^–1 and maximum denitrification activity was 70 mg N m^–2 d^–1. Nitrification was the main N₂O producing process. Nitrous oxide production through denitrification was only of significance when denitrification activity was high. Total N loss through nitrification and denitrification over 31 days was 4.1 g N per patch which was 2.2% of the total applied urine-N.     

Dinitrogen oxide production by a mixed culture of nitrifying bacteria during ammonia shock loading and aeration failure

A number of experiments was conducted in order to establish if N₂O in the exhaust gas from an aerobic consortium of nitrifiers could be used as an indicator for monitoring the nitrification process. Laboratory-scale experiments with an activated sludge system showed a strong correlation between ammonia shock loads and both the concentration of N₂O and the rate of increase of N₂O in the exhaust gas for shock loads less than 1.60 mg ammonical nitrogen (NH₃-N) per g total suspended solids (TSS). For greater ammonia shock loads, correlation was found between build-up of nitrite in the aeration tank and the concentration of N₂O in the exhaust gas from the tank. When subjecting the system to aeration failure, a similar pattern was seen, with a correlation between nitrite build-up in the aeration tank and increases in the concentration of N₂O in the exhaust gas. The results from this work suggest that the changes in N₂O concentration in the exhaust gas from a nitrifying process may be a useful parameter for monitoring such processes. Received 15 October 2001/ Accepted in revised form 05 June 2002     

Estimation of nitrous oxide, nitric oxide and ammonia emissions from croplands in East, Southeast and South Asia

Agricultural activities have greatly altered the global nitrogen (N) cycle and produced nitrogenous gases of environmental significance. More than half of all chemical N fertilizer produced globally is used in crop production in East, Southeast and South Asia, where rice is central to nutrition. Emissions of nitrous oxide (N₂O), nitric oxide (NO) and ammonia (NH₃) from croplands in this region were estimated by considering background emission and emissions resulting from N added to croplands, including chemical N, animal manure, biologically fixed N and N in crop residues returned to fields. Background emission fluxes of N₂O and NO from croplands were estimated to be 1.22 and 0.57 kg N ha^?1 yr^?1, respectively. Separate fertilizer‐induced emission factors were estimated for upland fields and rice fields. Total N₂O emission from croplands in the study region was estimated to be 1.19 Tg N yr^?1, with 43% contributed by background emissions. The average fertilizer‐induced N₂O emission, however, accounts for only 0.93% of the applied N, which is less than the default IPCC value of 1.25%, because of the low emission factor from paddy fields. Total NO emission was 591 Gg N yr^?1 in the study region, with 40% from background emissions. The average fertilizer‐induced NO emission factor was 0.48%. Total NH₃ emission was estimated to be 11.8 Tg N yr^?1. The use of urea and ammonium bicarbonate and the cultivation of rice led to a high average NH₃ loss rate from chemical N fertilizer in the study region. Emissions were displayed at a 0.5° × 0.5° resolution with the use of a global landuse database.     

The production and emission of nitrous oxide from headwater streams in the Midwestern United States

The emission of nitrous oxide (N₂O) from streams draining agricultural landscapes is estimated by the Intergovernmental Panel on Climate Change (IPCC) to constitute a globally significant source of this gas to the atmosphere, although there is considerable uncertainty in the magnitude of this source. We measured N₂O emission rates and potential controlling variables in 12 headwater streams draining a predominantly agricultural basin on glacial terrain in southwestern Michigan. The study sites were nearly always supersaturated with N₂O and emission rates ranged from ?8.9 to 266.8 μg N₂O‐N m^?2 h^?1 with an overall mean of 35.2 μg N₂O‐N m^?2 h^?1. Stream water NO₃^? concentrations best‐predicted N₂O emission rates. Although streams and agricultural soils in the basin had similar areal emission rates, emissions from streams were equivalent to 6% of the anthropogenic emissions from soils because of the vastly greater surface area of soils. We found that the default value of the N₂O emission factor for streams and groundwater as defined by the IPCC (EF5‐g) was similar to the value observed in this study lending support to the recent downward revision to EF5‐g. However, the EF5‐g spanned four orders of magnitude across our study sites suggesting that the IPCC's methodology of applying one emission factor to all streams may be inappropriate.     

Nitrous oxide emissions from agricultural fields: Assessment, measurement and mitigation

In this paper we discuss three topics concerning N₂O emissions from agricultural systems. First, we present an appraisal of N₂O emissions from agricultural soils (Assessment). Secondly, we discuss some recent efforts to improve N₂O flux estimates in agricultural fields (Measurement), and finally, we relate recent studies which use nitrification inhibitors to decrease N₂O emissions from N-fertilized fields (Mitigation).To assess the global emission of N₂O from agricultural soils, the total flux should represent N₂O from all possible sources; native soil N, N from recent atmospheric deposition, past years fertilization, N from crop residues, N₂O from subsurface aquifers below the study area, and current N fertilization. Of these N sources only synthetic fertilizer and animal manures and the area of fields cropped with legumes have sufficient global data to estimate their input for N₂O production. The assessment of direct and indirect N₂O emissions we present was made by multiplying the amount of fertilizer N applied to agricultural lands by 2% and the area of land cropped to legumes by 4 kg N₂O-N ha^-1. No regard to method of N application, type of N, crop, climate or soil was given in these calculations, because the data are not available to include these variables in large scale assessments. Improved assessments should include these variables and should be used to drive process models for field, area, region and global scales.Several N₂O flux measurement techniques have been used in recent field studies which utilize small and ultralarge chambers and micrometeorological along with new analytical techniques to measure N₂O fluxes. These studies reveal that it is not the measurement technique that is providing much of the uncertainty in N₂O flux values found in the literature but rather the diverse combinations of physical and biological factors which control gas fluxes. A careful comparison of published literature narrows the range of observed fluxes as noted in the section on assessment. An array of careful field studies which compare a series of crops, fertilizer sources, and management techniques in controlled parallel experiments throughout the calendar year are needed to improve flux estimates and decrease uncertainty in prediction capability.There are a variety of management techniques which should conserve N and decrease the amount of N application needed to grow crops and to limit N₂O emissions. Using nitrification inhibitors is an option for decreasing fertilizer N use and additionally directly mitigating N₂O emissions. Case studies are presented which demonstrate the potential for using nitrification inhibitors to limit N₂O emissions from agricultural soils. Inhibitors may be selected for climatic conditions and type of cropping system as well as the type of nitrogen (solid mineral N, mineral N in solution, or organic waste materials) and applied with the fertilizers.     

Characterization of microbial NO production, N2O production and CH4 oxidation initiated by aeration of anoxic rice field soil

Intermittent drainage of rice fields isdiscussed as an option to mitigate emission ofCH₄, an important greenhouse gas. HoweverN₂O, a potentially more effective greenhouse gas,may be emitted during the aeration phase. Therefore,the metabolism of NO, N₂O, NH ,NO and NO and the kinetics ofCH₄ oxidation were measured after aeration ofmethanogenic rice field soil. Before aeration, thesoil contained NH in relatively highconcentrations (about 4 mM), while NO andNO were almost undetectable. Immediatelyafter aeration both NO and N₂O were produced withrates of about 15 pmol h^-1 gdw^-1 and 5 pmolh^-1 gdw^-1, respectively. Simultaneously,NH decreased while NO accumulated. Later on, NO was depletedwhile NO concentrations increased.Characteristic phases of nitrogen turnover wereassociated with the activities of ammonium oxidizers,nitrite oxidizers and denitrifiers. Oxidation ofNH and production of NO and N₂O wereinhibited by 10 Pa acetylene demonstrating thatnitrification was obligatory for the initiation ofnitrogen turnover and production of NO and N₂O.Ammonium oxidation was not limited by the availableNH and thus, concomittant production of NOand N₂O was not stimulated by addition ofNH . However, addition of NO stimulated production of NO and N₂O in bothanoxic and aerated rice soil slurries. In this case,10 Pa acetylene did not inhibit the production of NOand N₂O demonstrating that it was due todenitrification which was obviously limited by theavailability of NO . In the aerated soilslurries CH₄ was only oxidized if present atelevated concentrations >50 ppmv CH₄). Atatmospheric CH₄ concentrations (1.7 ppmv)CH₄ was not consumed, but was even slightly produced.CH₄ oxidation activity increased afterpreincubation at 20% CH₄, and then CH₄was also oxidized at atmospheric concentrations. CH₄oxidation kinetics exhibited sigmoid characteristicsat low CH₄ concentrations presumably because ofinhibition of CH₄ oxidation by NH .     

Fluxes of nitrous oxide from boreal peatlands as affected by peatland type,water table level and nitrification capacity

Peat soils with high nitrogen content are potential sources of nitrous oxide (N₂O). Fluxes of nitrous oxide were measuredin situ on nine virgin and ten drained peatlands of different hydrology and nutrient status. Numbers of nitrifying bacteria were estimated in different layers of the peat profiles with a most-probable-number technique. Nitrification potentials were determined in soil slurries of pH 4 and 6 from the profiles of six peat soils. Many virgin peatlands showed low N₂O uptake. Lowering of the water table generally increased the average fluxes of N₂O from the soils, although more in minerotrophic (nutrient rich) than in ombrotrophic (nutrient poor) sites. Ammonium oxidizing bacteria were found on only two sites but nitrite oxidizers were detected in almost all peat profiles. More nitrite oxidizers were found in drained than in virgin peat profiles. Nitrification was enhanced after lowering of the water table in minerotrophic peat but not in ombrotrophic peat. The N₂O fluxes correlated positively with the numbers of nitrite oxidizers, nitrification potential, N, P and Ca content and pH of the soil and negatively with the level of water table (expressed as negative values) and K content of the soil.     

Nitrite-driven nitrous oxide production under aerobic soil conditions: kinetics and biochemical controls

Nitrite (NO₂⁻) can accumulate during nitrification in soil following fertilizer application. While the role of NO₂⁻ as a substrate regulating nitrous oxide (N₂O) production is recognized, kinetic data are not available that allow for estimating N₂O production or soil‐to‐atmosphere fluxes as a function of NO₂⁻ levels under aerobic conditions. The current study investigated these kinetics as influenced by soil physical and biochemical factors in soils from cultivated and uncultivated fields in Minnesota, USA. A linear response of N₂O production rate () to NO₂⁻ was observed at concentrations below 60 μg N g⁻¹ soil in both nonsterile and sterilized soils. Rate coefficients (K_p) relating to NO₂⁻ varied over two orders of magnitude and were correlated with pH, total nitrogen, and soluble and total carbon (C). Total C explained 84% of the variance in K_p across all samples. Abiotic processes accounted for 31–75% of total N₂O production. Biological reduction of NO₂⁻ was enhanced as oxygen (O₂) levels were decreased from above ambient to 5%, consistent with nitrifier denitrification. In contrast, nitrate (NO₃⁻)‐reduction, and the reduction of N₂O itself, were only stimulated at O₂ levels below 5%. Greater temperature sensitivity was observed for biological compared with chemical N₂O production. Steady‐state model simulations predict that NO₂⁻ levels often found after fertilizer applications have the potential to generate substantial N₂O fluxes even at ambient O₂. This potential derives in part from the production of N₂O under conditions not favorable for N₂O reduction, in contrast to N₂O generated from NO₃⁻ reduction. These results have implications with regard to improved management to minimize agricultural N₂O emissions and improved emissions assessments.     

Diurnal fluctuations of dissolved nitrous oxide (N2O) concentrations and estimates of N2O emissions from a spring-fed river: implications for IPCC methodology

There is uncertainty in the estimates of indirect nitrous oxide (N₂O) emissions as defined by the Intergovernmental Panel on Climate Change (IPCC). The uncertainty is due to the challenge and dearth of in situ measurements. Recent work in a subtropical stream system has shown the potential for diurnal variability to influence the downstream N transfer, N form, and estimates of in‐stream N₂O production. Studies in temperate stream systems have also shown diurnal changes in stream chemistry. The objectives of this study were to measure N₂O fluxes and dissolved N₂O concentrations from a spring‐fed temperate river to determine if diurnal cycles were occurring. The study was performed during a 72 h period, over a 180 m reach, using headspace chamber methodology. Significant diurnal cycles were observed in radiation, river temperature and chemistry including dissolved N₂O‐N concentrations. These data were used to further assess the IPCC methodology and experimental methodology used. River NO₃‐N and N₂O‐N concentrations averaged 3.0 mg L⁻¹ and 1.6 μg L⁻¹, respectively, with N₂O saturation reaching a maximum of 664%. The N₂O‐N fluxes, measured using chamber methodology, ranged from 52 to 140 μg m⁻² h⁻¹ while fluxes predicted using the dissolved N₂O concentration ranged from 13 to 25 μg m⁻² h⁻¹. The headspace chamber methodology may have enhanced the measured N₂O flux and this is discussed. Diurnal cycles in N₂O% saturation were not large enough to influence downstream N transfer or N form with variability in measured N₂O fluxes greater and more significant than diurnal variability in N₂O% saturation. The measured N₂O fluxes, extrapolated over the study reach area, represented only 6 × 10⁻⁴% of the NO₃‐N that passed through the study reach over a 72 h period. This is only 0.1% of the IPCC calculated flux.     

Seasonal variation in N2O emissions from urine patches: Effects of urine concentration, soil compaction and dung

Urine patches in pastures rank among the highest sources of the greenhouse gas nitrous oxide (N₂O) from animal production systems. Previous laboratory studies indicate that N₂O emissions for urine-N in pastures may increase with a factor five or eight in combination with soil compaction and dung, respectively. These combinations of urine, compaction and dung occur regularly in pastures, especially in so-called camping areas. The aims of this study were (i) to experimentally quantify the effect of compaction and dung on emission factors of N₂O from urine patches under field conditions; (ii) to detect any seasonal changes in emission from urine patches; and (iii) to quantify possible effects of urine concentration and -volume. A series of experiments on the effects of compaction, dung, urine-N concentration and urine volume was set up at a pasture on a sandy soil (typic Endoaquoll) in Wageningen, the Netherlands. Artificial urine was applied 8 times in the period August 2000–November 2001, and N₂O emissions were monitored for a minimum of 1 month after each application. The average emission factor for urine-only treatments was 1.55%. Over the whole period, only soil compaction had a clear significant effect, raising the average N₂O emissions from urine patches from 1.30% to 2.92% of the applied N. Dung had no consistent effect; although it increased the average emissions from 1.60% to 2.82%, this was clearly significant (P< 0.01) for only one application date and marginally significant (P=0.054) for the whole experiment. Both compaction and dung increased water-filled pore space (WFPS) of the topsoil for a more prolonged time than high urine volumes. No effect of amount of urine-N or urine volume on N₂O emissions relative to added N was detected for the whole experiment. There were clear differences between application dates, with highest emissions for urine-only treatments of 4.25% in October, 2000, and lowest of –0.11% in June, 2001. Emissions peaked at 60–70% WFPS, and decreased rapidly with both higher and lower WFPS. We conclude that compaction leads to a considerable increase in the N₂O emissions under field conditions, mainly through higher WFPS. Dung addition may have the same effect, although this was not consistent throughout our experiment. Seasonal variations seemed mainly driven by differences in WFPS. Based on this study, mitigation strategies should focus on minimizing the grazing period with wet conditions leading to WFPS > 50%, avoiding camping areas in pastures, and on avoiding grazing under moist soil conditions. Greenhouse gas budgets for grazing conditions should include the effects of soil compaction and dung to represent actual emissions.     

Challenges for simultaneous nitrification, denitrification, and phosphorus removal in microbial aggregates: mass transfer limitation and nitrous oxide production

The microbial community composition and activity was investigated in aggregates from a lab-scale bioreactor, in which nitrification, denitrification and phosphorus removal occurred simultaneously. The biomass was highly enriched for polyphosphate accumulating organisms facilitating complete removal of phosphorus from the bulk liquid; however, some inorganic nitrogen still remained at the end of the reactor cycle. This was ascribed to incomplete coupling of nitrification and denitrification causing NO(3)(-) accumulation. After 2 h of aeration, denitrification was dependent on the activity of nitrifying bacteria facilitating the formation of anoxic zones in the aggregates; hence, denitrification could not occur without simultaneous nitrification towards the end of the reactor cycle. Nitrous oxide was identified as a product of denitrification, when based on stored PHA as carbon source. This observation is of critical importance to the outlook of applying PHA-driven denitrification in activated sludge processes.     

Soil pH as the chief modifier for regional nitrous oxide emissions: New evidence and implications for global estimates and mitigation

Nitrous oxide (N₂O) is a greenhouse gas that also plays the primary role in stratospheric ozone depletion. The use of nitrogen fertilizers is known as the major reason for atmospheric N₂O increase. Empirical bottom‐up models therefore estimate agricultural N₂O inventories using N loading as the sole predictor, disregarding the regional heterogeneities in soil inherent response to external N loading. Several environmental factors have been found to influence the response in soil N₂O emission to N fertilization, but their interdependence and relative importance have not been addressed properly. Here, we show that soil pH is the chief factor explaining regional disparities in N₂O emission, using a global meta‐analysis of 1,104 field measurements. The emission factor (EF) of N₂O increases significantly (p < .001) with soil pH decrease. The default EF value of 1.0%, according to IPCC (Intergovernmental Panel on Climate Change) for agricultural soils, occurs at soil pH 6.76. Moreover, changes in EF with N fertilization (i.e. ΔEF) is also negatively correlated (p < .001) with soil pH. This indicates that N₂O emission in acidic soils is more sensitive to changing N fertilization than that in alkaline soils. Incorporating our findings into bottom‐up models has significant consequences for regional and global N₂O emission inventories and reconciling them with those from top‐down models. Moreover, our results allow region‐specific development of tailor‐made N₂O mitigation measures in agriculture.     

A paradigm shift towards low-nitrifying production systems: the role of biological nitrification inhibition (BNI)

Background

Agriculture is the single largest geo-engineering initiative that humans have initiated on planet Earth, largely through the introduction of unprecedented amounts of reactive nitrogen (N) into ecosystems. A major portion of this reactive N applied as fertilizer leaks into the environment in massive amounts, with cascading negative effects on ecosystem health and function. Natural ecosystems utilize many of the multiple pathways in the N cycle to regulate N flow. In contrast, the massive amounts of N currently applied to agricultural systems cycle primarily through the nitrification pathway, a single inefficient route that channels much of this reactive N into the environment. This is largely due to the rapid nitrifying soil environment of present-day agricultural systems.

Scope

In this Viewpoint paper, the importance of regulating nitrification as a strategy to minimize N leakage and to improve N-use efficiency (NUE) in agricultural systems is highlighted. The ability to suppress soil nitrification by the release of nitrification inhibitors from plant roots is termed ‘biological nitrification inhibition’ (BNI), an active plant-mediated natural function that can limit the amount of N cycling via the nitrification pathway. The development of a bioassay using luminescent Nitrosomonas to quantify nitrification inhibitory activity from roots has facilitated the characterization of BNI function. Release of BNIs from roots is a tightly regulated physiological process, with extensive genetic variability found in selected crops and pasture grasses. Here, the current status of understanding of the BNI function is reviewed using Brachiaria forage grasses, wheat and sorghum to illustrate how BNI function can be utilized for achieving low-nitrifying agricultural systems. A fundamental shift towards ammonium (NH₄⁺)-dominated agricultural systems could be achieved by using crops and pastures with high BNI capacities. When viewed from an agricultural and environmental perspective, the BNI function in plants could potentially have a large influence on biogeochemical cycling and closure of the N loop in crop–livestock systems.     

Global soil nitrous oxide emissions since the preindustrial era estimated by an ensemble of terrestrial biosphere models: Magnitude,attribution, and uncertainty

Our understanding and quantification of global soil nitrous oxide (N₂O) emissions and the underlying processes remain largely uncertain. Here, we assessed the effects of multiple anthropogenic and natural factors, including nitrogen fertilizer (N) application, atmospheric N deposition, manure N application, land cover change, climate change, and rising atmospheric CO₂ concentration, on global soil N₂O emissions for the period 1861–2016 using a standard simulation protocol with seven process‐based terrestrial biosphere models. Results suggest global soil N₂O emissions have increased from 6.3 ± 1.1 Tg N₂O‐N/year in the preindustrial period (the 1860s) to 10.0 ± 2.0 Tg N₂O‐N/year in the recent decade (2007–2016). Cropland soil emissions increased from 0.3 Tg N₂O‐N/year to 3.3 Tg N₂O‐N/year over the same period, accounting for 82% of the total increase. Regionally, China, South Asia, and Southeast Asia underwent rapid increases in cropland N₂O emissions since the 1970s. However, US cropland N₂O emissions had been relatively flat in magnitude since the 1980s, and EU cropland N₂O emissions appear to have decreased by 14%. Soil N₂O emissions from predominantly natural ecosystems accounted for 67% of the global soil emissions in the recent decade but showed only a relatively small increase of 0.7 ± 0.5 Tg N₂O‐N/year (11%) since the 1860s. In the recent decade, N fertilizer application, N deposition, manure N application, and climate change contributed 54%, 26%, 15%, and 24%, respectively, to the total increase. Rising atmospheric CO₂ concentration reduced soil N₂O emissions by 10% through the enhanced plant N uptake, while land cover change played a minor role. Our estimation here does not account for indirect emissions from soils and the directed emissions from excreta of grazing livestock. To address uncertainties in estimating regional and global soil N₂O emissions, this study recommends several critical strategies for improving the process‐based simulations.     

Soil nitrogen cycling and nitrous oxide flux in a Rocky Mountain Douglas-fir forest: effects of fertilization,irrigation and carbon addition

Nitrous oxide fluxes and soil nitrogen transformations were measured in experimentally-treated high elevation Douglas-fir forests in northwestern New Mexico, USA. On an annual basis, forests that were fertilized with 200 kg N/ha emitted an average of 0.66 kg/ha of N₂O-N, with highest fluxes occurring in July and August when soils were both warm and wet. Control, irrigated, and woodchip treated plots were not different from each other, and annual average fluxes ranged from 0.03 to 0.23 kg/ha. Annual net nitrogen mineralization and nitrate production were estimated in soil and forest floor usingin situ incubations; fertilized soil mineralized 277 kg ha⁻¹ y⁻¹ in contrast to 18 kg ha⁻¹ y⁻¹ in control plots. Relative recovery of¹⁵NH₄-N applied to soil in laboratory incubations was principally in the form of NO³-N in the fertilized soils, while recovery was mostly in microbial biomass-N in the other treatments. Fertilization apparently added nitrogen that exceeded the heterotrophic microbial demand, resulting in higher rates of nitrate production and higher nitrous oxide fluxes. Despite the elevated nitrous oxide emission resulting from fertilization, we estimate that global inputs of nitrogen into forests are not currently contributing significantly to the increasing concentrations of nitrous oxide in the atmosphere.     

Benefits and trade‐offs of replacing synthetic fertilizers by animal manures in crop production in China: A meta‐analysis

Recycling of livestock manure to agricultural land may reduce the use of synthetic fertilizer and thereby enhance the sustainability of food production. However, the effects of substitution of fertilizer by manure on crop yield, nitrogen use efficiency (NUE), and emissions of ammonia (NH₃), nitrous oxide (N₂O) and methane (CH₄) as function of soil and manure properties, experimental duration and application strategies have not been quantified systematically and convincingly yet. Here, we present a meta‐analysis of these effects using results of 143 published studies in China. Results indicate that the partial substitution of synthetic fertilizers by manure significantly increased the yield by 6.6% and 3.3% for upland crop and paddy rice, respectively, but full substitution significantly decreased yields (by 9.6% and 4.1%). The response of crop yields to manure substitution varied with soil pH and experimental durations, with relatively large positive responses in acidic soils and long‐term experiments. NUE increased significantly at a moderate ratio (<40%) of substitution. NH₃ emissions were significantly lower with full substitution (62%–77%), but not with partial substitution. Emissions of CH₄ from paddy rice significantly increased with substitution ratio (SR), and varied by application rates and manure types, but N₂O emissions decreased. The SR did not significantly influence N₂O emissions from upland soils, and a relative scarcity of data on certain manure characteristic was found to hamper identification of the mechanisms. We derived overall mean N₂O emission factors (EF) of 0.56% and 0.17%, as well as NH₃ EFs of 11.1% and 6.5% for the manure N applied to upland and paddy soils, respectively. Our study shows that partial substitution of fertilizer by manure can increase crop yields, and decrease emissions of NH₃ and N₂O, but depending on site‐specific conditions. Manure addition to paddy rice soils is recommended only if abatement strategies for CH₄ emissions are also implemented.