共查询到20条相似文献,搜索用时 0 毫秒
1.
Gregory A. Antipa John R. Dolan Denis H. Lynn Lubov A. Obolkina Michaela C. Strüder‐Kypke 《The Journal of eukaryotic microbiology》2016,63(5):642-650
Peniculistoma mytili and Mytilophilus pacificae are placed in the pleuronematid scuticociliate family Peniculistomatidae based on morphology and ecological preference for the mantle cavity of mytiloid bivalves. We tested this placement with sequences of the small subunit rRNA (SSUrRNA) and cytochrome c oxidase subunit 1 (cox1) genes. These species are very closely related sister taxa with no distinct genetic difference in the SSUrRNA sequence but about 21% genetic difference for cox1, supporting their placement together but separation as distinct taxa. Using infection frequencies, M. pacificae, like its sister species P. mytili, does not interact with Ancistrum spp., co‐inhabitants of the mantle cavity. On the basis of these ecological similarities, the fossil record of host mussels, and features of morphology and stomatogenesis of these two ciliates, we argue that M. pacificae derived from a Peniculistoma‐like ancestor after divergence of the two host mussels. Our phylogenetic analyses of pleuronematid ciliates includes the SSUrRNA gene sequence of Sulcigera comosa, a Histiobalantium‐like ciliate from Lake Baikal. We conclude: (i) that the pleuronematids are a monophyletic group; (ii) that the genus Pleuronema is paraphyletic; and (iii) that S. comosa is a Histiobalantium species. We transfer S. comosa to Histiobalantium and propose a new combination Histiobalantium comosa n. comb. 相似文献
2.
Differential loss of heterozygous individuals that move to the periphery of mussel aggregations, where they are at greater risk for dislodgement, has been proposed as an explanation for observed heterozygote deficiencies in blue mussels. To test the dislodgement hypothesis, correlations between heterozygosity and mussel motility, as well as characteristics of byssogenesis and byssal thread attachment strengths, were determined in a wild and a farmed population of blue mussels (Mytilus edulis) from New Hampshire, USA. Although both populations exhibited a heterozygote deficit as measured by three microsatellite loci, no relationship was found between heterozygosity and increased motility in either population. Similarly, no relationship was found between heterozygosity and byssogenesis or attachment strength. Hence, differential dislodgement is highly unlikely as a possible contributor to the loss of heterozygous individuals. 相似文献
3.
The increased pressure on the marine ecosystems highlights the need for policies and integrated approaches for sustainable management of coastal areas. Spatial planning based on geographic information of human activities, ecological structures and functions, and their associated goods and services is a fundamental component in this context. Here, we evaluate the potential of predictive modeling to provide spatial data on one ecosystem function, mussel growth for use in such processes. We developed a methodology based on statistical modeling, spatial prediction, and mapping for the relative growth of the blue mussel, Mytilus edulis. We evaluated the performance of different modeling techniques and classification schemes using empirical measurements of growth from 144 sampling sites and data on biological, chemical, and physical predictors. Following comparisons of the different techniques and schemes, we developed random forest models to predict growth along the Swedish west coast. Implemented into GIS the best model produced in this study predicts that low, intermediate, and high growth rates can be expected in 53%, 32%, and 15% of modeled area, respectively. The results of this study also suggest that the nature and quality of predictor data hold the key to improving the predictive power of models. On a more general note, this study exemplifies a feasible approach based on measuring, modeling, and mapping for obtaining scientifically based spatial information on ecosystem functions and services affected by a complex set of factors. Such information is fundamental for maritime spatial planning and ecosystem‐based management and its importance is likely to increase in the future. Because of its close link to nutrient assimilation and production yield, site‐specific information of soft tissue growth such as the map of predicted growth rate developed in this study can be used as a tool for optimizing actions aimed at mitigating eutrophication and aquaculture operations and in maritime spatial planning processes of coastal areas. 相似文献
4.
Marloes Poortvliet Gary C. Longo Kimberly Selkoe Paul H. Barber Crow White Jennifer E. Caselle Alejandro Perez‐Matus Steven D. Gaines Giacomo Bernardi 《Ecology and evolution》2013,3(13):4558-4571
In the past decade, the study of dispersal of marine organisms has shifted from focusing predominantly on the larval stage to a recent interest in adult movement. Antitropical distributions provide a unique system to assess vagility and dispersal. In this study, we have focused on an antitropical wrasse genus, Semicossyphus, which includes the California sheephead, S. pulcher, and Darwin's sheephead, S. darwini. Using a phylogenetic approach based on mitochondrial and nuclear markers, and a population genetic approach based on mitochondrial control region sequences and 10 microsatellite loci, we compared the phylogenetic relationships of these two species, as well as the population genetic characteristics within S. pulcher. While S. pulcher and S. darwini are found in the temperate eastern Pacific regions of the northern and southern hemispheres, respectively, their genetic divergence was very small (estimated to have occurred between 200 and 600 kya). Within S. pulcher, genetic structuring was generally weak, especially along mainland California, but showed weak differentiation between Sea of Cortez and California, and between mainland California and Channel Islands. We highlight the congruence of weak genetic differentiation both within and between species and discuss possible causes for maintenance of high gene flow. In particular, we argue that deep and cooler water refugia are used as stepping stones to connect distant populations, resulting in low levels of genetic differentiation. 相似文献
5.
《Evolutionary Applications》2017,10(1):39-55
Climate changes in the Arctic are predicted to alter distributions of marine species. However, such changes are difficult to quantify because information on present species distribution and the genetic variation within species is lacking or poorly examined. Blue mussels, Mytilus spp., are ecosystem engineers in the coastal zone globally. To improve knowledge of distribution and genetic structure of the Mytilus edulis complex in the Arctic, we analyzed 81 SNPs in 534 Mytilus spp. individuals sampled at 13 sites to provide baseline data for distribution and genetic variation of Mytilus mussels in the European Arctic. Mytilus edulis was the most abundant species found with a clear genetic split between populations in Greenland and the Eastern Atlantic. Surprisingly, analyses revealed the presence of Mytilus trossulus in high Arctic NW Greenland (77°N) and Mytilus galloprovincialis or their hybrids in SW Greenland, Svalbard, and the Pechora Sea. Furthermore, a high degree of hybridization and introgression between species was observed. Our study highlights the importance of distinguishing between congener species, which can display local adaptation and suggests that information on dispersal routes and barriers is essential for accurate predictions of regional susceptibility to range expansions or invasions of boreal species in the Arctic. 相似文献
6.
S. Lapègue E. Harrang S. Heurtebise E. Flahauw C. Donnadieu P. Gayral M. Ballenghien L. Genestout L. Barbotte R. Mahla P. Haffray C. Klopp 《Molecular ecology resources》2014,14(4):820-830
Use of SNPs has been favoured due to their abundance in plant and animal genomes, accompanied by the falling cost and rising throughput capacity for detection and genotyping. Here, we present in vitro (obtained from targeted sequencing) and in silico discovery of SNPs, and the design of medium‐throughput genotyping arrays for two oyster species, the Pacific oyster, Crassostrea gigas, and European flat oyster, Ostrea edulis. Two sets of 384 SNP markers were designed for two Illumina GoldenGate arrays and genotyped on more than 1000 samples for each species. In each case, oyster samples were obtained from wild and selected populations and from three‐generation families segregating for traits of interest in aquaculture. The rate of successfully genotyped polymorphic SNPs was about 60% for each species. Effects of SNP origin and quality on genotyping success (Illumina functionality Score) were analysed and compared with other model and nonmodel species. Furthermore, a simulation was made based on a subset of the C. gigas SNP array with a minor allele frequency of 0.3 and typical crosses used in shellfish hatcheries. This simulation indicated that at least 150 markers were needed to perform an accurate parental assignment. Such panels might provide valuable tools to improve our understanding of the connectivity between wild (and selected) populations and could contribute to future selective breeding programmes. 相似文献
7.
Jörn Thomsen Isabel Casties Christian Pansch Arne Körtzinger Frank Melzner 《Global Change Biology》2013,19(4):1017-1027
Ocean acidification is expected to decrease calcification rates of bivalves. Nevertheless, in many coastal areas high pCO2 variability is encountered already today. Kiel Fjord (Western Baltic Sea) is a brackish (12–20 g kg?1) and CO2 enriched habitat, but the blue mussel Mytilus edulis dominates the benthic community. In a coupled field and laboratory study we examined the annual pCO2 variability in this habitat and the combined effects of elevated pCO2 and food availability on juvenile M. edulis growth and calcification. In the laboratory experiment, mussel growth and calcification were found to chiefly depend on food supply, with only minor impacts of pCO2 up to 3350 μatm. Kiel Fjord was characterized by strong seasonal pCO2 variability. During summer, maximal pCO2 values of 2500 μatm were observed at the surface and >3000 μatm at the bottom. However, the field growth experiment revealed seven times higher growth and calcification rates of M. edulis at a high pCO2 inner fjord field station (mean pCO2 ca. 1000 μatm) in comparison to a low pCO2 outer fjord station (ca. 600 μatm). In addition, mussels were able to out‐compete the barnacle Amphibalanus improvisus at the high pCO2 site. High mussel productivity at the inner fjord site was enabled by higher particulate organic carbon concentrations. Kiel Fjord is highly impacted by eutrophication, which causes bottom water hypoxia and consequently high seawater pCO2. At the same time, elevated nutrient concentrations increase the energy availability for filter feeding organisms such as mussels. Thus, M. edulis can dominate over a seemingly more acidification resistant species such as A. improvisus. We conclude that benthic stages of M. edulis tolerate high ambient pCO2 when food supply is abundant and that important habitat characteristics such as species interactions and energy availability need to be considered to predict species vulnerability to ocean acidification. 相似文献
8.
《Evolutionary Applications》2018,11(6):978-994
In the marine environment, understanding the biophysical mechanisms that drive variability in larval dispersal and population connectivity is essential for estimating the potential impacts of climate change on the resilience and genetic structure of populations. Species whose populations are small, isolated and discontinuous in distribution will differ fundamentally in their response and resilience to environmental stress, compared with species that are broadly distributed, abundant and frequently exchange conspecifics. Here, we use an individual‐based modelling approach, combined with a population genetics projection model, to consider the impacts of a warming climate on the population connectivity of two contrasting Antarctic fish species, Notothenia rossii and Champsocephalus gunnari. Focussing on the Scotia Sea region, sea surface temperatures are predicted to increase significantly by the end of the 21st century, resulting in reduced planktonic duration and increased egg and larval mortality. With shorter planktonic durations, the results of our study predict reduced dispersal of both species across the Scotia Sea, from Antarctic Peninsula sites to islands in the north and east, and increased dispersal among neighbouring sites, such as around the Antarctic Peninsula. Increased mortality modified the magnitude of population connectivity but had little effect on the overall patterns. Whilst the predicted changes in connectivity had little impact on the projected regional population genetic structure of N. rossii, which remained broadly genetically homogeneous within distances of ~1,500 km, the genetic isolation of C. gunnari populations in the northern Scotia Sea was predicted to increase with rising sea temperatures. Our study highlights the potential for increased isolation of island populations in a warming world, with implications for the resilience of populations and their ability to adapt to ongoing environmental change, a matter of high relevance to fisheries and ecosystem‐level management. 相似文献
9.
J. Simon H. Westerberg D. Righton N. B. Sjöberg M. Dorow 《Zeitschrift fur angewandte Ichthyologie》2018,34(3):659-668
Infection with the swim bladder nematode Anguillicola crassus has been hypothesised to threaten the spawning migration success of the endangered European eel (Anguilla anguilla). To examine this assumption, we compared the swimming behaviour of one Anguillicola crassus infested eel in the North Sea and three parasite‐free eels in the Baltic using data recovered from data storage tags attached to migrating silver eels. In both areas, eel activity was characterized by frequent diving behaviour throughout the water column during the night, with reduced activity during the day. Despite substantial damage of the swim bladder, the behaviour of the infested eel from the North Sea was within the same range of migrating and diving activity parameters as the three parasite‐free eels from the Baltic Sea. All eels had a similar frequency distribution of descent or ascent speeds and a similar average horizontal migration speed. The diving speeds and dive ranges exclude the possibility that the eels were in continuous hydrostatic equilibrium during their migrations and suggests therefore that the role of the swim bladder in vertical migration is likely to be more complex than currently thought. Our results suggest that eels infested by Anguillicola crassus are capable of diving in a similar manner to uninfested eels during the first stretch of their spawning migration. 相似文献
10.
Henry Murillo Pacheco Sherah L. Vanlaerhoven M. Ángeles Marcos García David W. Hunt 《Entomologia Experimentalis et Applicata》2018,166(4):277-288
Trophic interactions and environmental conditions determine the structure of food webs and the host expansion of parasitoids into novel insect hosts. In this study, we investigate plant–insect–parasitoid food web interactions, specifically the effect of trophic resources and environmental factors on the presence of the parasitoids expanding their host range after the invasion of Chrysodeixis chalcites (Esper) (Lepidoptera: Noctuidae). We also consider potential candidates for biological control of this non‐native pest. A survey of larval stages of Plusiinae (Lepidoptera: Noctuidae) and their larval parasitoids was conducted in field and vegetable greenhouse crops in 2009 and 2010 in various locations of Essex and Chatham‐Kent counties in Ontario, Canada. Twenty‐one plant–host insect–host parasitoid associations were observed among Trichoplusia ni (Hübner) (Lepidoptera: Noctuidae), C. chalcites, and larval parasitoids in three trophic levels of interaction. Chrysodeixis chalcites, an old‐world species that had just arrived in the region, was the most common in our samples. The larval parasitoids Campoletis sonorensis (Cameron) (Hymenoptera: Ichneumonidae), Cotesia vanessae (Reinhard), Cotesia sp., Microplitis alaskensis (Ashmead), and Meteorus rubens (Nees) (all Hymenoptera: Braconidae) expanded their host range into C. chalcites changing the structure of the food web. Copidosoma floridanum (Ashmead) (Hymenoptera: Encyrtidae) was the most common parasitoid of T. ni that was not found in the invasive species. Plant species, host abundance, and agro‐ecosystem were the most common predictors for the presence of the parasitoids expanding their host range into C. chalcites. Our results indicate that C. sonorensis, C. vanessae, and C. floridanum should be evaluated for their potential use in biological control of C. chalcites and T. ni. 相似文献
11.
Cascade J. B. Sorte Victoria E. Davidson Marcus C. Franklin Kylla M. Benes Meredith M. Doellman Ron J. Etter Robyn E. Hannigan Jane Lubchenco Bruce A. Menge 《Global Change Biology》2017,23(1):341-352
The earth is in the midst of a biodiversity crisis, and projections indicate continuing and accelerating rates of global changes. Future alterations in communities and ecosystems may be precipitated by changes in the abundance of strongly interacting species, whose disappearance can lead to profound changes in abundance of other species, including an increase in extinction rate for some. Nearshore coastal communities are often dependent on the habitat and food resources provided by foundational plant (e.g., kelp) and animal (e.g., shellfish) species. We quantified changes in the abundance of the blue mussel (Mytilus edulis), a foundation species known to influence diversity and productivity of intertidal habitats, over the past 40 years in the Gulf of Maine, USA, one of the fastest warming regions in the global ocean. Using consistent survey methods, we compared contemporary population sizes to historical data from sites spanning >400 km. The results of these comparisons showed that blue mussels have declined in the Gulf of Maine by >60% (range: 29–100%) at the site level since the earliest benchmarks in the 1970s. At the same time as mussels declined, community composition shifted: at the four sites with historical community data, the sessile community became increasingly algal dominated. Contemporary (2013–2014) surveys across 20 sites showed that sessile species richness was positively correlated to mussel abundance in mid to high intertidal zones. These results suggest that declines in a critical foundation species may have already impacted the intertidal community. To inform future conservation efforts, we provide a database of historical and contemporary baselines of mussel population abundance and dynamics in the Gulf of Maine. Our results underscore the importance of anticipating not only changes in diversity but also changes in the abundance and identity of component species, as strong interactors like foundation species have the potential to drive cascading community shifts. 相似文献
12.
Emma F. Young Mark Belchier Lorenz Hauser Gavin J. Horsburgh Michael P. Meredith Eugene J. Murphy Sonia Pascoal Jennifer Rock Niklas Tysklind Gary R. Carvalho 《Evolutionary Applications》2015,8(5):486-509
Understanding the key drivers of population connectivity in the marine environment is essential for the effective management of natural resources. Although several different approaches to evaluating connectivity have been used, they are rarely integrated quantitatively. Here, we use a ‘seascape genetics’ approach, by combining oceanographic modelling and microsatellite analyses, to understand the dominant influences on the population genetic structure of two Antarctic fishes with contrasting life histories, Champsocephalus gunnari and Notothenia rossii. The close accord between the model projections and empirical genetic structure demonstrated that passive dispersal during the planktonic early life stages is the dominant influence on patterns and extent of genetic structuring in both species. The shorter planktonic phase of C. gunnari restricts direct transport of larvae between distant populations, leading to stronger regional differentiation. By contrast, geographic distance did not affect differentiation in N. rossii, whose longer larval period promotes long‐distance dispersal. Interannual variability in oceanographic flows strongly influenced the projected genetic structure, suggesting that shifts in circulation patterns due to climate change are likely to impact future genetic connectivity and opportunities for local adaptation, resilience and recovery from perturbations. Further development of realistic climate models is required to fully assess such potential impacts. 相似文献
13.
《Evolutionary Applications》2018,11(3):298-311
Gaining new knowledge of the native distributions of species (phylogeography) is more and more difficult in a world affected by anthropogenic disturbance, in particular by species translocations. Increasingly, molecular markers are required to support decisions about the taxonomy of native vs. introduced species, and the existence of their hybrids, to answer phylogeographic questions. In many fields, including aquaculture, traceability and food security, taxonomic and phylogeographic knowledge is key to the successful management and conservation of biodiversity. The Pacific coast of Chile is one of the last regions without a clear and agreed understanding of the taxonomy and systematics of smooth‐shelled blue mussels of the genus Mytilus. A panel of 49 bi‐allelic single nucleotide polymorphisms (SNPs) was genotyped in 338 Mytilus individuals collected from nine Chilean and five reference populations. All analyses confirmed the hypothesis that the native Chilean blue mussel is genetically distinct from the reference species M. edulis, M. galloprovincialis and M. trossulus. These results support the hypothesis of a unique evolutionary history of the native Chilean blue mussel on the Pacific coast of South America. It is therefore concluded that the native blue mussel from Chile should be recognized as M. chilensis Hupé 1854. We confirmed a recent Mediterranean origin of introduced M. galloprovincialis on the coast of Chile. This knowledge advances the understanding of global phylogeography of blue mussels and their bioinvasions and harmonizes taxonomy in the context of aquaculture production, seafood traceability, labelling and trade. 相似文献
14.
Pierre De Wit Per R. Jonsson Ricardo T. Pereyra Marina Panova Carl Andr Kerstin Johannesson 《Evolutionary Applications》2020,13(5):974-990
Incorporating species' eco‐evolutionary responses to human‐caused disturbances remains a challenge in marine management efforts. A prerequisite is knowledge of geographic structure and scale of genetic diversity and connectivity—the so‐called seascape genetic patterns. The Baltic Sea is an excellent model system for studies linking seascape genetics with effects of anthropogenic stress. However, seascape genetic patterns in this area are only described for a few species and are completely unknown for invertebrate herbivores, which constitute a critical part of the ecosystem. This information is crucial for sustainable management, particularly under future scenarios of rapid environmental change. Here, we investigate the population genetic structure among 31 locations throughout the Baltic Sea, of which 45% were located in marine protected areas, in one of the most important herbivores of this region, the isopod crustacean Idotea balthica, using an array of 33,774 genome‐wide SNP markers derived from 2b‐RAD sequencing. In addition, we generate a biophysical connectivity matrix for I. balthica from a combination of oceanographic current models and estimated life history traits. We find population structure on scales of hundreds of kilometers across the Baltic Sea, where genomic patterns in most cases closely match biophysical connectivity, indicating passive transport with oceanographic currents as an important mean of dispersal in this species. We also find a reduced genetic diversity in terms of heterozygosity along the main salinity gradient of the Baltic Sea, suggesting periods of low population size. Our results provide crucial information for the management of a key ecosystem species under expected changes in temperature and salinity following global climate change in a marine coastal area. 相似文献
15.
Mit mutations that disrupt function of the mitochondrial electron transport chain can, inexplicably, prolong Caenorhabditis elegans lifespan. In this study we use a metabolomics approach to identify an ensemble of mitochondrial‐derived α‐ketoacids and α‐hydroxyacids that are produced by long‐lived Mit mutants but not by other long‐lived mutants or by short‐lived mitochondrial mutants. We show that accumulation of these compounds is dependent on concerted inhibition of three α‐ketoacid dehydrogenases that share dihydrolipoamide dehydrogenase (DLD) as a common subunit, a protein previously linked in humans with increased risk of Alzheimer's disease. When the expression of DLD in wild‐type animals was reduced using RNA interference we observed an unprecedented effect on lifespan – as RNAi dosage was increased lifespan was significantly shortened, but, at higher doses, it was significantly lengthened, suggesting that DLD plays a unique role in modulating length of life. Our findings provide novel insight into the origin of the Mit phenotype. 相似文献
16.
Javier Valverde Carolina da Silva Carvalho Pedro Jordano Mauro Galetti 《Biotropica》2021,53(1):286-295
Large mammalian herbivores play an important role in shaping the diversity of tropical forests by affecting the survival of seedlings and saplings beneath parent plants. The white‐lipped peccary (Tayassu pecari) accounts for the largest herbivore biomass that controls seed and seedling survival in Neotropical ecosystems. However, hunting and habitat loss has driven peccaries to local extinction for most of their original distribution, so it is likely that their absence will affect plant recruitment dynamics. We tested the effects of peccary local extinction on the density and spatial distribution of the hyperdominant palm Euterpe edulis by performing a fine‐scale characterization of its spatial recruitment in six forest sites in the Brazilian Atlantic forest. We compared the age structure and the spatial patterns of seedlings, saplings, and adults as well as the relationship between them. We found that while under the presence of peccaries there was a decrease in recruitment rates under adults, the local extinction of these large mammals led to a more clumped process of spatial recruitment. Despite such contrasting spatial patterns of recruitment dynamics, neither age structure nor the random spatial distribution of adults was affected by the presence or absence of peccaries, indicating that their early effects on these palm populations are mitigated as recruitment advances. Our findings highlight the role of large‐bodied forest‐dwelling herbivores in regulating the fine‐scale spatial recruitment of plants and advance our understanding on the effects of defaunation in tropical forests. Abstract in Portuguese is available with online material. 相似文献
17.
Miranda D. Redmond Neil S. Cobb Michael J. Clifford Nichole N. Barger 《Global Change Biology》2015,21(10):3685-3695
Recent droughts and increasing temperatures have resulted in extensive tree mortality across the globe. Understanding the environmental controls on tree regeneration following these drought events will allow for better predictions of how these ecosystems may shift under a warmer, drier climate. Within the widely distributed piñon–juniper woodlands of the southwestern USA, a multiyear drought in 2002–2004 resulted in extensive adult piñon mortality and shifted adult woodland composition to a juniper‐dominated, more savannah‐type ecosystem. Here, we used pre‐ (1998–2001) and 10‐year post‐ (2014) drought stand structure data of individually mapped trees at 42 sites to assess the effects of this drought on tree regeneration across a gradient of environmental stress. We found declines in piñon juvenile densities since the multiyear drought due to limited new recruitment and high (>50%) juvenile mortality. This is in contrast to juniper juvenile densities, which increased over this time period. Across the landscape, piñon recruitment was positively associated with live adult piñon densities and soil available water capacity, likely due to their respective effects on seed and water availability. Juvenile piñon survival was strongly facilitated by certain types of nurse trees and shrubs. These nurse plants also moderated the effects of environmental stress on piñon survival: Survival of interspace piñon juveniles was positively associated with soil available water capacity, whereas survival of nursed piñon juveniles was negatively associated with perennial grass cover. Thus, nurse plants had a greater facilitative effect on survival at sites with higher soil available water capacity and perennial grass cover. Notably, mean annual climatic water deficit and elevation were not associated with piñon recruitment or survival across the landscape. Our findings reveal a clear shift in successional trajectories toward a more juniper‐dominated woodland and highlight the importance of incorporating biotic interactions and soil properties into species distribution modeling approaches. 相似文献
18.
Manuel Vera Beln G. Pardo Asuncin Cao Romn Vilas Carlos Fernndez Andrs Blanco Alejandro P. Gutierrez Tim P. Bean Ross D. Houston Antonio Villalba Paulino Martínez 《Evolutionary Applications》2019,12(9):1781-1796
The European flat oyster (Ostrea edulis) is a highly appreciated mollusk with an important aquaculture production throughout the 20th century, in addition to playing an important role on coastal ecosystems. Overexploitation of natural beds, habitat degradation, introduction of non‐native species, and epidemic outbreaks have severely affected this important resource, particularly, the protozoan parasite Bonamia ostreae, which is the main concern affecting its production and conservation. In order to identify genomic regions and markers potentially associated with bonamiosis resistance, six oyster beds distributed throughout the European Atlantic coast were sampled. Three of them have been exposed to this parasite since the early 1980s and showed some degree of innate resistance (long‐term affected group, LTA), while the other three were free of B. ostreae at least until sampling date (naïve group, NV). A total of 14,065 SNPs were analyzed, including 37 markers from candidate genes and 14,028 from a medium‐density SNP array. Gene diversity was similar between LTA and NV groups suggesting no genetic erosion due to long‐term exposure to the parasite, and three population clusters were detected using the whole dataset. Tests for divergent selection between NV and LTA groups detected the presence of a very consistent set of 22 markers, located within a putative single genomic region, which suggests the presence of a major quantitative trait locus associated with B. ostreae resistance. Moreover, 324 outlier loci associated with factors other than bonamiosis were identified allowing fully discrimination of all the oyster beds. A practical tool which included the 84 highest discriminative markers for tracing O. edulis populations was developed and tested with empirical data. Results reported herein could assist the production of stocks with improved resistance to bonamiosis and facilitate the management of oyster beds for recovery production and ecosystem services provided by this species. 相似文献
19.
Jason V. Lombardi Darryl I. MacKenzie Michael E. Tewes Humberto L. Perotto‐Baldivieso Jos M. Mata Tyler A. Campbell 《Ecology and evolution》2020,10(11):4903-4917
Interspecific competition among carnivores has been linked to differences in behavior, morphology, and resource use. Insights into these interactions can enhance understanding of local ecological processes that can have impacts on the recovery of endangered species, such as the ocelot (Leopardus pardalis). Ocelots, bobcats (Lynx rufus), and coyotes (Canis latrans) share a small geographic range overlap from South Texas to south‐central Mexico but relationships among the three are poorly understood. From May 2011 to March 2018, we conducted a camera trap study to examine co‐occurrence patterns among ocelots, bobcats, and coyotes on the East Foundation's El Sauz Ranch in South Texas. We used a novel multiseason extension to multispecies occupancy models with ≥2 interacting species to conduct an exploratory analysis to examine interspecific interactions and examine the potential effects of patch‐level and landscape‐level metrics relative to the occurrence of these carnivores. We found strong evidence of seasonal mutual coexistence among all three species and observed a species‐specific seasonal trend in detection. Seasonal coexistence patterns were also explained by increasing distance from a high‐speed roadway. However, these results have important ecological implications for planning ocelot recovery in the rangelands of South Texas. This study suggests a coexistence among ocelots, bobcats, and coyotes under the environmental conditions on the El Sauz Ranch. Further research would provide a better understanding of the ecological mechanisms that facilitate coexistence within this community. As road networks in the region expand over the next few decades, large private working ranches will be needed to provide important habitat for ocelots and other carnivore species. 相似文献
20.
Lorna R. Teal Ralf van Hal Tobias van Kooten Piet Ruardij Adriaan D. Rijnsdorp 《Global Change Biology》2012,18(11):3291-3305
Climate change is currently one of the main driving forces behind changes in species distributions, and understanding the mechanisms that underpin macroecological patterns is necessary for a more predictive science. Warming sea water temperatures are expected to drive changes in ectothermic marine species ranges due to their thermal tolerance levels. Here, we develop a mechanistic tool to predict size‐ and season‐specific distributions based on the physiology of the species and the temperature and food conditions in the sea. The effects of climate conditions on physiological‐based habitat utilization was then examined for different size‐classes of two commercially important fish species in the North Sea, plaice, Pleuronectes platessa, and sole, Solea solea. The two species provide an attractive comparison as they differ in their physiology (e.g. preferred temperature range). Combining dynamic energy budget (DEB) models with the temperature and food conditions estimated by an ecosystem model (ERSEM), allowed spatial differences in potential growth (as a proxy for habitat quality) to be estimated for 2 years with contrasting temperature and food conditions. The resulting habitat quality maps were in broad agreement with observed ontogenetic and seasonal changes in distribution as well as with the recent changes in distribution which could be attributed to an increase in coastal temperatures. Our physiological‐based model provides a powerful tool to explore the effect of climate change on the spatio‐temporal fish dynamics, predict effects of local or broad‐scale environmental changes and provide a physiological basis for observed changes in species distributions. 相似文献