Decreased microbial diversity and <Emphasis Type="Italic">Lactobacillus</Emphasis> group in the intestine of geriatric giant pandas (<Emphasis Type="Italic">Ailuropoda melanoleuca</Emphasis>)

It has been established beyond doubt that giant panda genome lacks lignin-degrading related enzyme, gastrointestinal microbes may play a vital role in digestion of highly fibrous bamboo diet. However, there is not much information available about the intestinal bacteria composition in captive giant pandas with different ages. In this study, we compared the intestinal bacterial community of 12 captive giant pandas from three different age groups (subadults, adults, and geriatrics) through PCR-denaturing gradient gel electrophoresis (DGGE) and real-time PCR analysis. Results indicated that microbial diversity in the intestine of adults was significantly higher than that of the geriatrics (p < 0.05), but not significant compared to the subadults (p > 0.05). The predominant bands in DGGE patterns shared by the twelve pandas were related to Firmicutes and Proteobacteria. Additionally, in comparison to healthy individuals, antibiotic-treated animals showed partial microbial dysbiosis. Real-time PCR analyses confirmed a significantly higher abundance of the Lactobacillus in the fecal microbiota of adults (p < 0.05), while other bacterial groups and species detected did not significantly differ among the three age groups (p > 0.05). This study revealed that captive giant pandas with different ages showed different intestinal bacteria composition.     

Seasonal shifts in giant panda feeding behavior: relationships to bamboo plant part consumption

The giant panda (Ailuropoda melanoleuca) is classified as a carnivore, yet subsists on a diet comprised almost exclusively of bamboo. Wild and captive giant pandas use highly selective foraging behaviors for processing and consuming bamboo. These behaviors are for the first time quantified in captive giant pandas over a 5‐year period of time showing highly specific seasonal trends. Giant panda feeding behavior was recorded using live video observations of two giant pandas housed at the Memphis Zoo from November 2003 to June 2008. Leaf was the primary plant part consumed from June to December, whereas culm was consumed primarily from February to May, with both bears displaying similar seasonal shifts in plant part consumption. From May to June, leaf consumption increased significantly (P‐values<0.001); from June to August, leaf consumption remained high and stable. From December to March, leaf consumption decreased significantly (P‐values<0.001). Specific behaviors for bamboo leaf and culm consumption were also observed. Both bears formed wads of leaves before ingestion while feeding on leaf, but the male employed this feeding behavior more often than the female (54 and 33%, respectively). Both bears used similar culm‐stripping behavior (26 and 25%), used to remove the outer layer and isolate the pith for consumption. This study indicates that unique seasonal foraging behaviors observed in wild pandas are also apparent in captive animals in relation to plant part selectivity and feeding behaviors. Zoo Biol 29:470–483, 2010. © 2009 Wiley‐Liss, Inc.     

降低圈养大熊猫排粘液频率的措施初探

大熊猫(Ailuropoda melanoleuca)是中国特有的珍稀动物,在其整个消化道内膜上,都分布有丰富的粘液腺。在野外,这些粘液腺的分泌物包裹于大熊猫摄食的竹茎、竹叶和竹笋表面而排出体外;圈养条件下,常常见到这些分泌物积聚到一定数量而成团排出,这即被称为大熊猫的排粘液现象(王平     

圈养大熊猫野化培训期的生境选择特征

大熊猫(Ailuropoda melanoleuca)是我国特有的珍稀物种,也是世界上最濒危的野生动物之一。为了将人工繁育的部分大熊猫个体重引入其历史分布区或复壮野生种群,中国保护大熊猫研究中心从2003年开始进行圈养大熊猫的野外放归工作,通过野化培训以提高圈养大熊猫适应和选择野外环境的能力。对野化培训大熊猫"淘淘"的生境选择研究表明:该野化培训大熊猫幼仔经常活动于新笋密度较大的区域[生境与对照:(2.68±1.14)对(1.58±0.66)],却避开成竹密度过大[(9.91±2.51)对(12.18±4.68)]、竹子较高[(4.57±1.09) m对(4.98±0.66) m]以及枯死竹过多[(2.52±0.86)对(3.39±1.33)]的区域;喜欢活动于离水源[(1.59±0.67)对(2.19±0.87)]和隐蔽场所较近[(5.37±2.14) m对(8.35±7.76)m],以及距离乔木较远[(3.09±0.69) m对(2.70±0.42) m]和郁闭度较低[(1.85±0.57)对(2.10±0.47)]的区域(P < 0.05),新笋密度大小是该栖息地在整个野化培训期间是否被利用的最重要因素。该野化培训大熊猫幼仔保持着与带仔母兽相近的生境选择特征,对竹子环境的选择也与卧龙野生大熊猫相似,野化培训对该大熊猫幼仔产生了积极的作用。野化培训大熊猫幼仔形成的家域和核域面积分别为9.21 hm² 和1.93 hm²,占野化培训圈面积的51.95%和10.89%,其中家域面积仅有卧龙野生大熊猫的1.4%-2.4%,所以在以后的野化培训过程中需要采取增加野化培训圈中环境丰富度等方式,促进野化培训大熊猫形成较大的家域面积。     

育幼经历对圈养成年雌性大熊猫尿液皮质醇含量的影响

为研究育幼期不同的育幼方式对圈养成年雌性大熊猫Ailuropoda melanoleuca福利状况的影响情况,了解圈养育幼模式可能引发成年雌性大熊猫的应激问题,完善育幼期大熊猫的饲养管理和兽舍参数设计,提高育幼过程中圈养大熊猫福利状况,选择成都大熊猫繁育研究基地育幼期采取不同育幼方式管理的成年雌性大熊猫为研究对象,利用...     

野化培训大熊猫幼仔的食性转换

本文以2010—2020年15只母兽带仔野化培训的大熊猫幼仔为研究对象,基于红外视频监控系统观察和音频颈圈解译获得的行为资料、GPS颈圈跟踪定位采集的粪样数据,分析了野化培训大熊猫幼仔的行为发育进程和食性转换特征。结果表明：随着野化培训大熊猫幼仔的生长发育,与觅食和警戒相关的行为得到充分发育,且具有较强的时间关联性,包括食乳、爬行、走动、玩耍物品、爬树、咬玩竹子、饮水和采食竹子等。8～10月龄的大熊猫幼仔开始取食竹子,其发育性食性转换过程划分为3个阶段：食乳期(1～7月龄)、食母乳—食竹子转换期(8～28月龄)和食竹期(29～39月龄),其中转换期细分为关键期(8～18月龄)和过渡期(19～28月龄)。从统计检验来看,不同食性阶段间差异显著;过渡期的大熊猫幼仔可离开母兽独立生活,此阶段大熊猫幼仔食物组分比例与食竹期相比无显著差异。野化培训大熊猫幼仔的季节性食性转换规律与带仔母兽和野生大熊猫具有相似的格局,即春季主要取食竹笋,夏、秋季则以嫩竹茎和竹叶为食,冬季采食竹叶与竹茎。     

Impacts of temperature on giant panda habitat in the north Minshan Mountains

Understanding the impacts of meteorological factors on giant pandas is necessary for future conservation measures in response to global climate change. We integrated temperature data with three main habitat parameters (elevation, vegetation type, and bamboo species) to evaluate the influence of climate change on giant panda habitat in the northern Minshan Mountains using a habitat assessment model. Our study shows that temperature (relative importance = 25.1%) was the second most important variable influencing giant panda habitat excepting the elevation. There was a significant negative correlation between temperature and panda presence (ρ = −0.133, P < 0.05), and the temperature range preferred by giant pandas within the study area was 18–21°C, followed by 15–17°C and 22–24°C. The overall suitability of giant panda habitats will increase by 2.7%, however, it showed a opposite variation patterns between the eastern and northwestern region of the study area. Suitable and subsuitable habitats in the northwestern region of the study area, which is characterized by higher elevation and latitude, will increase by 18007.8 hm² (9.8% habitat suitability), while the eastern region will suffer a decrease of 9543.5 hm² (7.1% habitat suitability). Our results suggest that increasing areas of suitable giant panda habitat will support future giant panda expansion, and food shortage and insufficient living space will not arise as problems in the northwest Minshan Mountains, which means that giant pandas can adapt to climate change, and therefore may be resilient to climate change. Thus, for the safety and survival of giant pandas in the Baishuijiang Reserve, we propose strengthening the giant panda monitoring program in the west and improving the integrity of habitats to promote population dispersal with adjacent populations in the east.     

从野外大熊猫的粪便估计年龄及其种群年龄结构的研究

本文对野外大熊猫粪便中的竹秆咬节及切缘与竹叶残片量度和破碎状况的研究,并以此对已知年龄个体的牙齿切片和齿冠磨损程度进行验证,发现通过粪便分析,可将野外大熊猫种群,大体划分为4个年龄组。     

Synergistic effects of anthropogenic disturbances on giant pandas

Livestock grazing and the collection of bamboo shoots are the main threats to giant panda (Ailuropoda melanoleuca) habitat in the Liangshan Mountains in China. It is important to clarify the effect of these disturbances to the giant panda to formulate targeted management policies. Based on species distribution models and daily activity models, we investigated the effects of livestock grazing and bamboo shoot collection on giant pandas from May 2021 to July 2022. Our results indicated the giant panda's suitable habitat in the reserve covered 51.83 km² (15.02% of the reserve area). Grazing and bamboo shoot collection led to losses of 19.08 km² and 7.68 km² of suitable habitat, respectively. Together, the 2 activities resulted in a loss of 28.35 km² of suitable habitat, which was more than half of the area of panda habitat. The areas of suitable habitat for giant pandas significantly overlapped with the areas affected by both disturbances. Giant pandas did not show significant differences in daily activity rhythms under a single disturbance, but the daily activity rhythms of giant pandas differed when we compared the area combining the 2 disturbances with the undisturbed area. Our study reveals that the anthropogenic disturbances in the reserve have varying effects on the suitable habitat range and daily activity rhythm of giant pandas and evidence of a synergistic effect. Therefore, when formulating relevant conservation policies, it is important to fully evaluate the extent and characteristics of anthropogenic disturbances in shaping the population distribution and habitat preferences of the giant panda and other wildlife to enhance the efficacy of conservation management practices.     

The Microbial Community in the Feces of the Giant Panda (<Emphasis Type="Italic">Ailuropoda melanoleuca</Emphasis>) as Determined by PCR-TGGE Profiling and Clone Library Analysis

Despite having a typical carnivorous digestive tract, the giant panda has a diet consisting exclusively of bamboo, a low-efficiency food source. Given this paradox, we sought to investigate if the giant panda digestive tract is inhabited by organisms indicative of high cellulose diet or their gastrointestinal tract anatomy. The diversity and dynamics of the predominant bacteria in the fecal flora of two adult (male and female) and one young (male) giant panda reared in two different zoos over a 2-year period was studied using 16S rDNA-based approaches. The temperature gradient gel electrophoresis (TGGE) profiles of the 16S rDNA V3 region of the three individuals were highly similar. The structure of their fecal flora remained relatively stable over the 2-year period. Both the most predominant band in TGGE patterns shared by the three pandas and the biggest operational taxonomic unit (OTU) in the clone library were phylogenetically related to Escherichia coli. Gram-negative, facultative bacteria constituted almost 60% of the whole community in the clone library. All the OTUs were related to previously described phylotypes known to reside in the intestine or rumen. The results of our study indicate that the predominant bacterial populations in the intestine of the three pandas were markedly different from that of herbivores. The unbalanced intestinal community structure may play a role in the inefficient digestion of bamboo by the giant pandas.     

圈养大熊猫食谱组成与营养成分分析

为了探讨圈养大熊猫主食竹食谱组成及主要影响因素,并为圈养单位提供科学合理的食物营养配比和饲养管理建议。本研究通过对成都大熊猫繁育研究基地１０ 只成年大熊猫４ 年（２００９. ０３ －２０１３.０２）的饲养数据,３只成年大熊猫１ 年（２０１２. ０７ －２０１３. ０６）的觅食行为观察数据,以及投饲的３ 种竹笋和５ 种主食竹常规养分和总黄酮含量的统计分析。结果发现,基地圈养大熊猫偏好竹笋,喜食巴山木竹叶、白夹竹茎和苦竹茎,随机采食箬竹叶和刺竹茎;基地大熊猫根据投饲竹种类和季节的变化,形成了较为稳定的食谱组成;对投饲竹各部位成分比较分析发现,投饲竹养分含量的变化呈现出一定的规律性：其中粗蛋白、粗脂肪、蛋白质和能量比都以竹叶最高,竹枝次之,竹茎最低;干物质和粗纤维的含量则以竹茎最高,竹枝次之,竹叶最少;竹茎和竹枝呈现钙少磷多的现象,而竹叶则是钙多磷少;各投饲竹不同部位总黄酮含量以叶中最高,枝中其次,茎中最低。研究结果表明,圈养大熊猫主食竹食谱的选择遵循能量和营养学的规律,选择适口性强、营养价值高的食物假说。     

圈养大熊猫粘液排泄现象的观察

大熊猫(Ailuropodamelanoleuca)是中国特有的珍稀动物,它们以高纤维含量的竹子为主食,但却具有与食肉动物相似的消化系统结构,为适应高纤维的食物,它们又形成了与食竹相适应的消化生理特点。其整个消化道内膜上粘液腺丰富,在野外,这些粘液腺的分泌物包裹于大熊猫所摄食的竹茎、     

放牧对冶勒自然保护区大熊猫生境的影响

四川冶勒自然保护区周边村民的牲畜基本上都在保护区内放养。为研究放牧和大熊猫对竹类的利用及放牧强度与竹类的关系 ,利用Forageratio选择指数 ,Pearson相关分析和联列表独立性检验 ,对调查数据进行分析。结果表明 ,大熊猫活动区海拔为 2 870～ 390 0m ,并喜欢选择竹类盖度为 5 0 %～ 10 0 % ,竹类高度 2～ 3m ,竹类生长状况好的竹林。而放牧海拔为 2 70 0～ 4 0 0 0m ,放牧对竹类的盖度、高度、生长状况没有选择性 ,为随机利用。放牧海拔与大熊猫活动海拔无显著相关。大熊猫在放牧生境活动的频率较低 ;放牧生境中竹类的成竹平均密度和竹子平均密度都低于大熊猫活动生境 ,枯死竹比例高于大熊猫活动生境。放牧强度与竹类的有、无和竹类盖度是相关联的 ,大熊猫出现与否也与放牧活动相关联 (在 95 %的置信度 ,P <0 0 5 )。放牧强度强的生境没有大熊猫活动 ,竹子的盖度也较低。由于放牧活动对竹类的生长和盖度造成影响 ,从而影响大熊猫对放牧生境的利用 ,在保护区内应采取一定的措施控制放牧活动。     

气候变化对邛崃山系大熊猫主食竹和栖息地分布的影响

气候变化对生物多样性的影响,特别是珍稀濒危物种的影响是当前的研究热点。全球气候变化对大熊猫的影响一直受到广泛关注。根据野外调查的大熊猫活动痕迹点、竹类分布点和主食竹扩散距离数据,采用Maxent模型,利用植被、地形、气候等因素,在RCP8.5下分析了2050年和2070年邛崃山系大熊猫主食竹分布及栖息地变化趋势。结果显示:(1)未来大熊猫适宜生境及主食竹气候适宜区面积均有所减少,到2070年分别减少37.2%和4.7%;(2)未来主食竹分布范围总体向高海拔扩展,但面积持续减少,到2070年分布面积比当前减少8.3%;(3)大熊猫栖息地未来有向高海拔扩张的趋势,在低海拔地区退缩明显,到2070年较当前减少27.2%;但到2070年大熊猫栖息地面积加上非栖息地有主食竹分布的面积,较现有大熊猫栖息地面积大1.5%;(4)受气候变化影响较严重的区域是邛崃山系南部以及低海拔地区,其余区域所受影响相对较小;(5)未来需要加强对受气候变化影响严重区域的监测与保护,特别是邛崃山系中部的大熊猫集中分布区。     

大熊猫粪便宽径与咬节平均长度的关系

粪便咬节是大熊猫数量调查中最常用的指标。然而,大熊猫在主食竹叶的季节有时在粪便中未留下咬节而使数量调查难以进行。为此,本文对大熊猫粪便宽径与咬节平均长度的关系进行了初步探讨。结果表明,大熊猫粪便宽径呈正态分布,同一个体的含咬节粪便与全由竹叶组成的粪便在宽径上无显著差异。大熊猫咬节平均长度与粪便宽径存在显著的回归关系。在不考虑年龄的情况下,粪便咬节平均长度与粪便宽径的回归方程为:Y=0.38X十14.40。成体和亚成体组的粪便咬节平均长度与粪便宽径的回归方程为:Y=0.22 X+22.79。年龄对大熊猫粪便咬节平均长度与粪便宽径的回归关系有显著影响。     

汶川地震对大熊猫栖息地的影响与恢复对策

 大熊猫是生物多样性保护的旗舰种, 保护大熊猫及其栖息地是保护生物多样性和生态系统功能完整性与稳定性的重要保障体现。汶川地震灾区位于大熊猫重点分布区岷山-邛崃山, 地震及其次生灾害导致该区27个大熊猫自然保护区不同程度受损, 8.3%的大熊猫栖息地因地震而被破坏。地震及其次生灾害对大熊猫栖息地的影响主要表现在: 1) 地震埋没和砸毁大熊猫赖以生存的主食竹, 地震可能诱发主食竹开花, 威胁到大熊猫的健康和食物安全; 2) 地震及其诱发的土壤和山石运动显著影响森林的动态特征, 森林大面积丧失或质量下降; 3) 地震改变大熊猫栖息地生境特征, 大熊猫个体交流的廊道阻断, 形成“生殖孤岛”, 遗传多样性降低, 栖息地破碎化进程加快。应对震后大熊猫栖息地恢复的主要对策有: 1) 重新评估震后大熊猫栖息地质量, 并重新规划现有大熊猫保护区群的布局; 2) 应用地理信息系统、遥感及数学模型等手段与野外实地实证研究相结合的方法, 全面查清震后大熊猫栖息地主食竹资源状况及分布规律并及时监测其动态, 复壮更新大熊猫主食竹; 3) 利用天然植被自然恢复和人工重建等措施恢复因地震而退化或丧失的大熊猫栖息地。     

野生大熊猫现状、面临的挑战及展望

截至2003年底,我国野生大熊猫种群数量达1596只,分布在陕西、四川和甘肃3省的45个县境内,总栖息地面积达2304991hm^2。与第2次大熊猫调查相比,野生大熊猫生存状况已得到改善,分布范围扩大、栖息地面积增加、种群数量进一步增长。本文在第3次大熊猫调查的基础上,就野生大熊猫种群及栖息地现状进行了分析,指出未来保护大熊猫所面临的3个方面的挑战,即来自物种自身生物学特性的挑战、栖息地破碎化及隔离小种群未来命运的挑战以及大熊猫保护与社区经济发展需求相冲突的挑战。作者还就我国大熊猫保护前景进行了展望,即自然保护区数量将进一步增加,栖息地状况将进一步改善;种群数量在总体保持稳定的基础上将逐步增长,但局部小种群灭绝风险将加剧;圈养种群将形成能自我维持的种群,圈养个体通过培训将逐步放归到隔离野生小种群中以改变其命运。     

海拔对大熊猫主食竹结构、营养及大熊猫季节性分布的影响

大熊猫主要采食竹子,因此主食竹对大熊猫生存具有重要的作用。在秦岭的佛坪地区的大熊猫主要取食巴山木竹以及秦岭箭竹。本文研究了海拔对这两种竹林的结构与营养含量的影响以及海拔与大熊猫季节性分布的关系。结果表明：（1）海拔对竹林基径、株高有显著影响（p0.05）;整齐度、均匀度、基径和株高分布的偏度值和峰度值均随海拔变化而变化。（2）海拔对主食竹营养含量的显著影响随季节而变化（春季粗蛋白和总糖p=0.02;夏季粗纤维p=0.01;秋季粗蛋白p=0.04、粗纤维p=0.04和总糖p0.01）。每个竹种在叶、枝、杆三个部位间的营养均有显著性差异（p0.05）。（3）海拔对竹林结构及营养的显著影响决定了大熊猫对主食竹的取食策略,夏季在高海拔活动,其余季节在低海拔活动。本文的研究结果对理解海拔、主食竹结构、营养以及大熊猫迁移活动之间的关系有重要作用,为圈养大熊猫的饲料配比提供理论依据,也为野外大熊猫的保护和规范保护区内部的人类活动提供科学支撑。     

Gut microbiota in reintroduction of giant panda

Reintroduction is a key approach in the conservation of endangered species. In recent decades, many reintroduction projects have been conducted for conservation purposes, but the rate of success has been low. Given the important role of gut microbiota in health and diseases, we questioned whether gut microbiota would play a crucial role in giant panda's wild‐training process. The wild procedure is when captive‐born babies live with their mothers in a wilderness enclosure and learn wilderness survival skills from their mothers. During the wild‐training process, the baby pandas undergo wilderness survival tests and regular physical examinations. Based on their performance through these tests, the top subjects (age 2–3 years old) are released into the wild while the others are translocated to captivity. After release, we tracked one released panda (Zhangxiang) and collected its fecal samples for 5 months (January 16, 2013 to March 29 2014). Here, we analyzed the Illumina HiSeq sequencing data (V4 region of 16S rRNA gene) from captive pandas (n = 24), wild‐training baby pandas (n = 8) of which 6 were released and 2 were unreleased, wild‐training mother pandas (n = 8), one released panda (Zhangxiang), and wild giant pandas (n = 18). Our results showed that the gut microbiota of wild‐training pandas is significantly different from that of wild pandas but similar to that of captive ones. The gut microbiota of the released panda Zhangxiang gradually changed to become similar to those of wild pandas after release. In addition, we identified several bacteria that were enriched in the released baby pandas before release, compared with the unreleased baby pandas. These bacteria include several known gut‐health related beneficial taxa such as Roseburia, Coprococcus, Sutterella, Dorea, and Ruminococcus. Therefore, our results suggest that certain members of the gut microbiota may be important in panda reintroduction.     

Genome-wide survey and analysis of microsatellites in giant panda (Ailuropoda melanoleuca), with a focus on the applications of a novel microsatellite marker system

Background

The giant panda (Ailuropoda melanoleuca) is a critically endangered species endemic to China. Microsatellites have been preferred as the most popular molecular markers and proven effective in estimating population size, paternity test, genetic diversity for the critically endangered species. The availability of the giant panda complete genome sequences provided the opportunity to carry out genome-wide scans for all types of microsatellites markers, which now opens the way for the analysis and development of microsatellites in giant panda.

Results

By screening the whole genome sequence of giant panda in silico mining, we identified microsatellites in the genome of giant panda and analyzed their frequency and distribution in different genomic regions. Based on our search criteria, a repertoire of 855,058 SSRs was detected, with mono-nucleotides being the most abundant. SSRs were found in all genomic regions and were more abundant in non-coding regions than coding regions. A total of 160 primer pairs were designed to screen for polymorphic microsatellites using the selected tetranucleotide microsatellite sequences. The 51 novel polymorphic tetranucleotide microsatellite loci were discovered based on genotyping blood DNA from 22 captive giant pandas in this study. Finally, a total of 15 markers, which showed good polymorphism, stability, and repetition in faecal samples, were used to establish the novel microsatellite marker system for giant panda. Meanwhile, a genotyping database for Chengdu captive giant pandas (n = 57) were set up using this standardized system. What’s more, a universal individual identification method was established and the genetic diversity were analysed in this study as the applications of this marker system.

Conclusion

The microsatellite abundance and diversity were characterized in giant panda genomes. A total of 154,677 tetranucleotide microsatellites were identified and 15 of them were discovered as the polymorphic and stable loci. The individual identification method and the genetic diversity analysis method in this study provided adequate material for the future study of giant panda.

Electronic supplementary material

The online version of this article (doi:10.1186/s12864-015-1268-z) contains supplementary material, which is available to authorized users.