Phylogenetic analysis of some ll-diaminopimelic acid-containing coryneform bacteria from human skin: description of Propionibacterium innocuum sp. nov.

A new species, Propionibacterium innocuum, is proposed to accommodate strains of coryneform bacteria from human skin with phenotypic characters similar to those of the classical propionibacteria but differing in exhibiting primarily aerobic respiration and possessing a unique cell wall composition in which LL-diaminopimelic acid and arabinose occur together. The partial 16S rRNA sequence confirms an affinity with the genus Pro-pionibacterium and indicates that the species represents a distinct line within the genus. The type strain of Propionibacterium innocuum is NCTC 11082.     

Paramoeba aparasomata n. sp., a symbiont-free species,and its relative Paramoeba karteshi n. sp. (Amoebozoa,Dactylopodida)

Two brackish water amoebae have been isolated and studied from the benthic biotopes of the Chupa Inlet (Kandalaksha Bay, northwestern Russia). Both strains can be identified as new species of the genus Paramoeba (Amoebozoa, Dactylopodida, Paramoebidae) based on light microscopical characters, structure of microscales on the cell surface and molecular evidence based on the analyses of two genes, nuclear SSU rRNA and mitochondrial cytochrome c oxidase subunit 1 (COI). Paramoeba aparasomata n. sp. is of particular interest because this amoeba is permanently lacking a symbiotic Perkinsela-like organism (PLO) present in other species of Paramoeba and Neoparamoeba. The results obtained show that scaly dactylopodial amoebae lacking PLO are not necessarily members of Korotnevella. In particular, we suggest that Korotnevella nivo Smirnov, 1997, with microscales very similar to those of Paramoeba eilhardi and the species studied here in structure, may be in fact a member of Paramoeba. Molecular data on K. nivo have to be obtained and analysed to test this hypothesis. Based on our new results we emend the diagnosis of the genus Paramoeba to make it more fit to the current phylogenetic conception.     

Alexandrium pacificum Litaker sp. nov (Group IV): Resting cyst distribution and toxin profile of vegetative cells in Bizerte Lagoon (Tunisia,Southern Mediterranean Sea)

A high spatial resolution sampling of Alexandrium pacificum cysts, along with sediment characteristics (% H₂O, % organic matter (OM), granulometry), vegetative cell abundance and environmental factors were investigated at 123 study stations in Bizerte Lagoon (Tunisia). Morphological examination and ribotyping of cells obtained from a culture called ABZ1 obtained from a cyst isolated in lagoon sediment confirmed that the species was A. pacificum. The toxin profile from the ABZ1 culture harvested during exponential growth phase was simple and composed of the N-sulfocarbamoyl toxins C1 (9.82 pg toxin cell⁻¹), the GTX6 (3.26 pg toxin cell⁻¹) and the carbamoyl toxin Neo-STX (0.38 pg toxin cell⁻¹). The latter represented only 2.8% of the total toxins in this strain.High abundance of A. pacificum cysts correlated with enhanced percentages of water and organic matter in the sediment. In addition, sediment fractions of less than 63 μm were examined as a favorable potential seedbed for initiation of future blooms and outbreaks of A. pacificum in the lagoon. A significant difference in the cyst distribution pattern was recorded among the lagoon's different zones, with the higher cyst abundance occurring in the inner waters. Also, no correlation due to the specific hydrodynamics of the lagoon was observed in the spatial distribution of A. pacificum cysts and vegetative cells.     

Fine structure of the mouthparts of Diostrombus politus and Proutista moesta (Hemiptera: Derbidae)

Insect mouthparts are important sensory and feeding structures, morphological studies of this organ can provide additional data for phylogenetic studies. The planthopper superfamily Fulgoroidea is among the dominant groups of phytophagous insects, however, the mouthparts ultrastructure of this superfamily remains unsatisfactorily studied. This study investigates the ultrastructure of the mouthparts of two species in the family Derbidae (Hemiptera: Fulgoroidea), Diostrombus politus Uhler and Proutista moesta (Westwood), using a scanning electron microscope. The results show that these two derbids are of a typical piercing-sucking type found in Hemiptera. They consist of a cone-shaped labrum, a three-segmented labium and a stylet fascicle with two interlocked maxillary stylets incompletely wrapped by two mandibular stylets. The arrangement of the sensilla on the labial tip differ slightly between the two derbid species, and the subapical labial sensilla are likely different among genera in the family Derbidae.     

Comptoniaster adamsi nov. sp. (Echinodermata, Asteroidea) from the middle Cretaceous of Texas and its phylogenetic position

Comptoniaster adamsi nov. sp. (Asteroidea, Valvatida, Goniasteridae) is described from the middle Cretaceous (Cenomanian-Turonian) Britton Formation of northcentral Texas, USA. The new species provides the focus for an exploratory cladistic analysis of Mesozoic asteroids of the Comptoniaster-Tylasteria Group sensu G. Breton. The systematics of Mesozoic goniasterids has relied heavily on the morphology of marginal ossicles, which generally are the best-preserved elements of the skeleton. Unfortunately, marginal ossicular data are scanty for most species because ossicles tend to be morphologically simple yet varied even within individuals, and few even partially articulated specimens are available to provide more comprehensive information. Further, both plesiomorphy and homeomorphy have been important. Because of limited available data, phylogenetic reconstruction here is preliminary. Nevertheless, a number of taxon groupings recognized in the literature are recovered, and stratigraphic distribution provides some support for results. Data unfortunately are particularly incomplete for species of Comptoniaster, the focus of the study. Comptoniaster adamsi nov. sp. clustered with three other species assigned to the genus, including the type, all Cretaceous in age. Jurassic species of Comptoniaster are more widely distributed in the analysis, perhaps reflecting an early stage in diversification or perhaps suggesting the need for species assignment reassessment, but also reflecting the limited available data.     

Thecal tabulation,body scale morphology and phylogeny of Heterocapsa philippinensis sp. nov. (Peridiniales,Dinophyceae) from the Philippines

The thecal tabulation and body scale structure of the marine armoured dinoflagellate Heterocapsa, isolated from Philippines, were examined using LM, SEM and TEM, and its phylogenetic position was inferred from ITS and LSU rDNA sequences. Cells were ovoid and the plate tabulation (Po, cp, X, 5′, 3a, 7′′, 6c, 5s, 5′′′, 2′′′′) was consistent with most Heterocapsa species. The second anterior intercalary plate (2a) had a circular pattern with a thick marginal border free of pores. The nucleus was longitudinally elongated and curved, and located at the dorsal side of the cell. Discoid lobes of brownish chloroplast were peripherally distributed, and a pyrenoid was positioned at the centre. The triradiate body scales, measuring 250–300 nm in diameter, consisted of a roundish basal plate with six radiating ridges, nine peripheral uprights/spines, and three radiating spines. These components were identical to those of H. pseudotriquetra and H. steinii, except for the roundish outline of basal plate. Molecular phylogeny showed that the species clustered with H. pseudotriquetra and H. steinii. This species was differentiated from all other Heterocapsa species in the sausage-shaped nucleus and circular pattern on the 2a plate. This study proposed a novel species Heterocapsa philippinensis sp. nov. for the isolate.     

Phylogenetic utility and comparative morphology of the composite scale brushes in male phycitine moths (Lepidoptera, Pyralidae)

Male pyralid moths in the subfamily of Phycitinae are known to possess composite scale brush structures associated with the 8th abdominal sternite, but the histology and the structural morphology of these organs have not been adequately explored. As such, the phylogenetic utility of these structures is unknown. We examine the pre-genitalic abdominal histology of male Dioryctria reniculelloides (Pyralidae: Phycitinae) associated with the composite scale brushes, as well as structural morphology within the genus Dioryctria and two closely related genera. The composite scale brushes are composed of fused scales. The musculature associated with the base of sternum 8 shows considerable modification compared to previously described Lepidoptera. Complex glandular tissue was also found associated with the scale brush structures, suggesting secretory function. Phylogenetic utility of ultrastructure and gross morphology was examined for major Dioryctria species groups. Many characters were homoplasious, but several supported the monophyly of the genus, as well as some internal relationships. In conclusion, the combination of ultrastructural, gross morphological and histological characters can be a rich source of information for elucidating a range of evolutionary relationships within the subfamily.     

Phylogenetic position of the parasitoid nanoflagellate Pirsonia inferred from nuclear-encoded small subunit ribosomal DNA and a description of Pseudopirsonia n. gen. and Pseudopirsonia mucosa (Drebes) comb. nov

Sequences of the nuclear encoded small subunit (SSU) rRNA were determined for Pirsonia diadema, P. guinardiae, P. punctigerae, P. verrucosa, P. mucosa and three newly isolated strains 99-1, 99-2, 99-S. Based on phylogenetic analysis all Pirsonia strains, except P. mucosa, clustered together in one clade, most closely related to Hyphochytrium catenoides within the group of stramenopiles. However, P. mucosa was most closely related to Cercomonas sp. SIC 7235 and Heteromita globosa and belongs to the heterogenic group of Cercozoa. In addition to the SSU rDNA sequences, P. mucosa differs from the stramenopile Pirsonia species in some characteristics and was therefore redescribed in this paper as Pseudopirsonia mucosa. The three newly isolated strains 99-1, 99-2, and 99-S differed by 28 bp in their SSU rDNA sequences from their closest neighbour P. diadema and only 1 to 3 bp among themselves. These base differences and a host range similar to P. formosa were sufficient to assign them as new strains of P. formosa.     

Pinjata ruminata gen. et sp. n.—A New Member of Centrohelid Family Yogsothothidae (Haptista: Centroplasthelida) from the Brackish River

A new genus and species of centrohelid heliozoan Pinjata ruminata from the Tuzlukkol’ River (Orenburg Region of Russia) and Gor?koe Lake (Chelyabinsk Region of Russia) is studied with light‐ and electron microscopy. Pinjata ruminata has two types of plate scales, partially running up the sides of the axopodia. Inner plate scales (3.2–4.9 × 1.5–2.6 μm) are flat, ovate‐oblong and have a broad axial thickening and a thin electron‐dense border. Outer plate scales (4.2–6.7 × 1.5–3.0 μm) are concave, elongated, of irregular shape, often curved, and broadened towards one end. Roundish depressions are forming two rows on both sides of the narrow axial thickening. The cells are attached to the substratum. Molecular phylogenetic analysis based on the SSU rDNA robustly placed P. ruminata in the family Yogsothothidae. This position is confirmed with the presence of five panacanthocystid increase regions. The morphology of the new genus is in a good accordance with diagnosis of the family. The status of a genus “Heteroraphidiophrys” is discussed. Other potential findings of Pinjata from literature are analyzed. Pinjata represents the third lineage of centrohelids, characterized with the presence of only tangentially oriented plate scales. The halophilic nature of Yogsothothidae is suggested.     

Polyspora huongiana sp. nov. (Theaceae) from Vietnam and notes on related species

A new species of Polyspora Sweet (Theaceae) endemic to the Bidoup‐Nui Ba National Park, Lam Dong Province, Vietnam, is described and illustrated: Polyspora huongiana Orel, Curry & Luu. The newly described species has variably shaped, coriaceous, narrowly elliptical leaves, terminal, pedicellate, mostly solitary, rather fleshy, dark pink to red flowers, with petals in two whorls; a columnar, seamlessly fused style with 3–5 apical lobes; persistent bracteoles; and a superior 3–4 (–5) chambered ovary. The morphological evidence supports taxonomic placement in the genus Polyspora. A new name is provided and new combinations are made for some other species in the region.     

Description of two cultivated and two uncultivated new Salinibacter species,one named following the rules of the bacteriological code: Salinibacter grassmerensis sp. nov.; and three named following the rules of the SeqCode: Salinibacter pepae sp. nov., Salinibacter abyssi sp. nov., and Salinibacter pampae sp. nov.

Current -omics methods allow the collection of a large amount of information that helps in describing the microbial diversity in nature. Here, and as a result of a culturomic approach that rendered the collection of thousands of isolates from 5 different hypersaline sites (in Spain, USA and New Zealand), we obtained 21 strains that represent two new Salinibacter species. For these species we propose the names Salinibacter pepae sp. nov. and Salinibacter grassmerensis sp. nov. (showing average nucleotide identity (ANI) values < 95.09% and 87.08% with Sal. ruber M31^T, respectively). Metabolomics revealed species-specific discriminative profiles. Sal. ruber strains were distinguished by a higher percentage of polyunsaturated fatty acids and specific N-functionalized fatty acids; and Sal. altiplanensis was distinguished by an increased number of glycosylated molecules. Based on sequence characteristics and inferred phenotype of metagenome-assembled genomes (MAGs), we describe two new members of the genus Salinibacter. These species dominated in different sites and always coexisted with Sal. ruber and Sal. pepae. Based on the MAGs from three Argentinian lakes in the Pampa region of Argentina and the MAG of the Romanian lake Fără Fund, we describe the species Salinibacter pampae sp. nov. and Salinibacter abyssi sp. nov. respectively (showing ANI values 90.94% and 91.48% with Sal. ruber M31^T, respectively). Sal. grassmerensis sp. nov. name was formed according to the rules of the International Code for Nomenclature of Prokaryotes (ICNP), and Sal. pepae, Sal. pampae sp. nov. and Sal. abyssi sp. nov. are proposed following the rules of the newly published Code of Nomenclature of Prokaryotes Described from Sequence Data (SeqCode). This work constitutes an example on how classification under ICNP and SeqCode can coexist, and how the official naming a cultivated organism for which the deposit in public repositories is difficult finds an intermediate solution.     

Foonchewia guangdongensis gen. et sp. nov. (Rubioideae: Rubiaceae) and its systematic position inferred from chloroplast sequences and morphology

Abstract The new species, Foonchewia guangdongensis R. J. Wang & H. Z. Wen and the new monotypic genus Foonchewia R. J. Wang (Rubioideae, Rubiaceae), are described from eastern Guangdong, China. It is characterized by its subshrub habit, pentamerous and heterostylous flowers, 2‐1ocular ovary with many ovules, and apically dehiscent capsules with numerous angulated seeds. Phylogenetic analysis of four chloroplast DNA regions (rbcL, rps16, ndhF, and atpB‐rbcL) revealed that the new genus is nested in the Spermacoceae alliance and is sister to Dunnia. Morphological comparison between these two genera indicated that they had few synapomorphies; it was therefore inappropriate to classify the new genus in the existing tribe Dunnieae, and a new tribe, Foonchewieae R. J. Wang, is accordingly proposed.     

Raphidiophrys heterophryoidea sp. nov. (Centrohelida: Raphidiophryidae), the first heliozoan species with a combination of siliceous and organic skeletal elements

Centrohelid heliozoans form a monophyletic group with uncertain affinities to other groups of protists. Except for a number of naked species, they have either siliceous scales or organic spicules covering the cell. According to the phylogenetic analysis of the 18S rDNA gene, it is hypothesized that scales are the ancestral form of cell coverings, while spicules are derived structures. The present paper describes a new species of centrohelids, Raphidiophrys heterophryoidea, isolated from the inner lakes of Valamo Island (North-Western Russia). This species has tangential scales, consisting of two plates, connected with radial, sometimes branched septa. Raphidiophrys heterophryoidea also has radially oriented spindle-shaped spicules. The organic nature of spicules and the siliceous nature of scales were verified by energy-dispersive X-ray microanalysis. Such a combination of organic and siliceous skeletal elements in one heliozoan is novel for any heliozoan species. The complex bipartite structure of scales suggested placing this new species in the genus Raphidiophrys. Consequently, the diagnoses of the genus Raphidiophrys and the family Raphidiophryidae were amended taking into account the optional presence of spicules. Raphidiophrys heterophryoidea presumably represents a stage of shift from scales to spicules, which, according to the molecular phylogenetic data, occurred at least twice in centrohelid evolution.     

Polyporus phyllostachydis sp. nov. with notes on other rhizophilic species of Polyporus (Basidiomycota,Polyporaceae)

Polyporus phyllostachydis is described and illustrated as a new species. This species is characterized by its occurrence on bamboo roots, the small and centrally stipitate basidiocarps, the white pileus, usually becoming darker from the center at maturity, and the cylindrical stipe with a distinct crust. Morphological characters of the present species were compared with those of P. cryptopus and P. rhizophilus, other rhizophilic species of the genus. Polyporus cryptopus and P. rhizophilus are morphologically distinct by contextual texture, basidiospores, and hyphae, and possibly represent two distinct species. Contribution no. 205, Laboratory of Plant Parasitic Mycology, Graduate School of Life and Environmental Sciences, University of Tsukuba, Japan     

Paradoxapseudes shimojiensis sp. nov. (Crustacea: Tanaidacea: Apseudidae) from a submarine limestone cave in Japan,with notes on its chelipedal morphology and sexual system

ABSTRACT

We describe Paradoxapseudes shimojiensis sp. nov. from a submarine limestone cave at Shimoji-jima Island, Ryukyu Islands, southwestern Japan. This species resembles five species (P. basibidens, P. bassoprofundo, P. bermudeus, P. edgari, and P. heroae, among 17 congeners) that bear a long pleotelson, but differs from them in having (i) a naked antennal article 1, (ii) the maxillipedal basis with one inner distal plumose seta, (iii) the chelipedal basis with one dorsodistal and one ventro-subproximal simple setae, (iv) the pereopod-1 basis with four dorsal simple setae longer than the width of the pereopod-1 basis, but without ventrodistal spiniform setae, (v) the pereopod-1 merus with three mid-inner ventral simple setae, and (vi) the pleopodal protopod with two inner plumose setae. We determined partial nucleotide sequences for the cytochrome c oxidase subunit I (COI) and 18S rRNA (18S) genes in P. shimojiensis for future use in DNA barcoding and phylogeny. Paradoxapseudes shimojiensis has serial ridges on the inner surfaces of the left and right chelipedal bases that quite resemble the stridulatory organs in harvestmen (Opiliones); by analogy, we speculate that these ridges may be stridulatory sound-producing organs. Two specimens had both a fully-developed marsupium and genital cone, suggesting that P. shimojiensis is simultaneously hermaphroditic.

http://zoobank.org/urn:lsid:zoobank.org:pub:391C3C0F-8845-4496-A27D-936384F9E59D