Mutagenicity of nitrofuran derivatives, including furylfuramide, a food preservative.

The effects of sodium azide (NaN₃) in combination with diethyl sulfate (dES) or N-methyl-N′-nitrosourea (MNH) on mutation frequency in barley were studied. It was found that sodium azide produced high frequencies of chlorophyll mutations when used alone and has a synergistic effect on mutation yields following MNH treatments. However, the mutation frequency was decreased whe azide was applied following dES treatment of seeds. The mutagenic efficiency of azide was found to be high, possibly because of low “physiological” damage. The synergistic increase in mutation yields by MNH and azide treatment indicates that azide has unusual promise as a mutagen for both practical and research applications.     

Synthesis, immobilization, and solid-state NMR of new phosphine linkers with long alkyl chains

Monodentate and chelating phosphines with long alkyl chains, incorporating ethoxy- or chlorosilane functions for immobilizations, have been synthesized and fully characterized. The new compounds (EtO)₃Si(CH₂)_xPPh₂, Cl₂Si(CH₂CH₂PPh₂)₂, and (EtO)₂Si[(CH₂)_xPPh₂]₂ (x = 7, 11) could be prepared in high yields from cheap starting materials, and they have been characterized by multinuclear NMR spectroscopy and X-ray crystallography. The phosphines have been immobilized on silica in a well-defined manner, and the modified silicas have been studied by ³¹P and ²⁹Si solid-state NMR of the dry materials and of the suspensions.     

Factors affecting resolution, band width, number of theoretical plates, and apparent diffusion coefficients in polyacrylamide gel electrophoresis

A systematic study of several variables affecting band width and resolution in polyacrylamide gel electrophoresis (PAGE) has been carried out. This makes it possible to determine resolution, number of theoretical plates, and an apparent diffusion coefficient in PAGE. Measurement of band position yields a linear relationship between logarithm of electrophoretic mobility and gel concentration when other variables are held constant. Similarly, measurement of band width yields a linear relationship between the logarithm of the dispersion coefficient (D′) and gel concentration. This makes it possible to extrapolate to 0 gel concentration and to obtain as estimate of a free dispersion coefficient (D′₀) which is usually one or two orders of magnitude greater than the free diffusion coefficient (D_20,w). D′ depends on protein concentration (which is a function of sample load and time), on ionic strength (I), and on duration of electrophoresis (dependent on field strength which in turn depends on ionic strength and current). Since these several variables introduce nonlinear and interrelated correction factors, extrapolation to “infinite ionic strength,” “zero concentration,” and “infinite time” becomes difficult although it is potentially feasible at both the experimental and the theoretical level, and thus it may be possible to determine diffusion coefficients in PAGE on microgram amounts of material without the need for preliminary purification. Alternatively, PAGE in a nonsieving, anticonvectant gel at high ionic strength and for long duration may be able to provide an estimate of D_20,w. The results also support the validity of previously developed approximations for the relationship between band width and gel concentration, and for the relationship between band dispersion and electrophoretic mobility.     

Diphosphopyridine nucleotide-linked D-lactate dehydrogenases from the horseshoe crab, Limulus polyphemus and the seaworm, Nereis virens. I. Physical and chemical properties

d-lactate dehydrogenase has been purified from horseshoe crab (Limulus polyphemus) skeletal muscle and the seaworm (Nereis virens). The purified Limulus dehydrogenase was shown to be a dimer, with a molecular weight of approximately 70 000. Sephadex gel filtration and equilibrium sedimentation yield molecular weights of about 80 000 and 70 000 respectively. Acid dissociation yields a molecular weight species of about 35 000. The native enzyme has an s^o₂₀^w of 3.95. Extrapolation of para-hydroxymercuribenzoate inhibition curves to 100% inhibition corresponds to two molecules of para-hydroxymercuribenzoate bound per molecule of enzyme. Studies on the stoichiometric binding of reduced coenzyme show two molecules bound per molecule of enzyme. The number of tryptic peptides has been found to be one-half that expected from the amino acid composition. The electrophoretic pattern of isoenzymic forms can be best interpreted as suggesting that the enzyme is dimeric. In vitro high salt, freeze-thaw hybridizations of the isolated Limulus muscle isoenzymes yield the electrophoretic pattern predicted by a dimeric structure.The physical properties ot Nereis lactate dehydrogenase have been found to be similar to those for the Limulus muscle lactate dehydrogenase.     

Development of an in situ procedure to evaluate the reticulo-rumen morphology of sheep selected for divergent methane emissions

Published studies have shown that methane yield (g CH₄/kg dry matter) from sheep is positively correlated with the size (volume and surface area) of the reticulo-rumen (RR) and the weight of its contents. However, the relationship between CH₄ yield and RR shape has not been investigated. In this work, shape analysis has been performed on a data set of computerised tomography (CT) scans of the RR from sheep having high and low CH₄ yields (n=20 and n=17, respectively). The three-dimensional geometries of the RRs were reconstructed from segmented scan data and split into three anatomical regions. An iterative fitting technique combining radial basis functions and principal component (PC) fitting was used to create a set of consistent landmarks which were then used as variables in a PC analysis to identify shape variation within the data. Significant size differences were detected for regions corresponding to the dorsal and ventral compartments between sheep with high and low CH₄ yields. When the analysis was repeated after scaling the geometries to remove the effect of size, there was no significant shape variation correlating with CH₄ yield. The results have demonstrated the feasibility of CT-based computational shape determination for studying the morphological characteristics of the RR and indicate that size, but not shape correlates with CH₄ yield in sheep.     

Effect of mercuric ion on the growth, photosynthesis, and nitrogenase activity of Anabaena inaequalis.

Maintenance energy expenditures were mesured for five rumen bacteria, Selenomonas ruminantium, Butyrivibrio fibrisolvens, Bacteroides ruminicola, Megasphaera elsdenii, and Streptococcus bovis, by using a complex medium with glucose as the carbon source. Large differences (as high as 8.5-fold) in maintenance energy expenditures were seen among these bacteria. The suggestion is made that maintenance requirements could be a significant determinant of bacterial competition in the rumen. Theoretical maximum growth yields, calculated from double reciprocal plots of yield versus dilution rate, were compared to theoretical Y_ATP^max values in order to estimate minimum molar adenosine 5′-triphosphate yields from glucose for each bacterium. Results showed that relative yield among the bacteria was growth rate dependent. At high dilution rates, both S. ruminantium and S. bovis produced lactate as their principal fermentation product. At lower dilution rates very little lactate was formed and growth yields increased. Acetate and ethanol were the predominant fermentation products of S. bovis at low dilution rates. Other workers have shown that S. ruminantium produces acetate and propionate at low growth rates.     

1H, 13C and 199Hg NMR characteristics of new amine-mercuric chloride complexes

Reduction of some N-alkylimines has been achieved with NaBH₄ to give the corresponding secondary amines with high yields (85–95%). These amines were characterized on the bases of their ¹H and ¹³C NMR spectra. The reaction of these amines with mercuric chloride to afford the corresponding complexes was found to occur through a weak dative bond between the nitrogen lone pair of electrons and the mercury atom to form HgCl₂L₂ complexes. The ¹H, ¹³C and ¹⁹⁹Hg NMR chemical shifts have been obtained as well as ¹J(¹³CH) and ²J(¹³CH) coupling constants. Labelling with nitrogen-15 revealed that there is a weak coupling between the nitrogen and the ¹⁹⁹Hg.     

Synthesis and mass spectra of esters of branched chain fatty acids

The Wittig reaction between alkylidene triphenylphosphoranes [R — CH = P(C₆H₅)₃, where R varied from H to n — C₁₇H₃₅] and methyl 12-oxooctadecanoate or methyl 10-oxohexadecanoate in dimethylformamide (DMF) has been employed in the synthesis of a partial homologous series of esters of branched chain fatty acids in high yields. The effect of various ratios of reactants in both DMF and dimethylsulfoxide (DMSO) was investigated. Purification from triphenylphosphine oxide was readily accomplished by chromatography on a column of silicic acid-Celite impregnated with silver nitrate.     

Synthesis,X-ray diffraction analysis,quantum chemical studies and α-amylase inhibition of probenecid derived S-alkylphthalimide-oxadiazole-benzenesulfonamide hybrids

Sulphonamide and 1,3,4-oxadiazole moieties are present as integral structural parts of many drugs and pharmaceuticals. Taking into account the significance of these moieties, we herein present the synthesis, single-crystal X-ray analysis, DFT studies, and α-amylase inhibition of probenecid derived two S-alkylphthalimide-oxadiazole-benzenesulfonamide hybrids. The synthesis has been accomplished in high yields. The final structures of both hybrids have been established completely with the help of different spectro-analytical techniques, including NMR, FTIR, HR-MS, and single-crystal X-ray diffraction analyses. In an effort to confirm the experimental findings, versatile quantum mechanical calculations and Hirshfeld Surface analysis have been performed. α-Amylase inhibition assay has been executed to investigate the enzyme inhibitory potential of both hybrids. The low IC₅₀ value (76.92 ± 0.19 μg/mL) of hybrid 2 shows the good α-amylase inhibition potential of the respective compound. Ultimately, the binding affinities and features of the two hybrids are elucidated utilising a molecular docking technique against the α-amylase enzyme.     

A Convenient Method for the Synthesis of (Prop-2-Ynyloxy)Benzene Derivatives via Reaction with Propargyl Bromide,Their Optimization,Scope and Biological Evaluation

A highly convenient method has been developed for the synthesis of (prop-2-ynyloxy) benzene and its derivatives. Differently substituted phenol and aniline derivatives were allowed to react with propargyl bromide in the presence of K₂CO₃ base and acetone as solvent. The compounds were synthesized in good yields (53–85%). Low cost, high yields and easy availability of compounds helped in the synthesis. Electron withdrawing groups favor the formation of stable phenoxide ion thus in turn favors the formation of product while electron donating groups do not favor the reaction. Phenol derivatives gave good yields as compared to that of aniline. As aprotic polar solvents favor S_N2 type reactions so acetone provided best solvation for the reactions. K₂CO₃ was proved to be good for the synthesis. Antibacterial, Antiurease and NO scavenging activity of synthesized compounds were also examined. 4-bromo-2-chloro-1-(prop-2-ynyloxy)benzene 2a was found most active compound against urease enzyme with a percentage inhibition of 82.00±0.09 at 100 µg/mL with IC₅₀ value of 60.2. 2-bromo-4-methyl-1-(prop-2-ynyloxy)benzene 2d was found potent antibacterial against Bacillus subtillus showing excellent inhibitory action with percentage inhibition of 55.67±0.26 at 100 µg/ml wih IC₅₀ value of 79.9. Based on results, it can be concluded that some of the synthesized compounds may have potential antiurease and antibacterial effects against several harmful substances.     

Assessing the Soil Carbon,Biomass Production,and Nitrous Oxide Emission Impact of Corn Stover Management for Bioenergy Feedstock Production Using DAYCENT

Harvesting crop residue needs to be managed to protect agroecosystem health and productivity. DAYCENT, a process-based modeling tool, may be suited to accommodate region-specific factors and provide regional predictions for a broad array of agroecosystem impacts associated with corn stover harvest. Grain yield, soil C, and N₂O emission data collected at Corn Stover Regional Partnership experimental sites were used to test DAYCENT performance modeling the impacts of corn stover removal. DAYCENT estimations of stover yields were correlated and reasonably accurate (adjusted r ²?=?0.53, slope?=?1.18, p?<<?0.001, intercept?=?0.36, p?=?0.11). Measured and simulated average grain yields across sites did not differ as a function of residue removal, but the model tended to underestimate average measured grain yields. Modeled and measured soil organic carbon (SOC) change for all sites were correlated (adjusted r ²?=?0.54, p?<<?0.001), but DAYCENT overestimated SOC loss with conventional tillage. Simulated and measured SOC change did not vary by residue removal rate. DAYCENT simulated annual N₂O flux more accurately at low rates (≤2-kg N₂O-N ha^?1 year^?1) but underestimated when emission rates were >3-kg N₂O-N ha^?1 year^?1. Overall, DAYCENT performed well at simulating stover yields and low N₂O emission rates, reasonably well when simulating the effects of management practices on average grain yields and SOC change, and poorly when estimating high N₂O emissions. These biases should be considered when DAYCENT is used as a decision support tool for recommending sustainable corn stover removal practices to advance bioenergy industry based on corn stover feedstock material.     

Synthesis, characterization, and cytotoxicities of platinum(II) complexes bearing pyridinecarboxaldimines containing bulky aromatic groups

Condensation of 2-pyridinecarboxaldehyde with several primary amines containing bulky aryl groups gave the corresponding pyridinecarboxaldimines (N-N′). Addition of these ligands to [PtCl₂(coe)]₂ (coe = cis-cyclooctene) gave complexes of the type cis-PtCl₂(N-N′) in moderate yields. The platinum complexes have been examined for their potential cytotoxicities against OV2008 (human ovarian carcinoma) and the analogous cisplatin-resistant cell line C13.     

Design,synthesis, antiviral and cytostatic evaluation of novel isoxazolidine nucleotide analogues with a carbamoyl linker

5-Arylcarbamoyl-2-methylisoxazolidin-3-yl-3-phosphonates have been synthesised from N-methyl-C-diethoxyphosphorylnitrone and N-arylacrylamides in good yields. cis- and trans-isoxazolidine phosphonates obtained herein were evaluated for activity against a broad range of DNA and RNA viruses. None of the compounds were endowed with antiviral activity at subtoxic concentrations. Isoxazolidines having phenyl substituted with halogen (Ar = 2-F-C₆H₄; 3-Br-C₆H₄; and 4-Br-C₆H₄) have been found to inhibit proliferation of L1210, CEM as well as HeLa cells with IC₅₀ in the 100–170 μM range.     

Hypermethylation and higher stability of a plant (Eleusin coracana) tRNA

Total tRNA isolated from four-day-old ragi (Eleusin coracana) seedlings has been shown to be highly methylated. Each tRNA molecule on average contains two 2′-O-ribose methylated nucleosides. The high molar yields of 1-methyladenosine (1.6%) indicate that nearly a third of all the tRNA molecules contains more than one residue of 1-methyladenosine. Thermal denaturation studies with total tRNA show that the hypermethylated ragi tRNA melts slower that the yeast tRNA which is less methylated but otherwise has similar base composition. Ragi tRNA is also less susceptible to ribonucleases A, T₂ and T₂.     

Microwave-assisted synthesis,molecular docking and antitubercular activity of 1,2,3,4-tetrahydropyrimidine-5-carbonitrile derivatives

Based on bioisosteric similarities with isoniazid, a series of 1,2,3,4-tetrahydropyrimidine-5-carbonitrile derivatives has been designed. The target compounds have been synthesized by multicomponent reaction which involves one-pot organic reactions using ethylcyanoacetate, urea/thiourea and arylaldehydes in presence of ethanolic K₂CO₃. Two methodologies, conventional and microwave-assisted, have been adopted for the synthesis. The later strategy gave high yields in less than 10 min as compared to long hours using the former approach. Molecular docking of the target compounds into the enzyme Mycobacterium tuberculosis enoyl reductase (InhA) revealed important structural information on the plausible binding interactions. Major binding interactions were found to be of dispersion type (residues Tyr158, Ile215, Met103 and Met199) and a hydrogen bond with Tyr158. Binding poses of the all the compounds were energetically favorable and showed good interactions with the active site residues. Few selected compounds were also evaluated for antitubercular activity in vitro against drug-sensitive M. tuberculosis H37Rv strain and clinically isolated S, H, R and E resistant M. tuberculosis by luciferase reporter phage (LRP) assay method. Some compounds displayed promising antimycobacterial activity comparable or less than the standard drugs isoniazid and rifampicin.     

Mechanism of the enzymatic cleavage of the 9β,19-cyclopropane ring of cycloeucalenol

Incubation of cycloeucalenol with microsomes of Zea mays embryos in ²H₂O yields obtusifoliol-[19-²H]. Only one ²H atom is incorporated into obtusifoliol during the enzymatic reaction. This has been demonstrated using NMR spectroscopy by correlation of the enzymatically obtained product with ²HCl isomerization products of cycloeucalenol.     

The mechanistic aspects in hydroxylation reactions catalyzed by fluorinated porphyrins of manganese and iron: Role of aqueous phosphate

The role of aqueous phosphate in the selective hydroxylation of cyclohexane to cyclohexanol (60-68% yields) and cyclohexene to 2-cyclohexene-1-ol (98% yield) has been discussed. Fluorinated porphyrins of manganese and iron were used as catalysts in acetonitrile with aqueous-K₂HPO₄ and t-BuOOH as co-catalyst and oxidant, respectively. The generation of the oxo-manganese reactive intermediate was identified by ¹H, ¹⁹F NMR, EPR, UV-Vis and mass spectral studies. The formation of phosphate adduct of the oxo-manganese reactive intermediates has been proposed on the basis of high binding constant of dipotassium hydrogen phosphate with the catalyst.     

Non-crystallographic symmetry of crystal of neutral phospholipase A2 fromAgkistrodon halys Pallas

Agkistrodotoxin, a neutral phospholipase A₂ with high presynaptic neurotoxicity from the venom ofAgkistrodon halys Pallas, has been crystallized by hanging drop vapor diffusion method. The crystal belongs to P2₁ space group with the cell dimensionsa = 10.836 nm,b = 8.486nm,c = 7.082nm, β = 109.87°, showing C2 pseudo-symmetry. Diffraction data to 0.26 nm resolution have been collected on a Siemens X-200B area detector. C2 pseudo symmetry suggests that there exists a non-crystallographic two-fold axis parallel to crystallographicb axis. Selfrotation function calculation with different integrated radius and resolution ranges using the program POLARRFN yields four stable high peaks corresponding to three more non-crystallographic two-fold axis and one special non-crystallographic symmetry. The molecules in the asymmetric unit are suggested to be arranged in a manner ofdimer of dimers” by inference.     

(R)-1-Arylethanols from aryl iodides through a two-step one-pot enantioselective chemoenzymatic process

(R)-1-Arylethanols have been prepared in high to excellent overall yields through a two-step one-pot process that involves the palladium-catalyzed conversion of aryl iodides into the corresponding acetophenones, in the presence of acetic anhydride, EtN(i-Pr)₂, LiCl, and Pd₂(dba)₃ followed by an enantioselective reduction step catalyzed by the alcohol dehydrogenase enzyme from Lactobacillus brevis.     

Internal CO(2) Supply during Photosynthesis of Sun and Shade Grown CAM Plants in Relation to Photoinhibition

Leaves of Kalanchoë pinnata were exposed in the dark to air (allowing the fixation of CO₂ into malic acid) or 2% O₂, 0% CO₂ (preventing malic acid accumulation). They were then exposed to bright light in the presence or absence of external CO₂ and light dependent inhibition of photosynthetic properties assessed by changes in 77 K fluorescence from photosystem II (PSII), light response curves and quantum yields of O₂ exchange, rates of electron transport from H₂O through Q_B (secondary electron acceptor from the PSII reaction center) in isolated thylakoids, and numbers of functional PSII centers in intact leaf discs. Sun leaves of K. pinnata experienced greater photoinhibition when exposed to high light in the absence of CO₂ if malic acid accumulation had been prevented during the previous dark period. Shade leaves experienced a high degree of photoinhibition when exposed to high light regardless of whether malic acid had been allowed to accumulate in the previous dark period or not. Quantum yields were depressed to a greater degree than was 77 K fluorescence from PSII following photoinhibition.