Water-energy dynamics, climate, and prediction of woody plant species richness: an interim general model

Predictable geographic patterns in the distribution of species richness, especially the latitudinal gradient, are intriguing because they suggest that if we knew what the controlling factors were we could predict species richness where empirical data is lacking (e.g. tropics). Based on analyses of the macro-scale distribution of woody plant species richness in Southern Africa, one controlling factor appears to be climate-based water-energy dynamics. Using the regression models of climate's relationship to species richness in Southern Africa, I was able to describe an Interim General Model (IGM) and to predict first-order macro-scale geographic variations in woody plant species richness for the continent of Africa, as well as elsewhere in the world—exemplified using South America, the United States and China.
In all cases, the geographic pattern of variation in species richness is in accord with geographic variations in vegetation (visual comparison with vegetation maps) and net primary productivity. What validation was possible (Africa and U.S.A.) suggests that the IGM provides 'reasonable' estimates for actual woody plant species richness where species richness is in relative equilibrium with climate. Areas of over- or under-prediction support the contention of earlier workers that edaphic, topographic, historical, and dispersal factors need to be considered in a more complete explanation for spatio-temporal variations in species richness.
In addition to providing a means for systematically estimating woody plant species richness where present-day empirical data is lacking, the Interim General Model may prove useful for modelling the effects of climate change (past/future) on species richness (and, by association, the vegetation).     

Patterns of plant diversity in Africa south of the Sahara and their implications for conservation management

Plant species richness and range-size rarity in Africa south of the Sahara is concentrated in centres of plant diversity and endemism. Distribution patterns of plants mapped in the Distributiones Plantarum Africanum series and selected taxonomic monographs are analysed using the computer programme WORLDMAP. The plants are divided into four groups: herbaceous geophytes, mesophytic herbs, light-demanding shrubs and woody genera. Each group has peaks of species richness and range-size rarity at locations different to the other groups. Herbaceous geophytes and mesophytic herbs have their peaks of species richness and range-size rarity in the same location, the western Cape for geophytes and the Crystal Mountain for mesophytic herbs, whereas light-demanding shrubs and woody genera have peaks in different places. The results are discussed in relation to possible factors determining species richness and endemism and their likely conservation significance.     

Relative importance of water, energy, and heterogeneity in determining regional pteridophyte and seed plant richness in China

Environmental variables, such as ambient energy, water availability, and environmental heterogeneity have been frequently proposed to account for species diversity gradients. How taxon-specific functional traits define large-scale richness gradients is a fundamental issue in understanding spatial patterns of species diversity, but has not been well documented. Using a large dataset on the regional flora from China, we examine the contrast spatial patterns and environmental determinants between pteridophytes and seed plants which differ in dispersal capacity and environmental requirements. Pteridophyte richness shows more pronounced spatial variation and stronger environmental associations than seed plant richness. Water availability generally accounts for more spatial variance in species richness of pteridophytes and seed plants than energy and heterogeneity do, especially for pteridophytes which have high dependence on moist and shady environments. Thus, pteridophyte richness is disproportionally affected by water-related variables; this in turn results in a higher proportion of pteridophytes in regional vascular plant floras (pteridophyte proportion) in wet regions. Most of the variance in seed plant richness, pteridophyte richness, and pteridophyte proportion explained by energy is included in variation that water and heterogeneity account for, indicating the redundancy of energy in the study extent. However, heterogeneity is more important for determining seed plant distributions. Pteridophyte and seed plant richness is strongly correlated, even after the environmental effects have been removed, implying functional linkages between them. Our study highlights the importance of incorporating biological traits of different taxonomic groups into the studies of macroecology and global change biology.     

Patterns of diversity and range size of selected plant groups along an elevational transect in the Bolivian Andes

Patterns of point, -, and -diversity, and of an index of range size were studied for Acanthaceae, Araceae, Bromeliaceae, Melastomataceae, Palmae, and Pteridophyta in 204 vegetation plots of 400 m² along an elevational gradient in humid montane forest at 220–3950 m in central Bolivia. Zonal forest point-diversity (mean species number per plot) and -diversity (extrapolated total species number) showed either hump-shaped curves or constant values from lowlands to mid-elevations, followed by a steep decline. These patterns correspond to the hypothesis of maximum diversity at intermediate levels of productivity, while for pteridophytes and epiphytic Bromeliaceae they also fitt a null-model of random distribution within bounded geographical ranges. The ratio of point to -diversity was surprisingly constant across study groups and elevation with values of 0.2–0.4. Range size index (mean inverse range size of all species recorded at a given elevation) either increased with elevation, showed hump-shaped patterns, or remained roughly constant. Non-zonal habitats (ravines, ridge-tops, rock faces, roadsides, pastures) contributed significantly to overall species number for terrestrial herbs and shrubs of Bromeliaceae, Melastomataceae, and Pteridophyta, but not for Acanthaceae, Araceae, and epiphytic taxa. With few exceptions, endemism was most pronounced in zonal forests. These results imply that conservation measures should focus on zonal forests in a few large reserves at low and mid-elevations and in many smaller reserves at higher elevations.     

中条山中段木本植物群落植物种多样性分析

采用样方法取样,依据重要值指标运用双向指示种分析(TWINSPAN)法,将山西中条山中段植被群系分成16个群丛。应用丰富度指数（R₁、R₂）、Simpson指数（λ）,Shannon-Weiner指数(H′)和均匀度指数(E₁、E₅)研究了16个群丛的植物种多样性。结果表明：群系植物种多样性指数的大小受立地生境和人为活动的综合影响;森林群落的植物种多样性指数明显高于灌丛群落;群落植物种多样性在空间上的差异不仅决定于物种丰富度指数,更与各物种间的均匀度指数密切相关;进而影响不同层次的物种多样性对群落总体物种多样性的贡献。     

Quantitative metrics of overlaps in Grinnellian niches: advances and possible drawbacks

Aim Studies of environmental niche shift/niche conservatism that are based on species distribution modelling require a quantification of niche purity and potential overlap. Although various metrics have been proposed for this task, no comparisons of their performance are available yet that express the linearity of range shifts and error‐proneness. Herein, we assess the performance of six niche overlap metrics using three sister pairs of plethodontid salamanders as well as artificial species to test for linearity of overlap curves, impacts of varying potential distribution sizes and study area sizes. Location North America, artificial environments. Methods Species distribution models for the salamanders were performed with Maxent , and artificial species were created in the R environment. Potential distributions of species with varying range sizes and extents of the study area were compared using the Bray–Curtis distance BC, Schoener's D, two different modifications of the Hellinger distance I_mod, I_cor, Pianka's O and Horn's R. Niche overlaps in ecological space were compared using linear discriminant analyses based on principal components. Results Simulations of niche overlaps revealed strong variations in the performance of the niche overlap metrics. In artificial species, BC and D performed best, followed by O, R and I_cor, but the modified Hellinger distance I_mod showed a nonlinear slope and a truncated range. Furthermore, the simulations suggest that, in proportionally small potential distributions on large grids, an inclusion of a high proportion of grid cells with low occurrence probabilities representing background noise may bias assessments of niche overlaps. Main conclusions Both the salamander examples and simulations suggest that Schoener's D and the Bray–Curtis distance BC are best suited to compute niche overlaps from potential distributions derived from species distribution models. However, like all analysed metrics, both D and BC are seriously affected by the inclusion of high numbers of grid cells where the species are probably absent, i.e. with low occurrence probabilities. Therefore, pre‐processing to eliminate background noise in the potential distribution grids is highly recommended.     

滇西北地区种子植物地理分布及区系分化

以大尺度的物种分布信息为基础,对滇西北地区种子植物物种多样性的地理分布格局及其与植物区系分化之间的关系进行分析.结果表明:(1)滇西北地区的种子植物物种多样性从南到北呈递增趋势;(2)无论是在属的水平上,还是在科的水平上,植物区系分化强度从南到北均呈单调递增格局;(3)区系分化强度较大的区域主要集中在地形复杂的北部地区;(4)物种多样性随着区系分化强度的增强而增加;(5)物种多样性地理分布格局的形成可能与滇西北地区的地质历史、地形以及由此引起的植物区系分化有关.     

The geography and ecology of plant speciation: range overlap and niche divergence in sister species

A goal of evolutionary biology is to understand the roles of geography and ecology in speciation. The recent shared ancestry of sister species can leave a major imprint on their geographical and ecological attributes, possibly revealing processes involved in speciation. We examined how ecological similarity, range overlap and range asymmetry are related to time since divergence of 71 sister species pairs in the California Floristic Province (CFP). We found that plants exhibit strikingly different age-range correlation patterns from those found for animals; the latter broadly support allopatric speciation as the primary mode of speciation. By contrast, plant sisters in the CFP were sympatric in 80% of cases and range sizes of sisters differed by a mean of 10-fold. Range overlap and range asymmetry were greatest in younger sisters. These results suggest that speciation mechanisms broadly grouped under ‘budding’ speciation, in which a larger ranged progenitor gives rise to a smaller ranged derivative species, are probably common. The ecological and reproductive similarity of sisters was significantly greater than that of sister–non-sister congeners for every trait assessed. However, shifts in at least one trait were present in 93% of the sister pairs; habitat and soil shifts were especially common. Ecological divergence did not increase with range overlap contrary to expectations under character displacement in sympatry. Our results suggest that vicariant speciation is more ubiquitous in animals than plants, perhaps owing to the sensitivity of plants to fine-scale environmental heterogeneity. Despite high levels of range overlap, ecological shifts in the process of budding speciation may result in low rates of fine-scale spatial co-occurrence. These results have implications for ecological studies of trait evolution and community assembly; despite high levels of sympatry, sister taxa and potentially other close relatives, may be missing from local communities.     

Concurrent niche and neutral processes in the competition-colonization model of species coexistence

The importance of neutral dynamics is contentiously debated in the ecological literature. This debate focuses on neutral theory's assumption of fitness equivalency among individuals, which conflicts with stabilizing fitness that promotes coexistence through niche differentiation. I take advantage of competition-colonization trade-offs between species of aquatic micro-organisms (protozoans and rotifers) to show that equalizing and stabilizing mechanisms can operate simultaneously. Competition trials between species with similar colonization abilities were less likely to result in competitive exclusion than for species further apart. While the stabilizing mechanism (colonization differences) facilitates coexistence at large spatial scales, species with similar colonization abilities also exhibited local coexistence probably due to fitness similarities allowing weak stabilizing mechanisms to operate. These results suggest that neutral- and niche-based mechanisms of coexistence can simultaneously operate at differing temporal and spatial scales, and such a spatially explicit view of coexistence may be one way to reconcile niche and neutral dynamics.     

Mosses in Ohio wetlands respond to indices of disturbance and vascular plant integrity

We examined the relationships between an index of wetland habitat quality and disturbance (ORAM score) and an index of vascular plant integrity (VIBI-FQ score) with moss species richness and a moss quality assessment index (MQAI) in 45 wetlands in three vegetation types in Ohio, USA. Species richness of mosses and MQAI were positively associated with ORAM and VIBI-FQ scores. VIBI-FQ score was a better predictor of both moss species richness and MQAI than was either ORAM score or vegetation type. This result was consistent with the strict microhabitat requirements for many moss species, which may be better assessed by VIBI-FQ than ORAM. Probability curves as a function of VIBI-FQ score were then generated for presence of groups of moss species having the same degree of fidelity to substrate and plant communities relative to other species in the moss flora (coefficients of conservatism, CCs). Species having an intermediate- or high degree of fidelity to substrate and plant communities (i.e., species with CC ≥ 5) had a 50% probability of presence (P₅₀) and 90% probability of presence (P₉₀) in wetlands with intermediate- and high VIBI-FQ scores, respectively. Although moss species richness, probability of presence of species based on CC, and MQAI may reflect wetland habitat quality, the 95% confidence intervals around P₅₀ and P₉₀ values may be too wide for regulatory use. Moss species richness, MQAI, and presence of groups of mosses may be more useful for evaluating moss habitat quality in wetlands than a set of “indicator species.”     

Importance of clonal plants and plant species diversity in the Northeast China Transect

In plant communities, the internal (genet-level) control mechanisms on a spatio-temporal scale of clonal plants impose strong constraints on spatial pattern as well as on competitive relations and, thus, species coexistence. Therefore, the presence of clonal species within a plant community affects spatio-temporal dynamics and plant species diversity. We examined the distribution of plants with different clonal growth forms in the Northeast China Transect (NECT) and correlated plant species diversity with the importance of clonal plants, and the importance of phalanx and guerilla clonal plants. Phalanx clonal plants were more abundant in western communities where the altitude was higher and both the soil nitrogen contents and precipitation were relatively low. Whereas guerilla clonal plants were more abundant in the middle of the NECT where the precipitation, mean annual temperature and photosynthetically active radiation were relatively high. In the relatively productive temperate typical steppe, plant species diversity was negatively correlated with the importance of phalanx clonal plants and positively correlated with the importance of guerilla clonal plants. In relatively unproductive temperate desert steppe, plant species diversity was positively correlated with the importance of both phalanx and guerilla clonal plants.     

Comparison of landscape diversity in forests of the upper Rhine and the middle Loire floodplains (France)

Traditional measures of biotic indices (, , ) from phytosociological relevés are used to compare diversity at three scale-levels in the upper Rhine valley (Alsace, northeastern region) and the middle Loire (Bourgogne, central region), France. Both study areas included a tributary. The Ill, which is the Rhine tributary in this sector, has no forest communities in common with the main river because of opposite hydrological and edaphic characteristics. This is not the case in the Loire valley, in which the fluvial characteristics are close to those of its tributary, the Allier.Nearly all forest communities (12/14) were shown to be species-rich, due to the role of natural disturbances. Species richness peaks in late-successional forests of the Rhine valley (for example, up to 50 woody species in Querco-Ulmetum). Sixty per cent of the forest-communities are comon to the two floodplains, which explains why 85% of the families, 65% of the genera and 55% of the species are in common. Compared to the Loire valley, the Rhine valleys shows higher biotic diversity. This was related first to its geographical situation, and second to higher landscape heterogeneity. Human disturbance through river management is responsible for changes in species composition as shown by floristic comparison of flooded and unflooded sites. Insularity of natural forests among man-made landscapes is involved in species diversity. In order to preserve the natural diversity of such rich landscapes, floodable areas should be recreated and the attitudes of foresters should evolve accordingly.     

Changes in plant species diversity along a chronosequence of vegetation restoration in the humid evergreen broad-leaved forest in the Rainy Zone of West China

Plant species diversity has been recognized as one of the vital attributes for assessing vegetation restoration. Changes in the diversity may be related to different stages of succession. In this study, 54 sites of humid, evergreen, broad-leaved forest were selected in the Rainy Zone of West China. A chronosequence of the sites was used to study the successive patterns of the diversity in the forest that had undergone natural regeneration for 5 to 350 years and to test the hypothesis that the diversity is maximized in mid-succession. Data were collected simultaneously at different stages of succession, and four α-diversity indices (species richness, Margalef index, Shannon-Wiener index, Pielou Evenness index) and two β-diversity indices (Whittaker index, Sørensen’s index) were calculated for each stratum in each plot. A total of 394 vascular plant species were recorded. From the β-diversity indices, the forest succession may be divided into the early-successional stage (before 50 years), mid-successional stage (from 50 to 300 years), and late-successional stage (after 300 years). In this community, the species diversity and richness were found to be the greatest at the mid-successional stage, followed by the late- and early-successional stages. The results of regression analysis indicated that the richness and Margalef index peaked around the 175th and 165th year, respectively. Shannon-Wiener index values also appeared to follow an approximately humped pattern of succession and were maximal around the 100th year. However, the species evenness did not show any significant relationship with successional age. Our results demonstrate (1) forest restoration is a long-term process and the formation of climax forest requires at least 300 years and (2) the forest has a strong capacity for restoration. Our results also suggest Lindera limprichitii and Machilus pingii as ideal tree species for afforestation because of their wide niche.     

Threat spots and environmental determinants of red-listed plant,butterfly and bird species in boreal agricultural environments

The aims of this study were (1) to examine the geographic distribution of red-listed species of agricultural environments and identify their national threat spots (areas with high diversity of threatened species) in Finland and (2) to determine the main environmental variables related to the richness and occurrence patterns of red-listed species. Atlas data of 21 plant, 17 butterfly and 11 bird species recorded using 10 km grid squares were employed in the study. Generalized additive models (GAMs) were constructed separately for species richness and occurrence of individual species of the three species groups using climate and land cover predictor variables. The predictive accuracy of models, as measured using correlation between the observed and predicted values and AUC statistics, was generally good. Temperature-related variables were the most important determinants of species richness and occurrence of all three taxa. In addition, land cover variables had a strong effect on the distribution of species. Plants and butterflies were positively related to the cover of grasslands and birds to small-scale agricultural mosaic as well as to arable land. Spatial coincidence of threat spots of plants, butterflies and birds was limited, which emphasizes the importance of considering the potentially contrasting environmental requirements of different taxa in conservation planning. Further, it is obvious that the maintenance of various non-crop habitats and heterogeneous agricultural landscapes has an essential role in the preservation of red-listed species of boreal rural environments.     

Temporal Variation and Co-occurrence Patterns of Bacterial Communities in Eutrophic Lake Taihu,China

To understand the long-term and local variations of bacteria under the influence of annually re-occurred water bloom, bacterial community composition (BCC) was investigated monthly for 3 years (2009–2011) at four different sites located across Lake Taihu. The bacterial community composition was analyzed by 16S rRNA gene clone libraries and terminal restriction fragment length polymorphism. Co-occurrence patterns among bacterial taxa and environmental variables were determined through network analysis. Overall, strong seasonal variation patterns of BCC were observed whilst the spatial variations of BCC were slight in the long-term observation. However, core species bacteria persisted throughout the annual variations. Network analysis showed that the highly connected operational taxonomic units in bacteria-environment network included both the numerically dominant taxa and some functional groups with low abundance, such as Methylophilaceae and Nitrospira. Co-occurrence networks further revealed that the correlations of bacteria-bacteria could be more critical than those between environment and bacteria in structuring microbial communities, and would be a crucial driving factor of BCC in Lake Taihu.     

滇南片断热带雨林植物物种多样性变化趋势

采用群落样方（５０×５０ｍ）调查分析法,探讨滇南西双版纳曼仰广龙山片断热带雨林群落中木本植物物种多样性１９５９～１９９１年间的变化趋势。结果表明,该片断森林经３０多年的演化,物种数变化不大,但物种多样性指数降低２４％。在片断热带雨林中,物种的消失率与新增率虽相对平衡,但由于物种的生物学、生态学特性不同,呈现明显的消长变化趋势,即：在群落的不同层次中,物种消失率和新增率都是乔木（Ａ．Ｂ．Ｃ）＜灌木（Ｄ）,在乔木层中则是Ａ＜Ｂ＜Ｃ;就物种的不同确限度而言,消失率和新增率都是特征种＜适宜种＜随遇种＞外来种。此外,本研究认为群落内小气候由“凉湿效应”向“干暖效应”转化,是片断热带雨林物种多样性变化的一个重要环境因素。     

Fruit type,life form and origin determine the success of woody plant invaders in an urban landscape

The spread of alien plant species is a critical ecological event worldwide, but the forces that control this spread are not well documented. Alien plant species are well known to disrupt ecological services of native ecosystems, change the composition of native habitats, and often lead to the extirpation of native flora and fauna. Here, we report on life history patterns of plant species with rapidly spreading and declining ranges in North America’s major urban region. We tested for differences in life history traits between the 466 native and alien woody flora of the New York metropolitan area. We also examined the relationship between life history traits and change in distribution in the New York metropolitan area between 1900 and 2000. Native and alien species of the New York metropolitan area differ with respect to pollination vector and breeding system. However, pollination vector and breeding system are not associated with success, defined here as increasing range spread in the urban environment; instead, fruit type (dispersal), life form and origin are important determinants of success. Alien species that are deciduous trees, shrubs or vines with fleshy fruit are the most successful in increasing their distribution in this urban landscape. Newly introduced species with these characteristics are expected to have a better chance at establishing in similar urban landscapes and should be targets for intensive management. The ability to predict which alien species will become invasive is also a valuable tool for the prevention of invasions by newly introduced plant species.