Assessment of an index of biological integrity (IBI) to quantify the quality of two tributaries of river Chenab,Sialkot, Pakistan

Nullah Aik and Nullah Palkhu, two tributaries of river Chenab, were investigated for the assessment of fish habitat degradation as indicator of stream health. Fish abundance data were collected from 18 sites from September 2004 to April 2006 to develop multimetric indices for fish assemblage integrity and to detect the intensity of habitat degradation. A total of 12 metrics were calculated on the basis of taxonomic richness, habitat preference, trophic guild, stress tolerance and origin of species to develop stepped and continuous index of biological integrity (IBI) criteria. Cluster analysis (CA) classified sites based on species composition into three groups, viz., reference, moderately impaired and impaired groups. Non-metric multidimensional scaling (NMDS) was applied to identify underlying ecological gradient to highlight the habitat degradation. NMDS segregated two sites as less impaired, five sites as moderately impaired and eleven sites as impaired groups. Axes 1 and 2 explained a total variation of 53.3%. First axis explained the level of habitat impairment, whereas axis 2 indicated species richness along longitudinal gradient of streams. Sites located upstream of Nullah Aik showed higher IBI scores which dropped to its lowest in downstream sites near Sialkot city. Lowest values of IBI of sites in close proximity of city indicated the role of anthropogenic activities in catchment areas. The results indicated that variability in water chemistry can be related as a function of stream sites impairments (i.e., unimpaired, moderately impaired, and severely impaired). Water quality parameters showed strong correlation with IBI scores. Significantly negative correlation of IBI scores with COD, TDS, turbidity, Fe, Cr, Zn and positive correlation with DO and pH was found. The results can be used for restoration and future management of small streams passing through urban areas of Pakistan. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users. Handling editor: J. A. Cambray     

Small scale application and assessment of a Index of Biotic Integrity for a large boreal river

Modifications and use of Karr’s Index of Biotic Integrity (IBI) for assessing the effects of anthropogenic impacts to aquatic ecosystems have typically occurred using data collected at the macro scale. However, some non-point sources of habitat degradation occur at small scales. One possible source of perturbation to fish habitat in boreal rivers is the application of rip rap shoreline armouring in human use areas. In this study we assess the use of IBI in a small scale setting and discuss the potential impact of rip rap shoreline armouring. We captured small and juvenile fishes weekly during 2002–2003 from 12 sample sites within the littoral zone of a human use area using a modified beach seine. Principal component analysis (PCA) was performed on the data to examine the relationship between species composition and IBI scores. We also performed PCA on the IBI metrics to assess our modifications. The IBI method produced higher scores for armoured sites than for unarmoured sites. We found a strong rank order correlation (Spearman’s ρ > 0.93; p < 0.001) between the modified IBI scores and the first principal component, suggesting that Karr’s original empirically-based IBI is strongly linked to species composition. We found a high degree of redundancy between the metrics of the IBI that validate our modifications. These results suggest that IBI can be a suitable method for assessing non-point impacts from within a small study area. Our results also indicate that fish habitat from rip rap armoured sites within the test area had consistently higher IBI scores that unarmoured sites.     

Status assessment in acid-sensitive and non-acid-sensitive Maryland coastal planin streams using an integrated biological,chemical, physical,and land-use approach

This study was designed to: (1) evaluate the ecological status of acid-sensitive and non acid-sensitive Maryland coastal plain streams using biological (Index of biotic Integrity [IBI] for fish), chemical and physical habitat conditions; (2) determine if a low IBI for coastal plain stream fish can be related to stream sensitivity from acidic inputs and (3) correlate land use activities and watershed size in the coastal plain streams with biological, chemical and physical conditions. IBI values obtained using 12 community metrics for Maryland coastal plain stream fish demonstrated that there were no significant differences in these values when acid-sensitive and non-acid-sensitive streams were compared. However, other complementary data in acid-sensitive streams such as absence of the acid-sensitive species, blacknose dace and higher numbers and biomass of tolerant species suggested that these streams may be impacted. IBI values were also found to be negatively correlated with various trace metals in acid-sensitive streams but not in non-acid-sensitive areas. Chemical conditions such as trace metals and nutrients were associated with land use activities. Highest concentrations of trace metals (chromium, nickel, and cadmium) were found in streams with the highest percentage of low residential housing. Nitrate concentrations were significantly higher in streams found in agricultural areas than in forested areas. Agriculturally dominated streams with highest nitrate concentrations (> 10 mg l^-1) also contained the highest percentage of livestock feeding operations. The mean IBI score for streams draining agricultural land was higher than the mean value for forested streams when all streams were compared. However, when several streams that were only marginally forested (< 50%) were removed from the analysis, the IBI scores did not differ significantly by land use. Two physical habitat indices exhibited a strong associated with each other. Each habitat index also correlated with IBI values.     

An index of biotic integrity based on fish assemblages for subtropical streams in southern Brazil

Several methods for calculating indices of biological integrity (IBIs) have been developed for different ecogeographic regions of the world. All of them calculate IBI scores by comparing against reference sites or historical data on fish assemblage composition. Because of intensive agriculture and urbanization in our study area, we located no reference sites, and historical information about fish assemblage composition did not exist. Instead, we developed hypothetical reference scores based on seasonal electrofishing surveys at six study sites in adjacent but geomorphologically different watersheds. Our IBI included 10 metrics that varied with degree of degradation. We found that Shannon–Wiener indices varied significantly between seasons, indicating significant changes in species composition. Therefore, we calculated seasonal IBI scores also, but these did not significantly differ from each streams general IBI score, which was calculated on the basis of four samples per site. General stream IBI scores reflected differing levels of anthropogenic disturbance.     

Modification of an index of biotic integrity based on fish assemblages to characterize rivers of the Seine Basin,France

The Index of Biotic Integrity (IBI) is a measure of fish assemblage health that has been used to assess catchment and stream quality throughout North America. It reflects human perturbations on natural environmental structures and processes. While preserving the ecological foundation of the original North American metrics, we have modified and adapted the IBI to the mainstem Seine River and its major tributaries in France. This successful modification of the IBI to a considerably different fish fauna on a different continent further supports its wider use outside the midwestern United States. Using data collected in 1967, 1981, and 1988–1989 from a total of 46 sites, we show spatial and temporal variation in the Seine as indicated by IBI scores. Statistically significant relationships were found between IBI and catchment area but insignificant relationships existed between IBI and an independent Water Quality Index (WQI) based on water chemistry. Comparisons between the IBI and the WQI indicate that the former is a more sensitive and robust measure of water body quality. Our results demonstrate that the IBI, combined with a statistically designed national monitoring program, would offer a reliable means of assessing spatial patterns and temporal trends in water body improvement or degradation in France. The more primitive fish families in the Basin were affected first by perturbations. These families include all the diadromous species found in the Seine and suggest serious disruption of their life histories.     

Effects of Landscape and Riparian Condition on a Fish Index of Biotic Integrity in a Large Southeastern Brazil River

Environmental conditions of a large river in southeastern Brazil were assessed by evaluating fish assemblage structure (index of biotic integrity, IBI), landscape use (forest, pasture, urban area, and tributary water) and riparian condition. A survey of the 338 km-long middle reach of the Rio Paraiba do Sul, containing a large urban-industrial complex, was conducted in two seasons: summer/wet and winter/dry. Fish were sampled with a standardized level of effort twice at seven sites, between March 2001 and April 2002, by gill nets, cast nets, sieves and seines. Riparian condition was evaluated by direct observations, and land use maps were used to assess landscape condition of an 8 km² buffer surrounding each site. IBI scores ranged from 5 to 36 (out of a possible range of 4–40), with lowest values at an urban-industrial landscape, and highest scores upstream and downstream, indicating the river’s recovery capacity. The most appropriate time to assess IBI was during the winter/dry period, when sampling was more effective and the IBI was more sensitive to changes in environmental quality. Landscape use and riparian condition were correlated, and IBI was positively correlated with % pasture, % tributary area, and riparian condition, but negatively correlated with % urban area. In some cases urban areas eliminated riparian woody vegetation, destabilizing site physical habitat structure.     

Large-scale assessments of river health using an Index of Biotic Integrity with low-diversity fish communities

1. Effective tools are needed to measure the ‘health’ of rivers at scales large enough to be useful for management. Indicators for assessing the complex of variables that constitutes river health need to be ecologically based, efficient, rapid and consistently applicable in different ecological regions. 2. A large-scale survey of rivers in New South Wales, Australia provided data to test the Index of Biotic Integrity (IBI). The IBI employs the fish-community attributes, identified using regional and river-size data, expected for a river reach of excellent environmental quality. It uses metrics based on species richness, abundance, community structure and the health of individual fish. IBI metrics were established to suit a relatively low-diversity and unspecialized freshwater fish fauna in south-eastern Australia, totalling 55 species. 3. The IBI was able to discriminate between relative levels of environmental quality within a diverse set of stream systems and four presumptive ecological regions. The index was validated by testing the repeatability of scores, and by comparison of IBI scores at eighty sites with an independent measure of potential catchment condition, the River Disturbance Index. 4. Assessments of metric performance showed that eleven of the twelve metrics contributed satisfactorily. One metric based on trophic guild performed poorly and should be deleted from the index. Six other recommendations are made to enhance the performance of the IBI. 5. Results show that, while all large rivers have been disturbed, rivers in the Murray region and those in many coastal montane areas are particularly degraded. 6. The IBI results presented here demonstrate a validated method for large-scale monitoring of river health based on a fish fauna of limited diversity, in the absence of suitable reference sites.     

Long-term changes in ecosystem health of two Hudson Valley watersheds, New York, USA, 1936–2001

We examined long-term ecological change in two Hudson River tributaries, the Wappinger and Fishkill Creek watersheds in Dutchess County, New York State. Fish data spanning 65 years (1936, 1988, 1992, and 2001) and shorter term macroinvertebrate data (1988, 2001) were used to assess the influence of land use practices. Between 1988 and 2001, macroinvertebrate index Biotic Assessment Profile (BAP) improved by 113–165% in the Fishkill Creek watershed, and fish Index of Biotic Integrity (IBI) improved by 117–140%. Fish IBI and fish species richness were significantly different (p < 0.01) between the watersheds, with Wappinger Creek in better condition. Long-term fish IBI scores showed degradation in both watersheds since the 1930s. Changes in species composition suggest community homogenization on par with overall changes in the fish fauna of New York. Most notable were increases in tolerant species and declines in intolerant or moderately tolerant species. Whereas Fishkill Creek IBIs showed decline in 1988 relative to 1936, followed by improvement, Wappinger Creek declined monotonically in environmental quality. Development has intensified in both watersheds, but Fishkill Creek is improving while Wappinger Creek watershed is undergoing less mitigated degradation. We find that older, semi-quantitative data can be used to construct environmental quality indicators, and can be of great use for measuring long-term change.     

Macroinvertebrate community response to natural and forest harvest gradients in western Oregon headwater streams

1. To examine the effects of forest harvest practices on headwater stream macroinvertebrates, we compiled a 167 site database with macroinvertebrate, fish, physical habitat and catchment land cover data from the three forested ecoregions in western Oregon. For our analysis, headwater streams were defined by catchment areas <10 km² and perennial water during summer low flows. Almost all sites in the database were selected using a randomised survey design, constituting a representative sample of headwater streams in these ecoregions. 2. Macroinvertebrate taxonomic and functional feeding group composition were very similar among the three ecoregions in the study area (Coast Range, Cascades and Klamath Mountains). On average, 55% of the individuals at each site were in the orders Ephemeroptera, Plecoptera or Trichoptera. Dipteran taxa (mostly chironomids) accounted for another 34%. At almost all sites, non‐insects made up <10% of the macroinvertebrate assemblage. Almost half (49%) of the assemblages were collectors; remaining individuals were about evenly divided among scrapers, shredders and predators. 3. There were 189 different macroinvertebrate taxa at the 167 sites with richness at individual sites ranging from 7 to 71 taxa. Ordination by non‐metric multidimensional scaling revealed a strong association between % Ephemeroptera, especially Baetis, and site scores along the first axis. This axis was also strongly related to % coarse substratum and fast water habitat. The second axis was strongly related to % intolerant individuals, site slope and altitude. No strong relationships were evident between any ordination axis and either logging activity, presence/absence of fish, catchment size or ecoregion. 4. Based on macroinvertebrate index of biotic integrity (IBI) scores, 62% of the sites had no impairment, 31% of the sites had slight impairment and only 6% of the sites had moderate or severe impairment. IBI scores were not strongly related to forest harvest history. All four severely impaired sites and five of the seven sites with moderate impairment were lower altitude, shallower slope stream reaches located in the Coast Range with evidence of agricultural activity in their catchment or riparian zone. % sand + fine substratum was the environmental variable most strongly related to macroinvertebrate IBI.     

Observational evidence of the sensitivity of some fish species to environmental stressors in Mediterranean rivers

We describe a tolerance classification based on the physicochemical parameters of water and habitat quality indices for native and introduced fish species in northeastern Spain. Although fish are widely used as biological indicators, the tolerance categories currently available for Spanish Mediterranean fish species are uncertain or subjective. We sampled 430 sites covering a wide range of river conditions, allowing us to develop tolerance scores based on a quantitative assessment. We used indirect ordination methods to establish stress gradients between the environmental variables compiled during the monitoring surveys carried out from 2002 to 2008. We then drew up a tolerance classification for the most common species in our dataset using weighted average inference models based on the following gradients: water quality and the state of physical habitat. The results were corroborated by multivariate gradient analysis. The fish scores obtained were applied to an independent dataset and a positive correlation was found between assessment protocols. Our results corroborate the use of fish, including exotic fish species, as biological indicators. Our findings may be used in a regional Index of Biotic Integrity and for the use of fish in bioassessment studies based on scores.     

A fish-based index of biotic integrity for upstream brooks in Flanders (Belgium)

From 1994 to 2000, 154 sites belonging to the grayling and trout zones were used to develop a fish-based multimetric Index of Biotic Integrity (IBI) as a tool to assess upstream brooks in Flanders (Belgium). All sites had a slope of at least 3‰ and a maximum width of 4.5 m. Fish assemblages were surveyed by electrofishing. From 28 candidate metrics 9 metrics were selected using ecological criteria and statistical analyses. The IBI was defined as the average of these 9 metrics after scoring them as 1, 3 or 5 by a modified trisection method and five integrity classes were defined to comply with the European Water Framework Directive (WFD). The IBI was tested internally by comparison with habitat quality scores at sites. A similar comparison was done using an independent set of data from sites of known ecological quality. Our IBI clearly distinguished good sites from disturbed sites and heavily disturbed sites from moderately disturbed sites, thereby meeting the criteria imposed by the WFD.     

The influence of stream habitat and water quality on macroinvertebrate communities in degraded streams of northwest Mississippi

Streams in the loess hills of northwest Mississippi have undergone dramatic physical changes since European settlement and both physical and water quality processes may play a role in influencing biotic communities of these stream systems. The objectives of this study were to identify the response of macroinvertebrate taxa to water quality and habitat parameters in streams of northwest Mississippi, examine the efficacy of an a priori classification system of stream channel evolution and condition class using macroinvertebrate communities, and examine short-term (<2 yr) temporal variation of macroinvertebrate communities. Separation of sites based on four condition classifications was not distinct. However, best attainable sites did plot together in an ordination analysis suggesting similarity in macroinvertebrate communities for least disturbed sites. Similarly, for stage of channel evolution, sites characterized by lack of bank failure and sinuous fluvial processes had relatively similar macroinvertebrate communities. Ordination analysis also indicated high temporal variation of macroinvertebrate communities. Reference sites (best attainable and stable sites) had more similar communities between years than unstable and impacted sites. Results of this study: (1) suggest total solids, total phosphorus concentration, percent substrate as sand, ammonia concentration, and conductivity were important variables for structuring stream macroinvertebrate communities in northwest Mississippi, (2) identify potential indicator taxa for assessing such streams based on water quality and physical habitat, (3) provide support for current a priori site classifications at the best attainable (least impacted) category relative to the macroinvertebrate communities, and (4) demonstrate that between-year variation is an important factor when assessing streams of north Mississippi and this variability may be related to the degree of stream degradation.     

The impact of rare taxa on a fish index of biotic integrity

The index of biotic integrity (IBI) is a commonly used bioassessment tool that integrates abundance and richness measures to assess water quality. In developing IBIs that are both responsive to human disturbance and resistant to natural variability and sampling error, water managers must decide how to weigh information about rare and abundant taxa, which in turn requires an understanding of the sensitivity of indices to rare taxa. Herein, we investigated the influence of rare fish taxa (within the lower 5% of rank abundance curves) on IBI metric and total scores for stream sites in two of Minnesota's major river basins, the St. Croix (n = 293 site visits) and Upper Mississippi (n = 210 site visits). We artificially removed rare taxa from biological samples by (1) separately excluding each individual taxon that fell within the lower 5% of rank abundance curves; (2) simultaneously excluding all taxa that had an abundance of one (singletons) or two (doubletons); and (3) simultaneously excluding all taxa that fell within the lower 5% of rank abundance curves. We then compared IBI metric and total scores before and after removal of rare taxa using the normalized root mean square error (nRMSE) and regression analysis. The difference in IBI metric and total scores increased as more taxa were removed. Moreover, when multiple rare taxa were removed, the nRMSE was related to sample abundance and to total taxa richness, with greater nRMSE observed in samples with a larger number of taxa or sample abundance. Metrics based on relative abundance of fish taxa were less sensitive to the loss of rare taxa, whereas those based on taxa richness were more sensitive, because taxa richness metrics give more weight to rare taxa compared to the relative abundance metrics.     

Validation of a fish-based index of biotic integrity for streams and rivers of central Mexico

An existing version of a fish assemblage-basedindex of biotic integrity (IBI) for the streamsand rivers of west central Mexico was testedwith independent data to validate itsusefulness as a measure of ecosystem qualityand to determine the geographic area where itis effective. Fish assemblages from 63 uplandsites in 10 basins in central Mexico(Armería, Ameca, Coahuayana, Marabasco,Purificación, Grande de Morelia, Grande deSantiago, Lerma, Balsas and Pánuco) wereassessed using the metrics and scoring criteriafrom the existing IBI and then compared withindependent evaluations of habitat and waterquality. IBI scores were congruent withhabitat and water quality values in theArmería, Purificación and Marabascobasins, where the IBI was first developed, aswell as in the adjacent Ameca and Coahuayanabasins. We conclude that the IBI can be usedwithout modification to assess environmentalquality in non-coastal streams and riverswithin these five basins. Further data areneeded from the Grande de Morelia, Grande deSantiago and middle Lerma basins, but ourresults suggest that the existing IBI may alsobe effective here. However, the existing IBIdoes not consistently reflect habitat and waterquality conditions in the Balsas and Pánucobasins and must be modified before it can beapplied there. Necessary modifications in theBalsas basin appear to be small and relatedprimarily to changes in the scoring criteriafor metrics. However, in the Pánuco basinmore substantive changes in the nature of themetrics are required. Changes in the IBI forthese basins are proposed. The IBI is nowvalidated for use in river monitoring,conservation and restoration efforts in 5basins in west central Mexico and suggestionsfor its application in other basins areavailable here.     

The bioassessment of fish and macroinvertebrates in a Mediterranean–Atlantic climate: Habitat assessment and concordance between contrasting ecological samples

Human intervention and drought conditions in Mediterranean rivers may necessitate the collection of organisms from a different habitat type to that specified by the original bioassessment protocol; it is therefore critical to understand the consequences of adaptive sampling strategies in these lotic systems. In a survey of 31 streams (2nd–4th order) in northern Portugal we collected separate macroinvertebrate samples from running-water and standing-water habitats and fish samples from a delineated reach, inclusive of all habitat types. In addition to collecting habitat data specific to macroinvertebrates and fish we conducted a generalized River Habitat Survey (RHS) and derived scores designed to report habitat quality and habitat degradation. Ecological data were described in terms of taxonomic structure, functional organization and by biotic indices and interpreted in relation to habitat data, comparing samples within and between sites for concordance. Macroinvertebrates from respective habitats differed in their relationship with habitat variable with running-water samples more strongly related to substrate and water quality and standing-water samples more strongly reflecting habitat characteristics at the reach scale. Running- and standing-water samples from the same-site varied widely, indicating that substituting standing-water for running-water samples in macroinvertebrate-based bioassessment carries a high risk of misclassification. However, a consistent bias in index scores suggests that a habitat-adjusted interpretation of biotic indices could be employed to improve measurement precision. Variation in key parameters of the fish community corresponded to changes in water quality and habitat structure and to reach-scale features recorded by the RHS. Trends between macroinvertebrate and fish measurements indicated common patterns for oxygen/flow sensitive taxa and for trophic organization that were related to similar habitat preferences. Whilst macroinvertebrates demonstrated no relationship with derived scores of habitat quality, the fish-based Index of well-being (Iwb) was strongly related to the Habitat Modification Score. Overall these data indicate how different ecological samples can be used to focus on different aspects of habitat quality and are suggestive of strategies for both the collection and interpretation of ecological data that would improve assessment performance. This study emphasizes the need to adapt assessment methods not only to the species pool but also to the differences in the managed and natural habitat characteristics of these types of Mediterranean streams.     

Effects of coalbed natural gas development on fish assemblages in tributary streams of the Powder and Tongue rivers

1. Extraction of coalbed natural gas (CBNG) often results in disposal of large quantities of CBNG product water, which may affect aquatic ecosystems. We evaluated the effects of CBNG development on fish assemblages in tributary streams of the Powder and Tongue rivers. We used treatment and control, impact versus reference sites comparisons, surveys of CBNG product‐water streams and in situ fish survival approaches to determine if CBNG development affected fish assemblages. 2. Several of our results suggested that CBNG development did not affect fish assemblages. Species richness and index of biotic integrity (IBI) scores were similar in streams with and streams without CBNG development, and overall biotic integrity was not related to the number or density of CBNG wells. Fish occurred in one stream that was composed largely or entirely of CBNG product water. Sentinel fish survived in cages at treatment sites where no or few fish were captured, suggesting that factors such as lack of stream connectivity rather than water quality limited fish abundance at these sites. Fish species richness did not differ significantly from 1994 to 2006 in comparisons of CBNG‐developed and undeveloped streams. Biotic integrity declined from 1994 to 2006; however, declines occurred at both impact and reference sites, possibly because of long‐term drought. 3. Some evidence suggested that CBNG development negatively affected fish assemblages, or may do so over time. Specific conductivity was on average higher in treatment streams and was negatively related to biotic integrity. Four IBI species richness metrics were negatively correlated with the number or density of CBNG wells in the catchment above sampling sites. Bicarbonate, one of the primary ions in product water, was significantly higher in developed streams and may have limited abundance of longnose dace (Rhinichthys cataractae). Total dissolved solids, alkalinity, magnesium and sulphate were significantly higher in developed streams. 4. Biological monitoring conducted before the development of CBNG, and continuing through the life of development and reclamation, together with data on the quantity, quality and fate of CBNG product water will allow robust assessment of potential effects of future CBNG development worldwide.     

Temporal and spatial variation in an index of biological integrity for the middle Wabash River, Indiana

Few studies have addressed within-year temporal variation of IBI scores. We compared index of biotic integrity (IBI) scores for two summer sampling events from a large river during 25 annual periods. The results indicated that IBI scores calculated from June samples were not significantly different from July samples. Spatial autocorrelation was present, such that sites that were closer together produced similar IBI scores and could not be considered independent. Temporal autocorrelation was present, but was not strong. Lower quality sites (low IBI score) did not have higher variation than higher quality sites. Our results show that a single sample of fishes by boat electrofisher during the summer in a large river such as the Wabash River can produce a repeatable estimate of IBI score. Thus, repeated or additional sampling within the summer season to improve the quality of the evaluation is not warranted. Handling editor: J. Trexler     

A fish index of biotic integrity for South Dakota's Northern Glaciated Plains Ecoregion

Ecosystem goods and services in streams are impaired when their biotic communities are degraded by anthropogenic stressors. An index of biotic integrity (IBI) translates community structure into a standardized ecoregion-specific stream health score. Documenting stream health is especially important in the Northern Glaciated Plains (NGP) Ecoregion, which is undergoing rapid landscape alterations through increased agriculture production. Our objectives were to develop a fish IBI and validate candidate reference sites for NGP wadeable perennial streams. Fish were sampled from 54 sites (consisting of reference sites, known-condition least and most disturbed sites, and random sites) during summers 2006–2011. Candidate metrics were sorted into nine metric classes based on attributes of fish assemblage form and function. Metric values were screened using metric range, signal-to-noise ratios, responsiveness to disturbance, and redundancy tests until each metric class contained only those metrics most responsive to anthropogenic stressors. The final IBI consisted of six metrics that were reflective of prairie stream fish assemblages, and differentiated between known-condition least and most disturbed sites. The mean reference sampling site IBI scores were found to be similar to both least and most disturbed sites (Mann–Whitney U-test; P < 0.05). Twelve reference site scores were below the NGP's median (69), whereas the other 11 sites were above the median and were representative of least disturbed conditions. We now have developed a standardized bioassessment tool for evaluating stream health, as well as a baseline for long-term monitoring in a dynamic ecoregion.     

Habitat structural complexity and morphological diversity of fish assemblages in a Neotropical floodplain river

High species richness and evenness in structurally complex habitats has been hypothesized to be associated with niche partitioning. To test this idea, relationships between habitat structural complexity in river littoral-zone habitats and morphological diversity of tropical fishes were examined in the Cinaruco River, Venezuela. Six habitat attributes were quantified in 45 sites spanning a range of structural complexity. Fishes were collected during day and night to estimate species density and relative abundances at each site. Twenty-two morphological variables were measured for each species. Principal components analysis (PCA) of physical habitat data yielded two axes that modeled >80% of variation across sites. The first two axes from PCA of fish morphological variables modeled >70% of variation. Species density during both day and night was negatively associated with flow velocity and positively associated with habitat complexity. Similarity of day and night samples from the same site was significantly greater for sites with high habitat complexity and low flow. In general, mean local assemblage morphological PC scores were not significantly associated with habitat PC scores. Average, maximum, and standard deviation of morphological Euclidean distances of local assemblages revealed positive associations with structural complexity and negative associations with flow. These relationships held even when the positive relationship of species density was statistically removed from assemblage morphological patterns. Findings suggest that both species niche compression and assemblage niche space increase when habitat complexity is greater and flow velocity is lower in this tropical lowland river.Electronic Supplementary Material Supplementary material is available for this article at     

Autumn use of woody snags by fishes in backwater and channel border habitats of a large river

Snags are important to fish communities in small rivers and streams, but their importance to fishes in large rivers has not been investigated. This study examined snag use by fishes during autumn in backwater and channel border habitats in the upper Mississippi River, and compared these to fish communities in reference sites without snags. Species assemblages differed significantly between backwater and channel border habitats, and between snag and reference sites within the channel border, likely responding to differences in substrate, depth, and current velocity. In both habitats, average fish biomass and abundance were higher (2 to 50 ×) at snag sites than at reference sites, but these differences were significant only for channel border biomass. Fish taxa richness differed between backwater and channel border habitats, but not between snag and reference sites. Most large piscivorous fishes (e.g., Micropterus spp., Stizostedion spp.), several insectivorous fishes (Lepomis macrochirus, Ambloplites rupestris, Minytrema melanops), and a few prey fishes (L. macrochirus, Notropis atherinoides) were significantly more abundant at snag sites than at reference sites, suggesting active selection of snags for foraging or protection. Snag quality, as assessed by a snag rating index, had a direct effect on attracting fish communities with greater biomass, especially within the channel border habitat. These results indicate that snags are important habitat for fish communities in both backwaters and channel border habitats of the upper Mississippi River.