An ethological analysis of types of agonistic interaction in a captive group of Java-monkeys (Macaca fascicularis)

The primate literature provides many indications not only that the nature of dyadic interactions is to a large extent determined by the relations of the interacting animals with others and between these others, but also of the existence of polyadic interactions in which more than two individuals are simultaneously involved. The objectives of the present study are to obtain a quantitative categorization of the agonistic interaction types of captive Java-monkeys and an analysis of their dynamics. After having described the agonistic behaviour patterns of Java-monkeys we shall discuss the categorization of agonistic interaction types (depending on the number of involvees: “dyads”, “triads” and “polyads”), the way in which these types can be further differentiated on the basis of the nature and the direction of the behaviours shown (e.g., different types of alliances), and the existence of so-called “sub-directed” behaviours (i.e., non-agonistic behaviours which are shown towards a dominant third animal more or less simultaneously with aggressive behaviour directed towards an opponent). The analysis indicates that agonistic behaviour is different both in its form and its regulation in interactions of different complexity. This research was supported in part by a government grant (i.e.: Beleidsruimte project: 16-21-06, “Brain and Behaviour”) to the first author. The investigation was supported by a grant from the Beleidsruimtemiddelen Hersenen en Gedrag to the first author.     

Inventory, differentiation, and proportional diversity: a consistent terminology for quantifying species diversity

Almost half a century after Whittaker (Ecol Monogr 30:279–338, 1960) proposed his influential diversity concept, it is time for a critical reappraisal. Although the terms alpha, beta and gamma diversity introduced by Whittaker have become general textbook knowledge, the concept suffers from several drawbacks. First, alpha and gamma diversity share the same characteristics and are differentiated only by the scale at which they are applied. However, as scale is relative––depending on the organism(s) or ecosystems investigated––this is not a meaningful ecological criterion. Alpha and gamma diversity can instead be grouped together under the term “inventory diversity.” Out of the three levels proposed by Whittaker, beta diversity is the one which receives the most contradictory comments regarding its usefulness (“key concept” vs. “abstruse concept”). Obviously beta diversity means different things to different people. Apart from the large variety of methods used to investigate it, the main reason for this may be different underlying data characteristics. A literature review reveals that the multitude of measures used to assess beta diversity can be sorted into two conceptually different groups. The first group directly takes species distinction into account and compares the similarity of sites (similarity indices, slope of the distance decay relationship, length of the ordination axis, and sum of squares of a species matrix). The second group relates species richness (or other summary diversity measures) of two (or more) different scales to each other (additive and multiplicative partitioning). Due to that important distinction, we suggest that beta diversity should be split into two levels, “differentiation diversity” (first group) and “proportional diversity” (second group). Thus, we propose to use the terms “inventory diversity” for within-sample diversity, “differentiation diversity” for compositional similarity between samples, and “proportional diversity” for the comparison of inventory diversity across spatial and temporal scales. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Subtropical coral-reef associated sedimentary facies characterized by molluscs (Northern Bay of Safaga, Red Sea, Egypt)

Summary The shallow marine subtropical Northern Bay of Safaga is composed of a complex pattern of sedimentary facies that are generally rich in molluscs. Thirteen divertaken bulk-samples from various sites (reef slopes, sand between coral patches, muddy sand, mud, sandy seagrass, muddy seagrass, mangrove channel) at water depths ranging from shallow subtidal to 40m were investigated with regard to their mollusc fauna >1mm, which was separated into fragments and whole individuals. Fragments make up more than 88% of the total mollusc remains of the samples, and their proportions correspond to characteristics of the sedimentary facies. The whole individuals were differentiated into 622 taxa. The most common taxon,Rissoina cerithiiformis, represented more than 5% of the total mollusc content in the samples. The main part of the fauna consists of micromolluscs, including both small adults and juveniles. Based on the results of cluster-, correspondence-, and factor analyses the fauna was grouped into several associations, each characterizing a sedimentary facies: (1) “Rhinoclavis sordidula—Corbula erythraeensis-Pseudominolia nedyma association” characterizes mud. (2) “Microcirce sp.—Leptomyaria sp. association” characterizes muddy sand. (3)”Smaragdia spp.-Perrinia stellata—Anachis exilis—assemblage” characterizes sandy seagrass. (4) “Crenella striatissima—Rastafaria calypso—Cardiates-assemblage” characterizes muddy seagrass. (5) “Glycymeris spp.-Parvicardium sueziensis-Diala spp.-assemblage” characterizes sand between coral patches. (6) “Rissoina spp.-Triphoridae —Ostreoidea-assemblage” characterizes reef slopes. (7) “Potamides conicus—Siphonaria sp. 2—assemblage” characterizes the mangrove. The seagrass fauna is related to those of sand between coral patches and reef slopes with respect to gastropod assemblages, numbers of taxa and diversity indices, and to the muddy sand fauna on the basis of bivalve assemblages and feeding strategies of bivalves. The mangrove assemblage is related to those of sand between coral patches and the reef slope with respect to taxonomic composition and feeding strategies of bivalves, but has a strong relationship to those of the fine-grained sediments when considering diversity indices. Reef slope assemblages are closely related to that of sand between coral patches in all respects, except life habits of bivalves, which distincly separates the reef slope facies from all others.     

The roles of body size and phylogeny in fast and slow life histories

Species’ life histories are often classified on a continuum from “fast” to “slow”, yet there is no consistently used definition of this continuum. For example, some researchers include body mass as one of the traits defining the continuum, others factor it out by analysing body-mass residuals, a third group performs both of these analyses and uses the terms “fast” and “slow” in both ways, while still others do not mention body mass at all. Our analysis of European and North American freshwater fish, mammals, and birds (N = 2,288 species) shows the fundamental differences between life-history patterns of raw data and of body-mass residuals. Specifically, in fish and mammals, the number of traits defining the continuum decreases if body-mass residuals are analysed. In birds, the continuum is defined by a different set of traits if body mass is factored out. Our study also exposes important dissimilarities among the three taxonomic groups analysed. For example, while mammals and birds with a “slow” life history have a low fecundity, the opposite is true for fish. We conclude that our understanding of life histories will improve if differences between patterns of raw data and of body-mass residuals are acknowledged, as well as differences among taxonomic groups, instead of using the “fast–slow continuum” too indiscriminately for any covarying traits that appear to suit the idea.     

The Preface to Darwin’s <Emphasis Type="Italic">Origin of Species</Emphasis>: The Curious History of the “Historical Sketch” *

Almost any modern reader’s first encounter with Darwin’s writing is likely to be the “Historical Sketch,” inserted by Darwin as a preface to an early edition of the Origin of Species, and having since then appeared as the preface to every edition after the second English edition. The Sketch was intended by him to serve as a short “history of opinion” on the species question before he presented his own theory in the Origin proper. But the provenance of the “Historical Sketch” is somewhat obscure. Some things are known about its production, such as when it first appeared and what changes were made to it between its first appearance in 1860 and its final form, for the fourth English edition, in 1866. But how it evolved in Darwin’s mind, why he wrote it at all, and what he thought he was accomplishing by prefacing it to the Origin remain questions that have not been carefully addressed in the scholarly literature on Darwin. I attempt to show that Darwin’s various statements about the “Historical Sketch,” made primarily to several of his correspondents between 1856 and 1860, are somewhat in conflict with one another, thus making problematic a satisfactory interpretation of how, when, and why the Sketch came to be. I also suggest some probable resolutions to the several difficulties. How Darwin came to settle on the title “Historical Sketch” for the Preface to the Origin is not certain, but a guess may be ventured. When he first submitted the text to Asa Gray in February 1860 he called it simply “Preface Contributed by the Author to this American Edition” (Burkhardt et al., eds., vol. 8, 1993, p. 572; the collected correspondence is hereafter cited as CCD). In fact he had thought of it as being properly called a Preface much earlier, perhaps as early as 1856, as will be seen in what follows. It came to be called “An Historical Sketch of the Recent Progress of Opinion on the Origin of Species” only in the third English edition, April 1861. This is the title it retained thereafter, with the exception of an addition to the title in the sixth English edition, “Previously to the Publication of the First Edition of this Work” (Peckham, 1959, pp. 20, 59). The word “sketch,” on the other hand was one of two words Darwin commonly used in private correspondence to refer to the book that would later become the Origin, the other word being “Abstract,” and both signifying that Darwin thought of the work as being a resume rather than a full-fledged study (e.g., letter to J.D. Hooker, May 9 1856, CCD vol. 6 p. 106; letter to Baden Powell January 18 1860, CCD vol. 8 p. 41; letter to Lyell 25 June 1858, CCD v. 7, 1991, pp. 117–8; letter to Lyell May 1856, CCD, v. 6 p. 100). The most likely source of the title “Historical Sketch” for Darwin’s Preface is Charles Lyell’s Principles of Geology in which, beginning with the third edition (1834), Lyell added titles to his chapters, calling chapters 2–4 “Historical Sketch of the Progress of Geology” (Secord, in Lyell [1997], p. xlvii; for other uses by Lyell of this expression, cf. Porter, 1976, p. 95; idem 1982, p. 38; and Lyell, 1830 [1990], p. 30). Further parallels between Lyell’s Introduction and Darwin’s “Historical Sketch” in terms of content and strategy are suggested below.     

HLA-C “blank” alleles express class I gene products. Biochemical analysis of four different HLA-C “blank” polypeptides

Monoclonal antibodies (mAbs) W6/32, HC10, and 4E were used to precipitate class I antigens from 21 selected individuals with at least oneHLA-C “blank” allele. In 19 of these individuals, characteristicHLA-C banding patterns which could be precipitated by all three HLA class I mAbs were observed on one-dimensional isoelectric focusing gels-obviously the gene products ofHLA-C “blank”. At least four allelic HLA-C “blank” gene products with different isoelectric points could be discerned. All of them segregated withHLA-C “blank” haplotypes in informative families; two of them were associated withHLA-B51, one withHLA-B38, and one withHLA-B18. Reactivity of the HLA-C “blank” heavy chains with mAb W6/32 indicates that they are able to associated with beta-2 microglobulin, and hence are most probably expressed at the cell surface.     

Interactive Bodies: The Semiosis of Architectural Forms

In this paper architectural forms are presented as symbolic forms issued from the complex semiosis that characterises human cognition (Ferreira (2007, 2010)). Being semiotic objects, these symbolic forms are, consequently, context- dependent_they emerge and have meaning, i.e., they are assigned a functional and/or aesthetic value, in particular physical, social and cultural frameworks. As it happens with all semiotic objects, architectural forms, whatever their nature, are not static but highly interactive. In fact, they act as agents of specific semiotic processes, engaged in a permanent dialectic relationship with the environment they are embedded in. From this dialectics important physical, social, cultural and economic changes frequently arise, redefining this way the original framework for decades to come. As Pallasmaa (2009) points out: “Architecture is existentially rooted, and it expresses fundamental existential experiences, the complex condensation of how it feels to be human being in this world. Architecture grounds and frames existence and creates specific horizons of perception, understanding and identity.” Architecture happens in the context of particular landscapes both natural and man-made, individuating spaces, assigning them an identity, turning the frequently undifferentiated physical environment into “locus”, “place”, “site”, “ort”, definitely contributing to the definition of the mental map that individual minds are able to share collectively. The fundamental role played by architectural forms in the definition of “place” and identity and in the shaping or reshaping of a physical, social and cultural environment is analysed in this paper through a case study that observes the consequences of this dynamics in the development of the social and cultural tissue of a particular city.     

Heterogeneity of heterochromatin in six species ofCtenomys (Rodentia: Octodontoidea: Ctenomyidae) from Argentina revealed by a combined analysis of C- and RE-banding

Exceptional chromosomal variability makesCtenomys an excellent model for evolutionary cytogenetic analysis. Six species belonging to three evolutionary lineages were studied by means of restriction endonuclease and C-chromosome banding. The resulting banding patterns were used for comparative analysis of heterochromatin distribution on chromosomes. This combined analysis allowed intra- and inter-specific heterochromatin variability to be detected, groups of species belonging to different lineages to be characterized, and phylogenetic relationships hypothesized from other data to be supported. The “ancestral group”,Ctenomys pundti andC. talarum, share three types of heterochromatin, the most abundant of which was also found in C. aff.C. opimus, suggesting that the latter species also belongs to the “ancestral group”. Additionally, within the subspeciesC. t. talarum, putative chromosomal rearrangements distinguishing two of the three chromosomal races were identified. Two species belong to an “eastern lineage”,C. osvaldoreigi andC. rosendopascuali, and share only one type of heterochromatin homogeneously distributed across their karyotypes.C. latro, the only analyzed species from the “chacoan” lineage, showed three types of heterochromatin, one of them being that which characterizes the “eastern lineage”.C. aff.C. opimus, because of its low heterochromatin content, is the most primitive karyotype of the genus yet described. The heterochromatin variability showed by these species, reflecting the evolutionary divergence toward different heterochromatin types, may have diverged since the origin of the genus. Heterochromatin amplification is proposed as a trend withinCtenomys, occurring independently of chromosomal change in diploid numbers.     

A new species of sea anemone (Saccactis coliumensis n. sp.) living under hypoxic conditions on the central Chilean shelf

The new speciesSaccactis coliumensis is described with an emendation of genusSaccactis lager, 1911 (family Actiniidae). The taxonomic relations of the genus are discussed giving additional information onIsoulactis chilensis Carlgren, 1959 andIsocradactis magna sensu Carlgren, 1924. The terms “verrucae”, “vesicles” and “acrorhagi” are discussed and taxonomically valuated. The anemoneS. coliumensis lives in eutrophicated sediments on the central Chilean shelf that is at least temporarily under the impact of deoxygenated waters from the Peru-Chile-Subsurface-Current. The most conspicuous features of the new species (the ruff of delicate, gill-like vesicles beneath the tentacles and its thick pedal disc ectoderm with small, fragile spirocysts and cilia-like structures) may be considered adaptive in this peculiar habitat.     

Critical notice:<Emphasis Type="Italic"> Darwinian reductionism</Emphasis>

This notice provides a critical discussion of some of the issues from Alex Rosenberg’s Darwinian Reductionism, in particular proper functions and the relationship of proximate and ultimate biology, developmental programs and genocentrism, biological laws, the principle of natural selection as a fundamental law, genetic determinism, and the definition of “reductionism.”     

Coexistence of congeneric spiny lobsters on coral reefs: differences in conspecific aggregation patterns and their potential antipredator benefits

Den sharing by conspecific spiny lobsters (aggregation) is modulated by chemical attraction but may confer several, not necessarily mutually exclusive, antipredator byproduct benefits: a “guide effect”, which only benefits the individual attracted to a sheltered conspecific; a “dilution effect”, which reduces per-capita risk of predation simply through aggregation; or active “group defense”. Each potential benefit has a different set of predictors (relationships between aggregation and conspecific or predator densities), but conflicting results could suggest the simultaneous operation of more than one benefit. These predictions were tested for coexisting Panulirus guttatus (a reef-obligate) and Panulirus argus (a temporary reef-dweller) using data collected during 11 surveys on fixed sites over a coral reef in Mexico. P. guttatus greatly outnumbered P. argus, but P. argus showed a greater tendency to aggregate. All three benefits of den sharing operated for the more social P. argus, with “group defense” being of the most benefit for larger individuals, and the “guide” and “dilution” effects for smaller individuals recently immigrating into the reef habitat and sharing dens with larger conspecifics. P. guttatus did not display “group defense” and its aggregations appeared to be modulated by the interplay between attraction and aggressive behaviors. This species relied more on solitary crypticity, especially at larger sizes, but appeared to benefit from a “guide effect” at high conspecific densities. In experimental tanks, each species tended to aggregate when tested separately, but when tested jointly, aggregation among P. guttatus was significantly reduced. The experimental results reflect the differential patterns of aggregation between the fore-reef, where P. guttatus dominated, and the back-reef, where coexistence of both species was greater.     

The taxonomy of Vaccinium section Myrtillus (Ericaceae)

Phenetic analyses of 218 OTUs belonging toVaccinium sectionMyrtillus and scored for 13 characters generated five robust clusters.Vaccinium parvifolium is the most distinct cluster, followed by the “myrtillus-scoparium” complex, thenV. membranaceum, V. caespitosum, and the “ovalifolium-deliciosum” complex. Biosystematic studies suggest that the five clusters comprise seven taxa that possess many of the properties that define biological species. Indeed, the recognition of the seven taxa as species is supported by cytological, phenological, biogeographical and ecological as well as chemical data. A detailed taxonomic treatment for all these taxa is presented.     

Direct use values and passive use values: implications for conservation of large carnivores

We made a quantitative analysis of the responses of urban and rural residents in Sweden to arguments supporting and opposing conservation of large carnivores. The most important arguments in favour of conservation were: “I want them [the large carnivores] to exist in Sweden, even if I will never see any of them”, “Sweden should share the responsibility of conserving the large carnivores” and “We owe it [conservation of large carnivores] to future generations”. We found only small differences between rural and urban residents. For arguments opposing conservation, the difference between rural and urban areas was slightly greater. The most important arguments opposing conservation of large carnivores were: “They may have serious negative impact on livestock farming”, “They may have serious negative impact on reindeer husbandry” and “May inflict suffering on injured livestock”. We conclude that there seems to be less support for direct use values such as hunting, ecotourism or just experiencing large carnivores, this may imply that the minimum viable population size can be used as a long-term management goal for large carnivore populations, possibly with an exception for bears. We also conclude that a separate conservation or management plan is needed for each species, since the conflicts with human interests vary greatly between the different carnivore species.     

Dynamics of colony emigration in the ant Aphaenogaster senilis

In many social insect species, colonies frequently emigrate to a new nest. This requires the coordination of many individuals, and it puts the queen at risks of being lost or predated. We experimentally studied colony emigration in the ant Aphaenogaster senilis, who emigrates frequently and obligatorily reproduces by colony fission. As in other species, colony emigration was characterised by a synchronised relocation of workers. Foragers found the new nest site and triggered the relocation of the “inside” workers, which built up following a sigmoid curve. Unlike in Temnothorax, where workers are transported to the new nest, most individuals relocated by walking. The brood was transported around the middle of colony relocation, mostly by “inside” workers because they represent most of the workforce. The queen walked to the new nest at the middle of colony relocation, when the flow of ants to the new nest was maximal. Overall, this temporal dynamic of colony emigration is similar to that observed in other species. However, we argue that species-specific traits, such as whether workers are transported to the new nest or relocate by themselves, may affect parts of the process of colony emigration.     

Two-scale modelling of Saponaria bellidifolia Sm. (Caryophyllaceae) abundance on limestone outcrops from its northern range periphery (Southeastern Carpathians)

We modelled the effect of habitat heterogeneity on the abundance of the submediterranean Saponaria bellidifolia, a red list species in Romania. The study was designed at two scales: 100 and 0.5 m². At larger scale, generalized additive models and canonical correspondence analysis were used to model the density of ramets, whereas at microscale, binomial logistic regression was employed to model the species’ occurrence. S. bellidifolia abundance responded sensitively to habitat type (classified as “grassy”, “rocky” and “scree”), rather than to microclimatic variables. At both scales, habitat type was the best predictor of ramet abundance, followed by slope and vegetation cover. At 0.5 m², soil depth was also a good predictor of species occurrence. The data revealed that screes are the most suitable habitats for hosting relatively large populations of this rare species, because of occasional natural disturbances and presumably lower interspecific competition.     

Ontogeny, anatomy, and the problem of homology: Carl Gegenbaur and the American tradition of cell lineage studies

Summary In this paper we analyze Carl Gegenbaur’s conception of the relationship between embryology (“Ontogenie”) and comparative anatomy and his related ideas about homology. We argue that Gegenbaur’s conviction of the primacy of comparative anatomy and his careful consideration of caenogenesis led him to a more balanced view about the relationship between ontogeny and phylogeny than his good friend Ernst Haeckel. We also argue that Gegenbaur’s ideas about the centrality of comparative anatomy and his definitions of homology actually laid the conceptual foundations for Hans Spemann’s (1915) later analysis of homology. We also analyze Gegenbaur’s reception in the United States and how the discussions between E.B. Wilson and Edwin Conklin about the role of the “embryological criterion of homology” and the latter’s argument for an even earlier concept of cellular homology reflect the recurring theme of preformism in ontogeny, a theme that finds its modern equivalent in various genetic definitions of homology, only recently challenged by the emerging synthesis of evolutionary developmental biology. Finally, we conclude that Gegenbaur’s own careful methodological principles can serve as an important model for proponents of present day “evo-devo”, especially with respect to the integration of ontogeny with phylogeny embedded in comparative anatomy.     

Distribution and habitat preferences of two grapsid crab species in Mar Chiquita Lagoon (Province of Buenos Aires,Argentina)

Cyrtograpsus angulatus andChasmagnathus granulata (Grapsidae) are the two dominant decapod crustacean species in the outer parts of Mar Chiquita Lagoon, the southernmost in a series of coastal lagoons that occur along the temperate Atlantic coasts of South America. Distribution and habitat preferences (water and sediment type) in these crab species were studied in late spring. There is evidence of ontogenetic changes in habitat selection of both species. Recruitment ofC. angulatus takes place mainly in crevices of tube-building polychaete (Ficopomatus enigmaticus) “reefs” and, to a lesser extent, also in other protected microhabitats (under stones). In the latter, mostly somewhat larger juveniles were found, suggesting that these are used as a refuge for growing individuals. Adults are most frequently found on unprotected muddy and sandy beaches.C. angulatus was found in all parts of Mar Chiquita Lagoon, including freshwater, brackish, and marine habitats.C. granulata, in contrast, was restricted to the lower parts of the lagoon, where brackish water predominates and freshwater or marine conditions occur only exceptionally. It showed highest population density on “dry mud” flats and inSpartina densiflora grassland, where it can build stable burrows and where high contents of organic matter occur in the sediment. Such habitats are characterized by mixed populations of juveniles (including newly settled recruits) and adults, males and females (including a high percentage of ovigerous). Unstable “wet mud” as well as stony sand were found to be inhabited by chiefly adult populations, with only few ovigerous females. In “dry mud” flats, the proportion of males increased vertically with increasing level in the intertidal zone, showing a significantly increasing trend also in their average body size. These observations may be explained by higher resistance of males, in particular of large individuals, to desiccation, salinity, and temperature stress occurring in the upper intertidal. However, an opposite, or no such, tendency was found in the distribution of ovigerous and non-ovigerous females, respectively. With increasing distance from the water edge, salinity increased and pH decreased significantly inC. granulata burrows, whereas temperature showed no consistent tendency within the intertidal gradient. A highly significant linear relationship (r=−0.794; P<0.001) between salinity and pH in water from crab burrows is described. This regression line is significantly different from one that had been observed in water from the lagoon, indicating consistently lower pH values at any salinity level in burrow water. This is interpreted as a result of crab and/or microbial respiration.