A review of the centipede (Lithobiomorpha,Henicopidae, Lithobiidae) fauna of the Urals and Cis-Ural Area

The centipede fauna of the Urals and Cis-Ural Area includes 11 species of 4 genera. Two new species, Lithobius ruderalus Farzalieva and L. kozminykhi Farzalieva, are described. The species status of the damaged specimen of Hessebius was not determined. A new combination, Lithobius steppicus (Farzalieva et Zalesskaja, 2003) (of Monotarsobius), is proposed. Other species have been redescribed and illustrated. Reasons for a high endemism of the regional centipede fauna are discussed. The diversity of local faunas is relatively high in southern zones (5–7 species). The number of species decreases down to two in the middle taiga and mountains. Only one species, Lithobius curtipes, penetrates into the forest-steppe and tundra.     

Vertical profiles of microbial communities in perfluoroalkyl substance-contaminated soils

Poly- and perfluoroalkyl compounds (PFASs) are ubiquitous in the environment, but their influences on microbial community remain poorly known. The present study investigated the depth-related changes of archaeal and bacterial communities in PFAS-contaminated soils. The abundance and structure of microbial community were characterized using quantitative PCR and high-throughput sequencing, respectively. Microbial abundance changed considerably with soil depth. The richness and diversity of both bacterial and archaeal communities increased with soil depth. At each depth, bacterial community was more abundant and had higher richness and diversity than archaeal community. The structure of either bacterial or archaeal community displayed distinct vertical variations. Moreover, a higher content of perfluorooctane sulfonate (PFOS) could have a negative impact on bacterial richness and diversity. The rise of soil organic carbon content could increase bacterial abundance but lower the richness and diversity of both bacterial and archaeal communities. In addition, Proteobacteria, Actinobacteria, Chloroflexi, Cyanobacteria, and Acidobacteria were the major bacterial groups, while Thaumarchaeota, Euryarchaeota, and unclassified Archaea dominated in soil archaeal communities. PFASs could influence soil microbial community.     

Study of biological communities subject to imperfect detection: bias and precision of community <Emphasis Type="Italic">N</Emphasis>-mixture abundance models in small-sample situations

Community N-mixture abundance models for replicated counts provide a powerful and novel framework for drawing inferences related to species abundance within communities subject to imperfect detection. To assess the performance of these models, and to compare them to related community occupancy models in situations with marginal information, we used simulation to examine the effects of mean abundance \((\bar{\lambda }\): 0.1, 0.5, 1, 5), detection probability \((\bar{p}\): 0.1, 0.2, 0.5), and number of sampling sites (n _site : 10, 20, 40) and visits (n _visit : 2, 3, 4) on the bias and precision of species-level parameters (mean abundance and covariate effect) and a community-level parameter (species richness). Bias and imprecision of estimates decreased when any of the four variables \((\bar{\lambda }\), \(\bar{p}\), n _site , n _visit ) increased. Detection probability \(\bar{p}\) was most important for the estimates of mean abundance, while \(\bar{\lambda }\) was most influential for covariate effect and species richness estimates. For all parameters, increasing n _site was more beneficial than increasing n _visit . Minimal conditions for obtaining adequate performance of community abundance models were n _site  ≥ 20, \(\bar{p}\) ≥ 0.2, and \(\bar{\lambda }\) ≥ 0.5. At lower abundance, the performance of community abundance and community occupancy models as species richness estimators were comparable. We then used additive partitioning analysis to reveal that raw species counts can overestimate β diversity both of species richness and the Shannon index, while community abundance models yielded better estimates. Community N-mixture abundance models thus have great potential for use with community ecology or conservation applications provided that replicated counts are available.     

Continuous harvesting of a dominant bracken alters a cool-temperate montane grassland community and increases plant diversity in Nagano,Japan

Declines in biodiversity can be caused by intense land-use or by land abandonment. Traditional plant-gathering in Japan has declined or has often been abandoned in recent decades. However, little is known about how traditional plant-gathering affects the diversity, productivity, and composition of plant communities. Traditionally, bracken (Pteridium aquilinum subsp. japonicum) served as a natural resource in Japan, and people continue to harvest it in some places. We conducted a 4-year field experiment in a cool-temperate grassland on the Sugadaira Plateau, Nagano Prefecture, comparing a continuous harvesting treatment of the dominant Pteridium with a non-harvested control. We wanted to determine whether Pteridium harvesting would alter plant species richness, total productivity, and plant community composition. Local people harvested Pteridium shoots in a 1800 m² treatment area each year from 2011 to 2014. By 2014, species richness and diversity (Shannon index) had significantly increased while Pteridium abundance (number of shoots and biomass) had decreased in the harvest treatment when compared with the control. Total productivity, measured as combined aboveground biomass of all vascular plant species, was similar between the treatment and control; however, community composition differed. Harvested plots had a higher biomass of erect-formed, invasive and native species, but lower biomass of small-formed species when compared with the control. Our results suggest that traditional plant-gathering, such as periodic Pteridium harvesting can result in increases in plant diversity while total productivity is maintained. However, long-term monitoring is recommended to detect any subsequent undesirable changes in the community, such as increases in invasive species populations.     

Diversity of the Most Commonly Reported Facultative Symbionts in Two Closely-Related Aphids with Different Host Ranges

Richness and abundance of facultative symbionts vary strongly with aphid species and genotype, symbiont strain, host plant, biogeography, and a number of abiotic factors. Despite indications that aphids in the same ecological niche show similar levels of facultative symbiont richness, existing reports do not consider the potential role of host plants on aphid microbial community. Little is known about how oligophagy and polyphagy may be influenced by secondary symbiont distribution, mainly because studies on secondary symbiont diversity are biased towards polyphagous aphids from the Northern Hemisphere. Here, we demonstrate the richness and abundance of the most common aphid-associated facultative symbionts in two tropical aphid species, the oligophagous Aphis (Toxoptera) citricidus (Kirkaldy) (Hemiptera: Aphididae) and the polyphagous Aphis aurantii (Boyer de Fonscolombe) (Hemiptera: Aphididae). Aphis citricidus is restricted to Citrus sp. host plants and closely related genera, whereas A. aurantii successfully exploits a wide variety of host plants from different families. Both were collected in the same ecological niche and our data basically indicated the same richness of secondary symbionts, but the abundance at which secondary symbionts occurred was very distinct between the two species. Spiroplasma was the most abundant facultative symbiont associated with A. citricidus and A. aurantii in the ecological niche studied. Single and multiple secondary symbiont infections were observed, but diversity of multiple infections was particularly high in A. citricidus. We discuss our findings and suggest hypotheses to explain causes and consequences of the differences in secondary symbiont diversity observed between these two aphid species.     

Tree community structure reflects niche segregation of three parapatric squirrel monkey species (<Emphasis Type="Italic">Saimiri</Emphasis> spp.)

Integration between ecology and biogeography provides insights into how niche specialization affects the geographical distribution of species. Given that rivers are not effective barriers to dispersal in three parapatric species of squirrel monkeys (Saimiri vanzolinii, S. cassiquiarensis and S. macrodon) inhabiting floodplain forests of Central Amazonia, we tested whether forest structure and tree diversity may explain species differences in niche specialization and spatial segregation. We sampled 6617 trees of 326 species in three habitats (high várzea, low várzea and chavascal) used by three Saimiri species, and estimated tree species richness in each of them. For each tree, we measured variables known to influence habitat use in primates, such as crown area and presence of lianas, epiphytes and hemi-epiphytes. We used ANOVA to compare these variables and performed multivariate analyses (NMDS, ANOSIM and SIMPER) to evaluate dissimilarities in forest structure among each habitat inhabited by the three Saimiri species. We identified differences in the tree species richness, crown area and presence of lianas, epiphytes and hemi-epiphytes between the three habitats for all Saimiri species. NMDS demonstrated that areas of high and low várzeas occupied by S. vanzolinii were clearly separated from the other species. We also found that different plant species contributed to dissimilarity among Saimiri ranges. Our findings support the hypothesis that tree community structure may promote niche specialization and spatial segregation among primates. We discuss how these patterns could have been favored by historical changes in forest flood patterns, the evolutionary history of Saimiri spp., and past competition.     

<Emphasis Type="Italic">Pinus contorta</Emphasis> invasion into treeless steppe reduces species richness and alters species traits of the local community

Pinus contorta, one of the most invasive tree species in the world, has been proposed as a model species for improving our understanding of invasion ecology. In this study, we assessed the impact of P. contorta invasions on the species richness, diversity and species traits of a resident treeless steppe community. In a Pinus contorta invasion gradient (Patagonia, Chile), we surveyed vegetation from high canopy closure pine invasion to treeless steppe, and computed species richness, diversity and Sørensen similarity indexes. For all species, we determined functional trait values from the literature, data bases, and personal observations. Species richness and diversity were related to canopy cover (a proxy for invasion intensity) using generalized linear mixed-effects models. Changes in species traits due to canopy cover were analyzed using RLQ ordination analysis and the fourth-corner analysis. We found that Pinus contorta canopy cover significantly reduced the number of native species by 70 %, implying a strong effect on species exclusion. A few native species, however, prevail in the novel conditions (e.g. Baccharis magellanica, Acaena integerrima). Species traits changed significantly with increasing pine canopy cover, where P. contorta promoted the existence of traits related to shade-tolerance and conservative reproductive strategies. We conclude that the negative impacts of Pinus contorta into the treeless steppe, including a reduction in the number of species and the shifting to traits adapted to tolerate shade and associated with conservative reproductive strategies, can have severe implications for the conservation of biodiversity and ecosystem functioning where it invades.     

Methanogenic community compositions in surface sediment of freshwater aquaculture ponds and the influencing factors

Aquaculture ponds represent ecologically relevant environments to study the community composition and diversity of methanogenic assemblages, as well as their interactions with cultivated species and chemical indicators. In this study, aquaculture ponds with crab (Eriocheir sinensis), oriental river prawn (Macrobrachium nipponense), perch (Micropterus salmonides) and Wuchang fish (Parabramis pekinensis) were sampled, and Illumina high-throughput sequencing was used to investigate the methanogenic communities. The results revealed that the abundant methanogenic orders in surface sediment were Methanomicrobiales, Methanosarcinales and Methanocellales. The relative abundance of Methanocellales was higher in crab and prawn ponds as compared to other ponds. Methanogenic 16S rRNA gene abundance and beta diversity of the community was affected by the cultivated species. Methanogenic communities in aquaculture ponds with higher contents of total nitrogen and organic matter had decreased species richness, while those with higher contents of ammonia and nitrite had an overall decreased abundance of methanogens and their respective diversities. Overall, in addition to the differences in cultivated species, the consequent differences in farming practices including the types and amounts of feeds used, the contents of total nitrogen, organic matter, ammonia and nitrite could all influence the methanogenic community in surface sediment of aquaculture ponds.     

Diversity and abundance of coccinellids (Coleoptera: Coccinellidae) on trees in parks and tree rows of Belgrade

Harmonia axyridis is an invasive coccinellid species that was first recorded in Serbia in 2008. In order to establish whether after its arrival it became the dominant coccinellid species, we investigated the diversity and abundance of coccinelids on trees in parks and tree rows of Belgrade during 2015 and 2016. Thirteen coccinellid species were recorded in these investigations. Frequently occurring among them were Adalia bipunctata, A. decempunctata, Coccinella septempunctata, Exochomus quadripustulatus, Harmonia axyridis, H. quadripunctata, Oenopia conglobata, and Popylea quatuordecimpunctata. All of them had different dynamics of appearance during the vegetation. As a result of this, the values of their dominance in the coccinellid community constantly changed. However, only in the cases of H. axyridis, O. conglobata, and C. septempunctata were those values high enough for us to be able to say that they were dominant in terms of abundance during a certain period. Although the amounts of summer precipitation in Serbia were very different during 2015 and 2016, the trends of changes in the diversity of coccinellids throughout the growing season in these two years were similar.     

Effect of long-term different fertilization on bacterial community structures and diversity in citrus orchard soil of volcanic ash

This study was conducted to assess bacterial species richness, diversity and community distribution according to different fertilization regimes for 16 years in citrus orchard soil of volcanic ash. Soil samples were collected and analyzed from Compost (cattle manure, 2,000 kg/10a), 1/2 NPK+compost (14-20-14+2,000 kg/10a), NPK+compost (28-40-28+2,000 kg/10a), NPK (28-40-28 kg/10a), 3 NPK (84-120-84 kg/10a), and Control (no fertilization) plot which have been managed in the same manners with compost and different amount of chemical fertilization. The range of pyrosequencing reads and OTUs were 4,687–7,330 and 1,790–3,695, respectively. Species richness estimates such as Ace, Chao1, and Shannon index were higher in 1/2 NPK+compost than other treatments, which were 15,202, 9,112, 7.7, respectively. Dominant bacterial groups at level of phylum were Proteobacteria, Acidobacteria, and Actinobacteria. Those were occupied at 70.9% in 1/2 NPK+compost. Dominant bacterial groups at level of genus were Pseudolabrys, Bradyrhizobium, and Acidobacteria. Those were distributed at 14.4% of a total of bacteria in Compost. Soil pH displayed significantly closely related to bacterial species richness estimates such as Ace, Chao1 (p<0.05) and Shannon index (p<0.01). However, it showed the negative correlation with exchangeable aluminum contents (p<0.05). In conclusion, diversity of bacterial community in citrus orchard soil was affected by fertilization management, soil pH changes and characteristics of volcanic ash.     

The high diversity of <Emphasis Type="Italic">Lotus corniculatus</Emphasis> endosymbionts in soils of northwest Spain

The diversity of rhizobia that establish symbiosis with Lotus corniculatus has scarcely been studied. Several species of Mesorhizobium are endosymbionts of this legume, including Mesorhizobium loti, the type species of this genus. We analysed the genetic diversity of strains nodulating Lotus corniculatus in Northwest Spain and ten different RAPD patterns were identified among 22 isolates. The phylogenetic analysis of the 16S rRNA gene showed that the isolated strains belong to four divergent phylogenetic groups within the genus Mesorhizobium. These phylogenetic groups are widely distributed worldwide and the strains nodulate L. corniculatus in several countries of Europe, America and Asia. Three of the groups include the currently described Mesorhizobium species M. loti, M. erdmanii and M. jarvisii which are L. corniculatus endosymbionts. An analysis of the recA and atpD genes showed that our strains belong to several clusters, one of them very closely related to M. jarvisii and the remanining ones phylogenetically divergent from all currently described Mesorhizobium species. Some of these clusters include L. corniculatus nodulating strains isolated in Europe, America and Asia, although the recA and atpD genes have been sequenced in only a few L. corniculatus endosymbionts. The results of this study revealed great phylogenetic diversity of strains nodulating L. corniculatus, allowing us to predict that even more diversity will be discovered as further ecosystems are investigated.     

Evidence for genetic erosion of a California native tree, <Emphasis Type="Italic">Platanus racemosa</Emphasis>, via recent,ongoing introgressive hybridization with an introduced ornamental species

When non-native, genetically diverse species are introduced, hybridization with native congeners may erode the genetic composition of local species, perhaps even resulting in extinction. While such events may lead to adverse consequences at the community and ecosystem level, few studies exist on ecologically important tree species. In the genus Platanus, introgressive hybridization is widespread, and one common ornamental species, introduced to California during the late 19th century, is itself a hybrid. Our microsatellite analysis of more than 400 Platanus trees from north-central California reveals a complex pattern of invasion and hybridization in an age-structured population. By using size as a proxy for age, we have demonstrated that the Platanus population of north-central California has recently gained genetic diversity and effective population size. Principal coordinate analysis (PCoA) and genetic admixture analysis (STRUCTURE) both reveal a strong differentiation of genotypes into two main genetic clusters, with a large number of admixed genotypes. One of the genetic clusters identified is heavily biased towards younger trees, including samples from locations with relatively recently planted ornamental trees likely to be P. × hispanica (formerly known as P. × acerifolia). We conclude that the two genetic clusters correspond to the native P. racemosa and the introduced invasive hybrid species P. × hispanica. Additional hybridization between the invasive ornamental and the native species has occurred in California, and recent hybrid trees are more likely to be younger than trees without admixture. Our findings suggest that the observed increase in genetic diversity among California Platanus is due to rampant ongoing introgression, which may be threatening the continued genetic distinctiveness of the native species. This is cause for concern from a conservation standpoint, due to a direct loss of genetic distinctiveness, and a potential reduction in habitat value of associated species.     

Plant traits shape the effects of tidal flooding on soil and plant communities in saltmarshes

Saltmarshes are recognised worldwide to be among the most complex ecosystems, where several environmental factors concur to sustain their fragile functioning. Among them, soil–plant interactions are pivotal but often overlooked. The aim of this work was to use a structural equation modelling (SEM) approach to get new insight into soil–plant interactions, focusing on the effect of plant traits and abundance on soil, and test the effect of soil and/or plants on the entire community, monitoring changes in plant richness. The target halophytes Limonium narbonense and Sarcocornia fruticosa were sampled in the Marano and Grado lagoon (northern Adriatic Sea). Basal leaves of L. narbonense and green shoots of S. fruticosa were used to estimate plant growth, while the abundance of both species was used as a proxy of species competition. SEM was applied to test relationships between predictors and response variables in a single causal network. The flooding period (hydroperiod) negatively affected plant growth and soil properties, whereas plants decreased the intensity of soil reduction. Flooding did not directly affect species abundance or diversity, whose changes were instead driven by plant traits. The direct relationships between plant traits and species richness highlighted that species competition could be even more important than environmental stresses in defining plant diversity and zonation.     

Endophytic aquatic hyphomycetes in roots of riparian tree species of two Western Ghat streams

Bubble chamber incubation of surface sterilized segments of root bark and xylem of 10 riparian tree species of the Sampaje (475–500 m asl) and V?Badaga (765–800 m asl) stream reaches of the Western Ghats yielded 20 species of endophytic aquatic hyphomycetes. Anguillospora crassa, A. longissima and Cylindrocarpon sp. were among the top five species in streams. A two-way ANOVA showed significantly higher species richness and counts of conidium in the tree species of Sampaje compared to V?Badaga (p < 0.001), while two variables were not significantly different between bark and xylem. The total number of species recovered was slightly higher in bark than in xylem (14–19 vs. 13–17 spp.) and the average species richness between tissues did not differ significantly except for one tree species (Madhuca neriifolia: p < 0.05). The release of conidia from bark of only three tree species was significantly higher than from xylem (M. neriifolia and Canarium strictum: p < 0.05; Vateria indica: p < 0.01). Sørensen’s similarity index for bark as well as xylem between tree species was higher in Sampaje stream than in V?Badaga stream (0.45–0.78 vs. 0.25–0.61). The diversity of aquatic hyphomycetes in bark and xylem was higher in the trees of Sampaje than V?Badaga (3.1–3.3 vs. 2.7). A cluster analysis of aquatic hyphomycetes in bark and xylem resulted in two groups coinciding with the two streams. The results of this study revealed that assemblage and diversity of endophytic aquatic hyphomycetes in riparian tree roots are high in the mid-altitude Sampaje stream as previously documented for saprotrophic aquatic hyphomycetes.     

Effect of vegetation cover on the abundance and diversity of ladybirds (Coccinellidae) assemblages in a peat bog

Predaceous ladybirds are important natural enemies of many insect pests in terrestrial ecosystems such as peatlands, which are habitats for specialized cold-adapted plants. Ladybird assemblages of pristine peat bogs have not yet been assessed. In total, 15 ladybird species were recorded in peat bog in Belarus by using entomological sweep net. The present study shows low diversity, evenness and species richness of ladybird assemblages. However, a small number of species were present in high numbers. These are Coccinella hieroglyphica, Chilocorus bipustulatus, Coccinulla qutuordecimpustulata and Hippodamia tredecimpunctata. Ladybird abundance was positively related to shrub cover and number of vascular plant species, and negatively related to herb cover. In terms of ladybird diversity, only shrub cover had a significant negative effect.     

Seed Dispersal by Primates and Implications for the Conservation of a Biodiversity Hotspot,the Atlantic Forest of South America

Primates play a fundamental role as seed dispersers, particularly in tropical rainforests. Because defaunation and fragmentation are leading several primate species to local extinction, it is fundamental to understand the role of primates as effective seed dispersers. Here we present a systematic review of studies of seed dispersal by primates in a biodiversity hotspot, the Atlantic Forest of South America, to 1) highlight gaps in our knowledge, 2) determine species richness and proportion of seed species dispersed, and 3) test the relationship between primate body size and the size of dispersed species. Our review found 79 studies of the diet of six ecospecies (Callithrix, Leontopithecus, Callicebus, Sapajus, Alouatta, Brachyteles) but only 20 of these report information on seed dispersal, and none of these are on Callithrix or Callicebus. We found a strong bias in the distribution of species and regions, with most of the studies concentrated in southeastern Brazil. All ecospecies dispersed a large proportion of the seed species they handled (72.1–93.6%). Brachyteles dispersed the highest diversity of plants (N = 73), followed by Sapajus (N = 66), Leontopithecus (N = 49), and Alouatta (N = 26). Although we found no significant relationship between primate body size and the size of seeds dispersed, Brachyteles disperse a higher diversity of large-seeded species than smaller-bodied primates. These results suggest that the local extinction of large primate species may lead to dramatic changes in the plant community, as many large-seeded plants are inaccessible to smaller arboreal frugivores. We propose guidelines for future research on primate seed dispersal to enable the evaluation of seed dispersal effectiveness and to improve our understanding of the fundamental role of primates in this key ecosystem process.     

Seasonal and altitude effects on the structure of arthropod communities associated with <Emphasis Type="Italic">Tillandsia violacea</Emphasis> Baker (Bromeliaceae) in a temperate forest of Mexico

The canopy of forests has been considered “the last biotic frontier,” and study of its elements is very important in explaining the global functionality in ecosystems. Epiphytic plants and arthropods are essential elements in canopy habitats, and their relationships have been studied in order to understand the high diversity in tropical forests. Nevertheless, there are few studies on this development in temperate forests. The arthropod community was studied during the rainy and dry seasons at two altitudes, and a total of 240 T. violacea plants of three sizes were collected from Abies religiosa and Quercus spp. host trees. A total of 163,043 arthropods were collected and about 200 morphospecies identified. The highest abundance was obtained during the dry season, while high diversity was found during the rainy season. There was a significant effect of plant size, host trees and collecting season on abundance and diversity, and there were seasonal variations in community composition. The community hosted on A. religiosa epiphytes showed higher abundance and density than that of Quercus.     

Typification of urban habitats,with ant assemblages of Moscow city taken as an example

A typification of Moscow city habitats is undertaken, based on their consideration as mosaic of patches and using such fundamental parameters as habitat origin (soil type), floristic composition, vegetation structure, and area of the biotopes. Altogether, 11 habitat types are distinguished: lawns, agrocenoses, xerophytic and mesophytic meadows, tall weeds, boulevards, small degenerative parks, small oppressed artificial parks, landscape parks, forest parks, and technocenoses. Such a classification is primarily useful for studying ants. The present paper describes the basic structure of ant assemblages in most types of urban biocenoses. The main pool of Moscow’s ant species ranked by their occurrence is as follows: Lasius niger (87%), Myrmica rugulosa (44%), Myrmica rubra (33%), Formica cunicularia (11%), Myrmica ruginodis (10%), etc. Leaf litter removal with a rake was shown to negatively affect the numbers, biomass, and species diversity of ant communities in urban areas with trees. The most stable two-species ant community revealed in Moscow City, termed an “elementary urban community,” consists of L. niger and M. rugulosa, with the former always outnumbering the latter.     

Facilitation of plant species richness and endangered species by a tussock grass in a moist tall grassland revealed using hierarchical Bayesian analysis

Using hierarchical Bayesian analysis, we tested the hypothesis that a perennial tussock grass, Ischaemum aristatum var. glaucum, facilitates the species diversity of vegetation and the regeneration of individual native vascular plants in Ukishima Marsh, a moist tall grassland of eastern Japan. We analyzed microscale distribution patterns of sympatric plant species in response to ground height. Both the species richness of the whole plant assemblage and the occurrence of many native vascular plants, including two endangered species, were positively correlated with ground elevation, which was directly mediated by I. aristatum var. glaucum tussocks and/or the occurrence of mosses on tussocks. Susceptibility to late spring inundation of microsites on the tussocks was significantly lower than that on bare ground. These results suggest that the facilitation by I. aristatum var. glaucum contributes to maintaining the high species richness of the marsh. Consideration of the facilitation among native vascular plants is necessary for establishing sound conservation plans of wetland vegetation.