A suite of falcon single-locus minisatellite probes: a powerful alternative to DNA fingerprinting

Nine falcon single-locus minisatellite probes have been cloned, characterized and shown to provide a powerful alternative to multilocus DNA fingerprinting for determining the parentage of broods of young. Eight clones derived from size-selected peregrine Falco peregrinus and merlin F. columbarius charomid libraries were found to detect single minisatellite loci in all tested members of the genus Falco . A further clone (c Fti 1) randomly selected from a kestrel F. tinnunculus library identified a single locus in other members of the genus and certain species of the Accipitridae. The nine loci display a mean heterozygosity of 88% and considerable allelic diversity in the peregrine and merlin. Pedigree analysis provides evidence consistent with the clustering of minisatellites in linkage groups that are conserved between species. Mutations were observed at five loci among families of peregrines and kestrels. Composite profiles produced with this suite of probes provide an excellent means of confirming identity and parentage. The use of profiling for investigating familial relationships, population dynamics and combating the illegal trade in wild falcons is discussed.     

Red-breasted goose colonies on the Taimyr Peninsula: Factors responsible for the proximity of goose nests to nests of peregrine falcons,rough-legged buzzards,and snowy owls

Red-breasted goose colonies have been studied near Medusa Bay (73°21′N, 80°32′E), on the northwestern Taimyr Peninsula, and along the Agapa River (70°11′N, 86°15′E) down to its mouth (71°26′N, 89° 13′E), in the central Taimyr Peninsula. Red-breasted geese nesting near peregrine falcons are protected by the falcons from arctic foxes; however, they are sometimes attacked by the falcons themselves. In the colonies near peregrine falcon nests, the vast majority of goose nests were situated no farther than 100 m from the falcon nest. When food is abundant, falcons protect a larger area around their nest. The distance between the falcon nest and the surrounding goose nests is inversely related to the falcon’s activity. In years of higher falcon activity, falcons prevent red-breasted geese from nesting as close to their nest as in years of lower falcon activity. Additional stimuli are required for red-breasted geese to form colonies near rough-legged buzzard nests. The distance between snowy owl nests and red-breasted goose nests was smaller when arctic foxes were abundant than when they were scarce.     

Legacy or colonization? Posteruption establishment of peregrine falcons (Falco peregrinus) on a volcanically active subarctic island

How populations and communities reassemble following disturbances are affected by a number of factors, with the arrival order of founding populations often having a profound influence on later populations and community structure. Kasatochi Island is a small volcano located in the central Aleutian archipelago that erupted violently August 8, 2008, sterilizing the island of avian biodiversity. Prior to the eruption, Kasatochi was the center of abundance for breeding seabirds in the central Aleutian Islands and supported several breeding pairs of peregrine falcons (Falco peregrinus). We examined the reestablishment of peregrine falcons on Kasatochi by evaluating the genetic relatedness among legacy samples collected in 2006 to those collected posteruption and to other falcons breeding along the archipelago. No genotypes found in posteruption samples were identical to genotypes collected from pre‐eruption samples. However, genetic analyses suggest that individuals closely related to peregrine falcons occupying pre‐eruption Kasatochi returned following the eruption and successfully fledged young; thus, a genetic legacy of pre‐eruption falcons was present on posteruption Kasatochi Island. We hypothesize that the rapid reestablishment of peregrine falcons on Kasatochi was likely facilitated by behavioral characteristics of peregrine falcons breeding in the Aleutian Islands, such as year‐round residency and breeding site fidelity, the presence of an abundant food source (seabirds), and limited vegetation requirements by seabirds and falcons.     

Climatic conditions during outward migration affect apparent survival of an arctic top predator,the peregrine falcon Falco peregrinus

In long‐lived species, population growth rate is highly sensitive to changes in adult survival. Despite the growing concerns regarding recent climate changes, few studies have investigated the effect of climatic conditions on survival in long‐lived wildlife that are either resident or breed in the Arctic. In this study, we evaluated the effect of climate across the annual life cycle (breeding, outward migration, wintering, and inward migration) on apparent annual survival of arctic‐breeding peregrine falcons. From 1982 to 2008, peregrine falcons breeding near Rankin Inlet, Nunavut, Canada were monitored, in part, to assess apparent annual survival (the product of true survival and site fidelity) using re‐observations of marked individuals. Our study indicated that apparent annual survival of adult peregrine falcons was correlated with indices of climatic conditions during outward migration (i.e., flight from the Arctic breeding grounds). These climatic indices (fall NAO of the current year and fall NAO with a lag of one year) explained 35% of the temporal variation in apparent annual survival of peregrine falcons. Our results suggest that this top‐predator is vulnerable to weather‐related environmental conditions encountered during fall migration.     

Breeding success of New Zealand falcons (

Productivity data on the New Zealand falcon (Falco novaeseelandiae) were collected from 87 nest sites in Kaingaroa pine plantation during three breeding seasons, 2003 to 2006. On average, 1.81 chicks were successfully fledged per nest, with young reared successfully at 71% of nests. Breeding occurred between August and March, with most eggs laid before December and most chicks fledged by February. Fifteen percent of nests were depredated, 9% contained eggs that failed to develop and 4% failed owing to forestry operations disturbing or destroying nests. No negative impact of 1080 bait or of desiccant or release spray application was recorded on falcon productivity. The population of falcons in Kaingaroa Forest increased during a period of pest control using 1080 bait so we see no reason to discontinue its use. Although impacts from forestry operations were low and restricted to land preparation and harvesting operations, there is potential for adverse impacts to increase. Mechanical forestry operations can continue without negative impacts by avoiding a buffer zone of 100?200 m around an active falcon nest.     

White-fronted and bean geese breeding near snowy owls,peregrine falcons,and rough-legged buzzards at the Taimyr Peninsula

Studies were carried out in 2000–2007 near Medusa Bay (73°21′N, 80°32′ E) and along the Agapa River (from 70°11′N, 86°15′ E. down to the mouth 71°26′ N, 89°13′ E), in the northwestern and central parts of the Taimyr Peninsula. White-fronted goose nests are usually spread in the tundra or placed in 1–3 nest colonies near nests or staging points of snowy owls, peregrine falcons, or rough-legged buzzards. The intent of white-fronted geese to breed near birds of prey or owls increases sharply when arctic fox numbers are high. In the area near Medusa Bay, white-fronted geese nest much closer to peregrine falcon nests than in the area along the Agra River. At the latter location, white-fronted geese lose the competition to red-breasted geese, which are more numerous here. Bean geese, in spite of their greater size and ability to protect their nests against arctic foxes, really tend to breed near peregrine falcons or buzzards, where they manage to compete with red-breasted geese.     

A standardized microsatellite marker panel for parentage and kinship analyses in channel catfish,Ictalurus punctatus

This research was designed to produce a standardized set of microsatellite loci for parentage and kinship analyses in channel catfish, the leading species of US aquaculture. Three panels of five to six markers each were developed that contained a total of two dinucleotide‐, eight trinucleotide‐ and seven tetranucleotide‐microsatellite loci respectively. The loci had a range of nine to 31 alleles per locus in an outbred population. Based on the allele frequencies measured in commercial randomly bred broodstock, the combined probability of non‐exclusion of an unrelated candidate parent pair was 5.36e‐18. The combined probability of non‐exclusion of unrelated identical genotypes was 2.58e‐08. The microsatellite panels were validated by parentage and kinship evaluation in three populations. A total of 697 spawns were collected from matings of outbred broodstock over three spawning seasons, and parents were determined unambiguously for all but three spawns. Genotype analysis also enabled the identification of half‐sibling and full‐sibling families produced by pond spawning. In a second experiment, parentage was unambiguously determined in nine spawns from a population consisting of broodstock derived from only four families. A third experiment demonstrated that all but one of 374 individuals from 10 full‐sibling families could be assigned to a family after coculture in an earthen pond for 1 year. The standardized microsatellite panels enable the development of pedigreed catfish populations and large‐scale performance evaluations in common environments to support the genetic improvement of cultured catfish through selective breeding.     

Landscape heterogeneity drives intra‐population niche variation and reproduction in an arctic top predator

While intra‐population variability in resource use is ubiquitous, little is known of how this measure of niche diversity varies in space and its role in population dynamics. Here we examined how heterogeneous breeding environments can structure intra‐population niche variation in both resource use and reproductive output. We investigated intra‐population niche variation in the Arctic tundra ecosystem, studying peregrine falcon (Falco peregrinus tundrius, White) breeding within a terrestrial‐marine gradient near Rankin Inlet, Nunavut, Canada. Using stable isotope analysis, we found that intra‐population niches varied at the individual level; we examined within‐nest and among‐nest variation, though only the latter varied along the terrestrial‐marine gradient (i.e., increased among‐nest variability among birds nesting within the marine environment, indicating higher degree of specialization). Terrestrial prey species (small herbivores and insectivores) were consumed by virtually all falcons. Falcons nesting within the marine environment made use of marine prey (sea birds), but depended heavily on terrestrial prey (up to 90% of the diet). Using 28‐years of peregrine falcon nesting data, we found a positive relationship between the proportion of terrestrial habitat surrounding nest sites and annual nestling production, but no relationship with the likelihood of successfully rearing at least one nestling reaching 25 days old. Annually, successful inland breeders raised 0.47 more young on average compared to offshore breeders, which yields potential fitness consequences for this long‐living species. The analyses of niche and reproductive success suggest a potential breeding cost for accessing distant terrestrial prey, perhaps due to additional traveling costs, for those individuals with marine nest site locations. Our study indicates how landscape heterogeneity can generate proximate (niche variation) and ultimate (reproduction) consequences on a population of generalist predator. We also show that within‐individual and among‐individual variation are not mutually exclusive, but can simultaneously arise and structure intra‐population niche variation.     

Lack of genetic polymorphism among peregrine falcons Falco peregrinus of Fiji

We compared levels of genetic diversity and isolation among peregrine falcons Falco peregrinus from two South Pacific island complexes (Fiji and Vanuatu: F. p. nesiotes), relative to other island and mainland populations. Fragment data from 12 microsatellite loci and sequence information from the control region of the mitochondrial DNA indicated levels of genetic variation in the South Pacific populations were lower than other island and mainland populations. Indeed, diversity varied from extremely low (Vanuatu) to completely absent (Fiji). We find little support for a hypothesis that populations on Fiji or Vanuatu were colonized via Australia. The complete lack of polymorphism in peregrine falcons of Fiji is remarkable, and to our knowledge has not been observed in a natural avian population. This lack of polymorphism, and the inability to test for decrease in polymorphism using museum samples, precludes testing whether the lack of genetic diversity in the population on Fiji is due to a recent bottleneck, or sustained isolation over evolutionary time. Increased fertility in eggs of Fiji peregrines upon outbreeding with males from other areas is consistent with inbreeding depression within a population typified by heterozygote deficiency.     

Use of Three Different Marker Systems to Estimate Genetic Diversity of Indian Elite Rice Varieties

Genetic diversity among 42 Indian elite rice varieties, which is important for selection of parents for conventional breeding and hybrid program, was evaluated using three different types of DNA markers and parentage analysis. Random amplified polymorphic DNA (RAPD), inter-simple sequence repeat (ISSR) and sequence tagged microsatellite site (STMS) markers resulted in mean heterozygosity values of 0.429, 0.675 and 0.882 over all loci, respectively, and marker index values of 2.21, 4.05 and 5.49, respectively. The three molecular marker systems together provide wider genome coverage and, therefore, would be a better indicator of the genetic relationships among the 42 elite rice cultivars than those revealed using individual molecular markers. A total of 153 bands (91%) were polymorphic out of 168 bands amplified, considering all the markers together. The average genetic similarity coefficient across all the 861 cultivar pairs was 0.70 while the average coefficient of parentage was 0.10. Cluster analysis revealed that there was a very poor correlation (correlation coefficient <0.1) between dendrograms generated using coefficients of parentage and molecular marker generated genetic similarities, which can be attributed to selection pressure, genetic drift, sampling of loci and unknown relationships among supposedly unrelated ancestors. This revised version was published online in July 2006 with corrections to the Cover Date.     

Translocation of threatened New Zealand falcons to vineyards increases nest attendance, brooding and feeding rates

Anthropogenic landscapes can be rich in resources, and may in some cases provide potential habitat for species whose natural habitat has declined. We used remote videography to assess whether reintroducing individuals of the threatened New Zealand falcon Falco novaeseelandiae into a highly modified agricultural habitat affected the feeding rates of breeding falcons or related breeding behavior such as nest attendance and brooding rates. Over 2,800 recording hours of footage were used to compare the behavior of falcons living in six natural nests (in unmanaged, hilly terrain between 4 km and 20 km from the nearest vineyard), with that of four breeding falcon pairs that had been transported into vineyards and nested within 500 m of the nearest vineyard. Falcons in vineyard nests had higher feeding rates, higher nest attendance, and higher brooding rates. As chick age increased, parents in vineyard nests fed chicks a greater amount of total prey and larger prey items on average than did parents in hill nests. Parents with larger broods brought in larger prey items and a greater total sum of prey biomass. Nevertheless, chicks in nests containing siblings received less daily biomass per individual than single chicks. Some of these results can be attributed to the supplementary feeding of falcons in vineyards. However, even after removing supplementary food from our analysis, falcons in vineyards still fed larger prey items to chicks than did parents in hill nests, suggesting that the anthropogenic habitat may be a viable source of quality food. Although agricultural regions globally are rarely associated with raptor conservation, these results suggest that translocating New Zealand falcons into vineyards has potential for the conservation of this species.     

The role of pigeon consumption in the population dynamics and breeding performance of a peregrine falcon (<Emphasis Type="Italic">Falco peregrinus</Emphasis>) population: conservation implications

In this paper, we describe and analyze the diet of peregrine falcons during a long-term period (1982–2002). A combination of direct observations of prey brought to nests, prey remains, and regurgitated pellets were used to calculate diet diversity and dietary overlap between peregrine pairs. We also examined diet diversity in relation to breeding performance. All peregrine pairs fed mainly on birds, with pigeons the most common prey. An increase in pigeon availability has been associated with both an increase in population size and an increase in breeding performance (measured as the average productivity of pairs per year) of a small peregrine falcon population in eastern Spain. Average productivity was lower when dietary breadth was higher. We speculate that our results were the synergistic effect of declining persecution and increased pigeon availability through increased popularity of keeping racing pigeons. There is a conflict of interests between pigeon fanciers and peregrine conservation. As a consequence, this could result to an increased risk of mortality by direct persecution. In accordance with this, conservation measures aimed at preventing direct persecution are encouraged.     

Malaria in a captively-produced F1 gyrfalcon and in two F. peregrine falcons

One Falco rusticolus and two of 24 Falco peregrinus were positive for Plasmodium relictum. Sixteen percent of the erythrocytes (RBC) of the gyrfalcon were parasitized. Following treatment with chloroquine the parasite burden was dramatically reduced (to less than 0.01%). Infection in peregrine falcons was low (0.01-0.4% RBCs were parasitized). This is the second report of Plasmodium in the gyrfalcon and the first report in the peregrine falcon.     

Analysis of microsatellites and parentage testing in saltwater crocodiles

Fifteen microsatellite loci were evaluated in farmed saltwater crocodiles for use in parentage testing. One marker (C391) could not be amplied. For the remaining 14, the number of alleles per locus ranged from two to 16, and the observed heterozygosities ranged from 0.219 to 0.875. The cumulative exclusion probability for all 14 loci was .9988. the 11 loci that showed the greatest level of polymorphism were used for parentage testing, with an exclusion probability of .9980. With these 11 markers on 107 juveniles from 16 known breeding pairs, a 5.6% pedigree error rate was detected. This level of pedigree error, if consistent, could have an impact on the accuracy of gentic parameter and breeding value estimation. The usefulness of these markers was also evaluated for assigning parentage in situations where maternity, paternity, or both may not be known. In these situations, a 2% error in parentage assignment was predicted. It is therefore recommended that more micro-satellite markers be used in these situations. The use of these microsatellite markers will broaden the scope of a breeding program, allowing progeny to be tested from adults maintained in large breeding lagoons for selection as future breeding animals.     

Parentage assignment of the mud crab (Scylla paramamosain) based on microsatellite markers

In this study, microsatellite markers were employed to identify the parentage relationship in Scylla paramamosain. The exclusion probability of loci was found to be related with the level of their heterozygosity. When no parent information or only one parent information was available, the exclusion probability ranged from 22.0% to 56.6% and from 41.2% to 73.1%, with the combined exclusion probability for ten loci being 97.0% and 99.8%, respectively. The cumulative assignment success rate was 100% when no parent information was available using seven most informative microsatellite markers. Moreover, the power of the seven microsatellite markers for parentage assignment was tested by a double-blind test, which indicated that 95% of the progeny can be correctly assigned to their parents. This study provided a microsatellite-based approach for parentage assignment in S. paramamosain that will be useful for investigation of genetic background and molecular marker-assisted selective breeding in this important crab species.     

Complete mitochondrial genome of the peregrine falcon Falco peregrinus (Aves, Falconiformes, Falconidae): genetic differences between the two individuals

The peregrine falcon Falco peregrinus (Aves, Falconiformes, Falconidae) is one of the most common and widespread raptor species in the world. Here, the complete mitochondrial genome of F. peregrinus from Korea, which is one of the breeding ranges, was sequenced and characterized in detail.     

Site fidelity and home range variation during the breeding season of peregrine falcons (Falco peregrinus) in Yamal,Russia

Many different ecological factors affecting the size, use, and spatial configuration of home ranges have been investigated, yet the chronology of the breeding cycle has been relatively under studied. Here, we studied peregrine falcons (Falco peregrinus) to describe variation in home range within and between breeding seasons in the Yamal peninsula, a region of the Russian Arctic with a high breeding density of peregrines. We used satellite telemetry to investigate variation in home range at different stages of the breeding cycle during three breeding seasons (2009–2011). We fitted Argos satellite transmitters to 10 breeding peregrines (nine females and one male) and two male fledglings. All breeding females showed fidelity to the region of the southwestern Yamal peninsula, but they were not necessarily faithful to their specific breeding ranges with 33 % dispersing to new ranges up to 40 km away. The population of peregrines in our study area was relatively synchronous in their breeding chronology, with clutches initiated in close synchrony in early June despite the birds arriving on their breeding ranges ca. 3 weeks earlier. The average home range size for breeding females was 98 km² (95 % Maximum Convex Polygon). Over the breeding season, the home range area utilized by females increased in the late nestling period and again after the chicks fledged. Expansion of the home range coincided with changes in behavior associated with parental care, resulting in greater activity and more time spent away from the nest area when the female began hunting to provision nestlings and fledglings.     

Power of microsatellite markers for fingerprinting and parentage analysis in Eucalyptus grandis breeding populations

We report the genetic analysis of 192 unrelated individuals of an elite breeding population of Eucalyptus grandis (Hill ex Maiden) with a selected set of six highly polymorphic microsatellite markers developed for species of the genus Eucalyptus. A full characterization of this set of six loci was carried out generating allele frequency distributions that were used to estimate parameters of genetic information content of these loci, including expected heterozygosity, polymorphism information content (PIC), power of exclusion, and probability of identity. The number of detected alleles per locus ranged from 6 to 33, with an average of 19.8 +/- 9.2. The average expected heterozygosity was 0.86 +/- 0.11 and the average PIC was 0.83 +/- 0.16. Using only three loci, it was possible to discriminate all 192 individuals. The overall probability of identity considering all six EMBRA microsatellite markers combined was lower than 1 in 2 billion. An analysis of the sample size necessary to estimate expected heterozygosity with minimum variance indicated that at least 64 individuals have to be genotyped to characterize this parameter with adequate accuracy for most microsatellites in Eucalyptus. The high degree of multiallelism and the clear and simple codominant Mendelian inheritance of the set of microsatellites used provide an extremely powerful system for the unique identification of Eucalyptus individuals for fingerprinting purposes and parentage testing.     

Breeding success and nest-site characteristics of Red-breasted Flycatchers Ficedula parva in a primeval forest

Capsule Predation is a major factor influencing the breeding success of Red-breasted Flycatchers under natural conditions.

Aims To examine the breeding success of Red-breasted Flycatchers in relation to nest-site characteristics and time of breeding.

Methods Data were collected during seven breeding seasons under natural conditions in Bia?owie?a National Park. We used survival time analysis to estimate changes in survival probability over time and breeding success in relation to first-egg date and nest-site characteristics.

Results Offspring fledged successfully from 51% of clutches, but the Kaplan–Meier estimate of survival was lower at 0.43. Of the unsuccessful clutches, 82% were lost to predators. The highest probability of loss was during egg-laying and in the second half of incubation. Breeding success was influenced by the height of the nest above the ground, but no relation to other nest-site characteristics was found.

Conclusion To avoid predation Red-breasted Flycatchers build nests in various sites that are more open than most cavity-nesting species. The position of the nest-sites allows the sitting female to observe her surroundings and to escape rapidly from the nest, giving the chance for a replacement clutch.     

Effects of predation danger on migration strategies of sandpipers

We examine the potential selective importance of predation danger on the evolution of migration strategies of arctic‐breeding calidrid sandpipers. Adult calidrids truncate parental care for reasons not obviously related to levels of food abundance on the breeding areas or at migratory stopover sites, suggesting that a different trade‐off occurs between providing additional care and adult survivorship. The southward migrations of adult western sandpipers precede those of migratory peregrine falcons by almost a month. By moving early and quickly, adults remain ahead of migrant falcons all the way to their non‐breeding areas, where they rapidly moult flight feathers. They complete the moult just as falcons arrive in late September–October. By migrating early, they avoid exposure to falcons when they are unusually vulnerable, due to the requirements for fuelling migratory flight and of wing feather moult. Juvenile western sandpipers migrate south just as falcon numbers start to increase, but do not moult flight feathers in their first winter. Pacific dunlin use an alternative strategy of remaining and moulting in Alaska after falcons depart, and migrating to their overwintering sites after migrants have passed. East of the Rocky Mountains, the southbound migration of falcons begins 4–6 weeks later. Southbound semipalmated sandpipers make extended migratory stopovers, but their lengths of stay shorten prior to falcon migration to the sites in September. Predation danger also may affect the evolution of migration routes. Southbound western sandpipers fly directly from Alaska to southern British Columbia, in contrast to the multi‐stage journey northward along the Alaska panhandle. We estimate that a direct flight would be more economical on northward migration, but may be avoided because it would expose sandpipers to higher mass‐dependent predation danger from migratory falcons, which travel north with sandpipers. By contrast, few raptors are present in Alaska during preparation for the southward flight. A temporal and spatial window of safety may also permit semipalmated sandpipers to become extremely vulnerable while preparing for trans‐Atlantic southward flights. Danger management may account for the these previously enigmatic features of calidrid migration strategies, and aspects of those of other birds.