A simple, sensitive radiomicroassay for 5'-nucleotidase

The reagent 9,10-phenanthrenequinone has been shown to react with free arginine or with arginine residues within proteins to produce a compound whose fluorescence can be used to quantitatively determine submicrogram amounts of arginine. The assay procedure, which is simple, convenient, and suitable for automation, is performed by mixing a slight excess of phenanthrenequinone with the sample at high pH followed by acidification to produce the fluorescence. None of the commonly occurring amino acids were found to interfere with the analysis. Several commonly used buffers and organic solvents also did not interfere. The arginine content of intact proteins was accurately determined by this procedure with only microgram quantities of protein required. The method is compared with other commonly used procedures for arginine and protein determination.     

A new, convenient method for the rapid analysis of inorganic pyrophosphate.

A new method for the rapid analysis of inorganic pyrophosphate (PP_i) which utilizes the enzyme ATP sulfurylase is described. All components of the assay system are commercially available and inexpensive. The assay is linear over the range of 0.5–50.0 nmol of PP_i and is not affected by inorganic phosphate. ATP and PP_i can both be analyzed using this method.     

A method for the detection of superoxide in biological systems

The ability to detect superoxide in biological milieu is filled with a number of difficult problems. For example, the ferricytochrome c assay method cannot be used in the presence of NADPH-cytochrome P-450 reductase since cytochrome c is preferentially reduced by this enzyme. We have found that the superoxide-dependent oxidation of one particular hydroxylamine, 2-ethyl-1-hydroxy-2,5,5-trimethyl-3-oxazolidine, to its corresponding nitroxide, 2-ethyl-2,5,5-trimethyl-3-oxazolidinoxyl, can be used to quantitate superoxide production by hepatic microsomes and purified enzymes. We determined that this assay method is free from most of the problems inherent in other methods for the identification of superoxide.     

A simple method for quantitative, semiquantitative, and qualitative assay of protein.

Aqueous cesium trichloroacetate permits the buoyant resolution of various RNAs and also of DNA at room temperature and neutral pH. Precipitate formation does not occur, under either native or denaturing conditions. The compositional buoyant density gradient was determined, and the buoyant densities of a variety of RNAs are presented. The buoyant densities increase in the order protein < DNA ? duplex RNA ? single-stranded RNA.     

A microassay for the determination of monoamine oxidase activity using electron capture gas chromatography

A sensitive and specific assay for determining monoamine oxidase (MAO) activity in serum and platelets is described. The procedure employs m-iodobenzylamine as substrate. The product, m-iodobenzaldehyde, is separated on an OV-17 column and measured by electron capture. Gas chromatography offers the advantage of analytical specificity without the need for additional procedural steps to eliminate potential interferences. Electron capture detection of the iodinated aldehyde is sufficiently sensitive to allow routine analysis on platelet samples of less than 15 μg of protein and serum aliquots of 50 μl or less. Analysis of approximately 80 samples per day may be accomplished by a single worker by employing an automatic sampling system for gas chromatographic injection. This fact, in addition to the small sample size, makes the method particularly suitable for the determination of large numbers of clinical samples.     

Cu2+-hyaluronic acid complex: Spectrophotometric detection

Hyaluronic forms a complex with Cu²⁺ showing an absorption band at 239 nm. The results indicate a 2:1 polymer-Cu²⁺ ratio in the complex formation with an equilibrium constant, 3 × 10³. Glucuronic acid, one of the monomers of hyaluronic acid, reacts with the cupric ion, showing a similar band at 235 nm, but the complex formation involves multiple equilibria. No complex formation was detected with N-acetylglucosamine—the other monomer of hyaluronic acid—and Cu²⁺. The absorption bands of the copper complexes with the polymer and glucuronic acid are attributed to a charge-transfer involving ligand to the metal ion.     

A comparison of coulometric detectors for catecholamine analysis by LC-EC

An ion-pairing chromatographic method which uses a controlled potential coulometric detector is described. Two coulometric detectors with different electrolytic cell designs have been investigated. The resulting sensitivity can be comparable to the conventional amperometric detector. This technique has been applied to the analysis of catecholamines.     

Simultaneous determination of guanine nucleotides in rat brain by high-performance liquid chromatography with dual-electrochemical detection

A new, sensitive, and specific assay method for guanine nucleotides using high-performance liquid chromatography with dual-electrochemical detection was developed. GTP, GDP, GMP, and cyclic GMP were separated with reversed-phase "ion-pair" chromatography and detected by a dual-electrochemical detector. Only guanine nucleotides among all purine and pyrimidine nucleotides responded to the electrochemical detector at 0.95 V. The peak heights for these guanine nucleotides were linear at concentrations between 0.5 pmol and 1 nmol. The regional distribution of these guanine nucleotides in the rat brain was studied by this new assay method.     

A physico-chemical study of heparin: Evidence for a calcium-induced co-operative conformational transition

The conformations of heparin in aqueous solution in the presence of sodium, potassium, magnesium and calcium cations were studied using circular dichroism, optical rotation, nuclear magnetic resonance and equilibrium dialysis. Potassium and magnesium cations, when added to sodium heparinate solutions, cause small chiroptical changes. Binding of calcium ions gives rise to large changes in both optical rotation and circular dichroism. This is indicative of a major change in chain conformation, which is also manifest in ¹³C and ¹H n.m.r.⁴Equilibrium dialysis suggests one mole of calcium bound per mole of tetrasaccharide, which n.m.r. indicates to be appropriately sulphated iduronateglucosamine-iduronate-glucosamine. The calcium is chelated by two iduronate carboxyl groups. Proton-proton coupling constants, determined by convolution difference spectroscopy and Carr-Purcell sequences, indicate that, over the temperature range 285 to 353 K, the iduronate ring is best described as ¹C₄(l) and the glucosamine residue as ⁴C₁(d) for both sodium and calcium forms.The conformational change induced by calcium is ascribed to rotation around the glycosidic linkages. The binding process is co-operative and the binding constant of 10³ to 10⁴m^?1 is biologically significant. The findings are consistent with intramolecular binding. Hence, this study represents the first report of a polysaccharide undergoing a cation-induced intramolecular disorder-order process. The authors postulate that a function of the post-polymerization epimerization of d-glucuronate to l-iduronate is the attainment of the precise geometry required for co-operative calcium binding with consequent modulation of the flexibility of the tetrasaccharide units.     

A systematic approach to the comparison of protein structures

A systematic method has been developed for comparing the backbone conformations of proteins (Remington & Matthews, 1978). Two proteins are compared by successively optimizing the agreement between all possible segments of a chosen length from one protein, and all possible segments of the same length from the other protein. The method reveals any similarities between the two proteins, and provides an estimate of the statistical significance of any given structure agreement that is obtained.The method has been tested in a number of cases, including comparisons of the dehydrogenases and of the pancreatic and bacterial serine proteases. These examples were chosen to test the ability of the comparison method to detect structural similarities in the presence of large insertions and deletions. The results suggest that the detection of the “nucleotide binding fold” in the dehydrogenases is at the limit of the capability of the comparison technique in its original form, although it may be possible to generalize the method to allow for insertions and deletions in proteins.The results of many protein comparisons, made with different probe lengths, are summarized. For medium and long probe lengths, the average value of the structural agreement does not depend very much on the type of protein being compared. The average value of the structure agreement increases with the square root of the probe length, but for probe lengths above about 40 residues, the standard deviation is independent of probe length. From these observations it is possible to construct a generalized probability diagram to evaluate the significance of any structure agreement that might be obtained in comparing two proteins.     

The geometry of the thioester group and its implications for the chemistry of acyl coenzyme A

L-929 cell surface membranes were incubated with S-adenosyl-l-[methyl-³H]-methionine and found to contain phosphatidylethanolamine: S-adenosylmethionine N-methyltransferase (phosphatidylethanolamine N-methyltransferase) activity. The enzyme or combination of enzymes responsible for this activity methylated endogenous phosphatidylethanolamine and its methylated derivatives to yield phosphatidyl-N-monomethylethanolamine, phosphatidyl-N,N-dimethylethanolamine, and phosphatidylcholine. Maximum enzyme activity was expressed at pH 6.9, the reaction was not dependent on the presence of divalent cations, and exogenously added phospholipids did not stimulate the rate of reaction. Phospholipid methylation was inhibited by S-adenosyl-l-homocysteine and by local anaesthetic drugs such as chlorpromazine and tetracaine which partition into the lipid bilayer. Control experiments demonstrated that the surface membrane-associated methyltransferase activity was not due to contamination of surface membrane preparations with intracellular membranes. Surface membranes were found to have higher specific methyltransferase activities than whole L-cell homogenates or endoplasmic reticulum-enriched microsomes. The low rate of methyltransferase function expressed in vitro (approximately 1 pmol/min · mg protein) suggests that phospholipid methylation is not a major metabolic source of surface membrane phosphatidylcholine.     

A 31P nuclear magnetic resonance and fluorescence study of the interaction of an anti-arthritic gold phosphine drug with albumin. A bioinorganic approach

¹H decoupled ³¹P nmr spectra were recorded for a series of gold complexes of formulae PEt₃AuL and [PEt₃AuL′]⁺ClO₄^? where L and L′ are ligands containing biologically relevant donor atoms. This series of a model compounds provide a ³¹P nmr scale for the interaction of the ‘PEt₃Au’ moiety with proteins. The reactions of albumin and SH blocked albumin with PEt₃AuCl were monitored by ³¹P nmr spectroscopy. Comparison of the observed chemical shifts to those of the model compounds revealed preferential binding of gold to S occurs. Fluorescence studies of the gold-protein interactions imply that a protein conformational charge occurs on binding of gold. The implications of these studies on the mechanism of action of anti-arthritic gold drugs is discussed.     

A source of error in the rat diaphragm assay of insulin

The radioautographs and statistical data presented herein indicate that the uptake of glucose [¹⁴C] into rat diaphragm sections does not depend solely on the insulin concentration of the incubation medium. It is shown that by taking into account the tissue weight of the diaphragm section, a linear relationship for uptake vs log (insulin concentration) may be obtained. This serves to emphasize how careful one must be when modifying a biological assay so that previously unimportant conditions do not become significant enough to invalidate the results.     

A kinetic and spectral study of the alkaline transitions of chloroperoxidase

The optical spectrum of chloroperoxidase in the near ultraviolet and visible region was studied from pH 6 to 12. Chloroperoxidase undergoes a first transition which is irreversible at pH 7 and a second transition near pH 11. The second transition is reversible provided the incubation period above pH 11 is kept as short as possible. The spectral properties of the intermediates were studied in the Soret region by means of a rapid scan apparatus. The rates of the transitions were measured in a stopped-flow apparatus. The pH dependence of both the spectra and the rate constants indicate that at least three ionizations are involved in the first alkaline transition.     

Determination of 4-hydroxyanisole in serum using liquid chromatography with electrochemical detection

4-Hydroxyanisole (p-methoxyphenol) has been used in the treatment of malignant melanomas. A simple, sensitive, and specific, method for its determination by liquid chromatography with electrochemical detection (LCEC) is described. Vanillin (4-hydroxy-3-methoxybenzaldehyde) was used as an internal standard.     

A scanning dual wavelength spectrophotometer: Application to the study of photosynthetic electron transport

A dual wavelength scanning spectrophotometric method for the analysis of small absorbance changes in turbid suspensions is presented, which improves upon the point by point method of obtaining difference spectra in terms both of accuracy and rapidity. Examples are shown of the application of this instrument, in conjunction with a computer curve-resolving routine, to problems in photosynthetic electron transport.     

Steric effects on activation energy for the electrochemical oxidation of organocobaloximes

Heterogeneous electron transfer rate constants were determined as a function of electrode potential for one-electron oxidation in acetonitrile (AN) at O °C of a series of organocobaloximes [R-Co(DH)₂L] bearing widely different organic groups. Reaction entropies were determined by voltammetric half-wave potential (E^r_{$\text{1}\text{2}$}) measurements in a non-isothermal cell. The electron transfer coefficients and reorganization parameters were calculated following the Marcus theory. The reaction free energies relative to a reference couple ΔG° are linearly correlated with the polar Taft constant of the organic substituent R.The steric effects on ΔG° are shown by the correlation of E^r_{$\text{sol1}\text{2}$} with the CoC bond distance.Assuming constancy of double layer effects along the series in the given solution composition, the trends of the apparent rate constants k_app were considered in order to evaluate the effects of the nature of the organic ligand on the activation energy ΔG³ of the electron transfer. The steric effects on ΔG³ are pointed out i.a. by consideration of the relationship between ΔG³ and ΔG°.     

Temperature dependent conformational changes at the active site of pyruvate kinase. A li nuclear magnetic resonance study.

The interaction of Li⁺, a weak activator of pyruvate kinase, with substrate and inhibitor complexes of the enzyme has been investigated by magnetic resonance techniques. Proton relaxation rate (PRR) titrations indicate that the dissociation constant of Li⁺ from the ternary enzyme-Mn(II)-phosphoenolpyruvate (P-enolpyruvate) complex is 15 mm at 5 °C and 17 mm at 30 °C. The electron paramagnetic resonance spectrum of the enzyme-Mn(II)-Li(I)-P-enolpyruvate complex is the superposition of spectra for two distinct species (Reed, G. H., and Cohn, M. (1973) J. Biol. Chem.248, 6436–6442). Low temperatures favor the form giving rise to the more nearly isotropic spectrum, whereas high temperatures favor the species giving rise to the anisotropic “K⁺-like” spectrum. ⁷Li nuclear magnetic resonance data are consistent with a model in which the two forms observed by epr correspond to differing Mn(II) to Li(I) distances. The form giving rise to the anisotropic spectrum is characterized by a Mn(II) to Li(I) distance of 4.7 Å, and in the more isotropic form this distance is approximately 9 Å. The 4.7 Å separation of the Mn(II) and Li(I) in the anisotropic form of the complex compares favorably with the 4.9 Å separation of Mn(II) and T1(I) (Reuben, J., and Kayne, F. J. (1971) J. Biol. Chem.246, 6227–6234) in the P-enolpyruvate complex, although T1⁺ is a much better activator of the pyruvate kinase reaction. Thus, a change in the distance between the monovalent and divalent cations does not account quantitatively for the lower activation by Li⁺, inasmuch as more than 50% of the enzyme-Mn(II)-Li(I)-P-enolpyruvate complex has the “active” conformation with respect to the separation of the cations and the epr spectrum of the complex. As reported previously (Reed, G. H., and Morgan, S. D. (1974) Biochemistry13, 3537–3541), the dissociation constant of oxalate and the epr spectrum for the ternary complex of pyruvate kinase with Mn(II) and oxalate are not influenced by the species of monovalent cation present. The nuclear relaxation rates of Li⁺ are increased in the presence of the ternary oxalate complex, although the separation of the Mn(II) and Li(I) appears to be much greater than for the “anisotropic” form of the P-enolpyruvate complex.     

Significance of the polar lobe for the determination of dorsoventral polarity in Dentalium vulgare (da Costa)

The development of dorsoventral polarity in Dentalium dentale has been analyzed after inhibiting first polar lobe formation with cytochalasin B and bisecting the egg into two equal parts at an early trefoil stage. Cleavage pattern and morphogenesis have been studied in both in vivo and permanent cytological preparations. After bisecting the egg, each blastomere may fuse with its adhering polar lobe half and subsequently behave as a CD blastomere. The polar lobe substance may induce both halves to develop an apical tuft and probably also a posttrochal region. Cytochalasin B embryos which pass through an equal first cleavage form a four-cell stage in which the two D blastomeres are situated opposite or adjacent to each other (CDCD or CCDD embryos, respectively). During further development the larvae show a duplication of lobe-dependent structures. It is concluded that dorsoventral polarity originates epigenetically by fusion of the polar lobe with one of the first two blastomeres and is not preformed in the uncleaved egg.