Photoheterotrophic Microbes in the Arctic Ocean in Summer and Winter

Photoheterotrophic microbes, which are capable of utilizing dissolved organic materials and harvesting light energy, include coccoid cyanobacteria (Synechococcus and Prochlorococcus), aerobic anoxygenic phototrophic (AAP) bacteria, and proteorhodopsin (PR)-containing bacteria. Our knowledge of photoheterotrophic microbes is largely incomplete, especially for high-latitude waters such as the Arctic Ocean, where photoheterotrophs may have special ecological relationships and distinct biogeochemical impacts due to extremes in day length and seasonal ice cover. These microbes were examined by epifluorescence microscopy, flow cytometry, and quantitative PCR (QPCR) assays for PR and a gene diagnostic of AAP bacteria (pufM). The abundance of AAP bacteria and PR-containing bacteria decreased from summer to winter, in parallel with a threefold decrease in the total prokaryotic community. In contrast, the abundance of Synechococcus organisms did not decrease in winter, suggesting that their growth was supported by organic substrates. Results from QPCR assays revealed no substantial shifts in the community structure of AAP bacteria and PR-containing bacteria. However, Arctic PR genes were different from those found at lower latitudes, and surprisingly, they were not similar to those in Antarctic coastal waters. Photoheterotrophic microbes appear to compete successfully with strict heterotrophs during winter darkness below the ice, but AAP bacteria and PR-containing bacteria do not behave as superior competitors during the summer.Photoheterotrophy, which is the ability to utilize organic substrates and to harvest light energy, occurs in a broad range of microbes (14). Phototrophic microbes should be included in models of carbon cycling and food web dynamics, which now typically include only photoautotrophs, which produce organic carbon and oxygen, and heterotrophs, which consume organic matter and oxygen via aerobic respiration (55). Photoheterotrophy is potentially an important competitive adaptation, enabling microbes to survive adverse conditions or to outgrow competitors. Photoheterotrophic microbes include proteorhodopsin (PR)-containing bacteria, aerobic anoxygenic phototrophic (AAP) bacteria, and cyanobacteria.PR is a membrane protein that binds retinal and functions as a light-driven proton pump that can have several physiological functions, including ATP generation (15). The actual role of PR in the environment is uncertain, however. Light enhances the growth of some PR-containing bacteria, such as Dokdonia sp. (17), but has no effect on the growth of others, including Pelagibacter ubique (16) and the SAR92-like strain HTCC2207 (44). Similarly, Campbell et al. (4) found no significant correlation with light intensity for three of four PR gene types examined in the North Atlantic Ocean. Nevertheless, emerging biogeographic patterns of PR genes are providing clues about what controls the distribution and abundance of PR-containing photoheterotrophs in oceanic systems. One of the first oceanic environments to be examined for PR was the coastal waters near Palmer Station, Antarctica (2). Sequence analysis revealed that the Antarctic PRs differed from those isolated from Monterey Bay and surface waters in the central North Pacific (2). In spite of this early report, there has been no work on PR-containing bacteria in Arctic waters. PR-containing bacteria may have unique responses to the continuous summer light, winter darkness, and shading by seasonal ice cover that occur in high-latitude environments.The diversity and abundance of AAP bacteria have been examined by sequencing of the pufM gene (20, 51, 58), which is involved in bacteriochlorophyll (BChl a) synthesis, and by counting of BChl a-fluorescing cells by infrared fluorescence microscopy (14). Enumeration by infrared epifluorescence microscopy indicates that the abundance of AAP bacteria in environments such as the North Pacific Gyre and the Northeast Atlantic Ocean ranges from 1% to 10% (12, 13, 42) and can exceed 10% of the total prokaryotic community in estuaries (41, 50). AAP bacteria have been found in freshwater high-latitude waters (20, 35), but sequence analysis of pufM genes indicates that these AAP bacteria are distinct from those found in marine systems (50). The abundance of AAP bacteria decreases with latitude within the North Atlantic Ocean, from the central gyre to the waters near Greenland (13). Although these photoheterotrophic microbes are still present at 65°N, extrapolation of the trend suggests that AAP bacteria might be absent from the high-latitude waters of the Arctic Ocean.Polar waters appear to be an exception to the otherwise widespread distribution of coccoid cyanobacteria in the world oceans (33, 54). The abundance of Synechococcus and Prochlorococcus decreases with latitude, as exemplified by the 4-orders-of-magnitude decline in abundance between 44°S and 62°S in the South Atlantic Ocean (25). The abundance of Synechococcus also decreases with latitude in the North Atlantic Ocean, between the central gyre and the waters near Greenland, to a low level at 65°N (13). The strong correlation between abundance and temperature (25) suggests that coccoid cyanobacteria are not important at high latitudes, although there are scattered reports of Prochlorococcus in waters as far north as 60°N, near Iceland (27), and of Synechococcus in Antarctic coastal waters (53). However, more data are needed on the abundance of Synechococcus and Prochlorococcus in polar waters such as the Arctic Ocean.The goal of this study was to explore the abundance and diversity of photoheterotrophic microbes in the Arctic Ocean in order to develop a better picture of the biogeographic range of these biogeochemically important microbes and to gain insights into their ecology. Coastal waters of the Chukchi Sea and the Beaufort Sea were sampled in summer at the end of 24-h daylight and in winter following the period of 24-h darkness. The abundances of cyanobacteria, PR-containing bacteria, and AAP bacteria were monitored using flow cytometry, infrared epifluorescence microscopy, and real-time quantitative PCR (QPCR). These data provide a unique perspective on the potential impact of photoheterotrophic microbes on food webs and carbon cycling in this high-latitude aquatic system.     

Reduction of Mercury to the Elemental State by a Yeast

A yeast of the genus Cryptococcus has been isolated from a stream and was shown to be capable of reducing mercury to the elemental state. The organism grows in Wickerham broth supplemented with high concentrations of mercury (II) chloride (180 mg of mercury per liter) and will metabolize [(14)C]glucose in this medium as do cells in the absence of mercury. Mercury was associated with the cell wall and membrane, and in vacuoles within the cytoplasm.     

Indirect Interactions in the High Arctic

Indirect interactions as mediated by higher and lower trophic levels have been advanced as key forces structuring herbivorous arthropod communities around the globe. Here, we present a first quantification of the interaction structure of a herbivore-centered food web from the High Arctic. Targeting the Lepidoptera of Northeast Greenland, we introduce generalized overlap indices as a novel tool for comparing different types of indirect interactions. First, we quantify the scope for top-down-up interactions as the probability that a herbivore attacking plant species i itself fed as a larva on species j. Second, we gauge this herbivore overlap against the potential for bottom-up-down interactions, quantified as the probability that a parasitoid attacking herbivore species i itself developed as a larva on species j. Third, we assess the impact of interactions with other food web modules, by extending the core web around the key herbivore Sympistis nigrita to other predator guilds (birds and spiders). We find the host specificity of both herbivores and parasitoids to be variable, with broad generalists occurring in both trophic layers. Indirect links through shared resources and through shared natural enemies both emerge as forces with a potential for shaping the herbivore community. The structure of the host-parasitoid submodule of the food web suggests scope for classic apparent competition. Yet, based on predation experiments, we estimate that birds kill as many (8%) larvae of S. nigrita as do parasitoids (8%), and that spiders kill many more (38%). Interactions between these predator guilds may result in further complexities. Our results caution against broad generalizations from studies of limited food web modules, and show the potential for interactions within and between guilds of extended webs. They also add a data point from the northernmost insect communities on Earth, and describe the baseline structure of a food web facing imminent climate change.     

Reduction of Mercury Chloride by Chlorella: Evidence for a Reducing Factor

Evidence is brought for the presence of low molecular weight, heat stable, mercury reducing factors in Chlorella cells. Some of the properties of these factors, which appears to be normal metabolities, are described. These factors are also present in the medium in which the cells grow. The reduced mercury, Hg⁰, is volatilized from the culture medium more rapidly than Hg⁺². The resultant decrease in the Hg concentration appears to be the main reason for the recovery of the cells from Hg stress. No resistance to Hg developed in cells emerging from the stress.     

Manganese Reduction by Microbes from Oxic Regions of the Lake Vanda (Antarctica) Water Column

Depth profiles of metals in Lake Vanda, a permanently ice-covered, stratified Antarctic lake, suggest the importance of particulate manganese oxides in the scavenging, transport, and release of metals. Since manganese oxides can be solubilized by manganese-reducing bacteria, microbially mediated manganese reduction was investigated in Lake Vanda. Microbes concentrated from oxic regions of the water column, encompassing a peak of soluble manganese [Mn(II)], reduced synthetic manganese oxides (MnO₂) when incubated aerobically. Pure cultures of manganese-reducing bacteria were readily isolated from waters collected near the oxic Mn(II) peak. Based on phylogenetic analysis of the 16S rRNA gene sequence, most of the isolated manganese reducers belong to the genus Carnobacterium. Cultures of a phylogenetically representative strain of Carnobacterium reduced synthetic MnO₂ in the presence of sodium azide, as was seen in field assays. Unlike anaerobes that utilize manganese oxides as terminal electron acceptors in respiration, isolates of the genus Carnobacterium reduced Mn(IV) via a diffusible compound under oxic conditions. The release of adsorbed trace metals accompanying the solubilization of manganese oxides may provide populations of Carnobacterium with a source of nutrients in this extremely oligotrophic environment.     

微生物冷休克蛋白的生理功能及其潜在应用

冷休克反应是普遍存在于微生物体内的一种适应环境温度骤降的应答机制,而氨基酸序列高度保守的冷休克蛋白则是调控冷休克反应的重要因子。越来越多的研究表明,冷休克蛋白除了调控冷休克反应外,还参与调控了生物体多个性状,如宿主正常生长和分化、病原菌的侵袭力和致病性以及宿主对多种逆境（高渗透压、抗生素）的应答。综述了冷休克蛋白及其来源、其参与调控的生理性状和基于冷休克反应及冷休克蛋白的应用,以期为发酵条件优化、食品储藏、致病菌抑制以及作物性状改良等方面提供有益参考。     

Carbon sources for lake food webs in the Canadian High Arctic and other regions of Arctic North America

We investigated the role of autochthonous and terrestrial carbon in supporting aquatic food webs in the Canadian High Arctic by determining the diet of the dominant primary consumer, aquatic chironomids. These organisms were studied in fresh waters on 3 islands of the Arctic Archipelago (~74–76°N) including barren polar desert watersheds and a polar oasis with lush meadows. Stomach content analysis of 578 larvae indicated that chironomids primarily ingested diatoms and sediment detritus with little variation among most genera. Carbon and nitrogen stable isotope mixing models applied to 2 lakes indicated that benthic algae contributed 68–95% to chironomid diet at a polar desert site and 70–78% at a polar oasis site. Detritus, originating from either phytoplankton or terrestrial sources, also contributed minor amounts to chironomid diet (0–32%). Radiocarbon measurements for the 2 lakes showed that old terrestrial carbon did not support chironomid production. Carbon stable isotope ratios of chironomids in other High Arctic lakes provided further dietary evidence that was consistent with mixing model results. These findings indicate that, in the Canadian High Arctic, chironomids (and fish that consume them) are supported primarily by benthic algae in both polar desert and oasis lakes. In contrast, our review of carbon flow studies for lakes in other Arctic regions of North America shows that terrestrial carbon and phytoplankton can be important energy sources for consumers. This study provides a baseline to detect future climate-related impacts on carbon pathways in High Arctic lakes.     

Nitrogen fixation by three species of leguminosae in the Canadian High Arctic Tundra

Abstract. Significant levels of nitrogenase activity (nitrogen fixation) were demonstrated in three species of Arctic legumes ( Oxytropis maydelliana, O. arctobia and Astragalus alpinus ) growing in high tundra at Sarcpa Lake, Melville Peninsula, N.W.T. Nitrogenase activity of intact plants was correlated with the number of nodules per plant, with field soil temperatures and limited by water shortage. Activity in freshly detached nodules showed a plateau of maximum activity between 10°C and 25°C and a near linear decline with temperature down to 0°C. Unusually, the segmented nodules of all three species are perennial in which growth and leghaemoglobin production resumes each spring from an overwintering apical meristem. Nodules are most numerous in the warmer soil stratum (2–10 cm. depth). Other studies indicate that the arctic rhizobia belong to a single cold-adapted species which has co-evolved with the legumes of tundra.     

Kinetics of Mercury Reduction by Serratia marcescens Mercuric Reductase Expressed by Pseudomonas putida Strains

Mercury (Hg) resistance is widespread among microorganisms and is based on the intracellular transformation of Hg(II) to less toxic elemental Hg(0). The use of microbial consortia to demercurize polluted wastewater streams and environments has been demonstrated. To develop efficient and versatile microbial cleanup strategies requires detailed knowledge of transport and reaction rates. This study focuses on the kinetics of the key enzyme of the microbial transformation, e.g., the mercuric reductase (MerA) under conditions closely resembling the cell interior. To this end, previously constructed and characterized Pseudomonas putida strains expressing MerA from Serratia marcescens were applied. Of the P. putida strains considered in this study P. putida KT2442::mer73 constitutively expressing broad spectrum mercury resistance (merTPAB) yielded the highest mercuric reductase (MerA) activity directly after cell disruption. MerA in the raw extract was further purified (about 100 fold). Reduction rates were measured for various substrates (HgCl₂, Hg₂SO₄, Hg(NO₃)₂ and phenyl mercury acetate) up to high concentrations dependent on the purification grade. In all cases, a pronounced substrate inhibition was found. The kinetic constants determined for the cell raw extract are in agreement with those measured for intact cells. However, the rate data exhibit reduced affinity and inhibition with rising purification grade (specific activity). Therefore, the findings seemingly point to reactions preceding the catalytic reduction. Based on simplified assumptions, a kinetic model is suggested which reasonably describes the experimental findings and can advantageously be applied to the bioreactor design.     

Selenium-Fortified Wheat: Potential of Microbes for Biofortification of Selenium and Other Essential Nutrients

Selenium (Se) is an essential micronutrient for humans and animals, and Se deficiency is a worldwide problem. Plants are a main dietary source of Se for humans and livestock. In this study we investigated the effect of two selenium-tolerant bacterial strains Bacillus cereus-YAP6 and Bacillus licheniformis-YAP7, on the growth and Se uptake by wheat plants. The bacteria-inoculated plants exhibited a significant increase in spike length, shoot length and dry biomass. Inoculated Se-treated plants also showed increased stem Se, S, Ca and Fe concentrations, by up to 375%, 40%, 55%, and 104%, respectively, and increased kernel Se, S, Ca and Fe concentrations by up to 154%, 85%, 60%, and 240%, respectively, compared to un-inoculated Se-treated plants. In conclusion, inoculation with strains YAP6 andYAP7 is a good Se biofortification strategy for wheat. Both strains showed resistance to other toxic elements, i.e., As, Cd, Co, Cr, Cu, Mn and Zn. Optimal growth temperature and pH for both strains were 37°C and pH7, respectively, but both strains can grow very well at different temperatures (28–45°C) and at alkaline pH. Both strains have high Se reduction potential: strains YAP6 and YAP7 converted 92% and 32% of selenite into elemental Se within 48 h, respectively.     

Small-scale diel vertical migration of zooplankton in the High Arctic

Diel vertical migration (DVM) of zooplankton is considered less prominent at high latitudes where diel changes in irradiance are minimal during periods of midnight sun and polar night, leaving zooplankton without a temporal refuge and thus eliminating a key advantage of DVM. One of the shortcomings of previous DVM studies of zooplankton based on net sampling is that the depth resolution often has been too coarse to detect vertical migrations over short distances. We investigated DVM of zooplankton during August 2010 in drifting sea ice northeast of Svalbard (~81.5°N, ~30.5°E). Classical DVM behaviour (midnight rising, midday sinking) was observed between 20 and 80 m in young copepodite stages (CI–III) of Calanus finmarchicus and Calanus glacialis. The copepods Microcalanus spp., Pseudocalanus spp., Oithona atlantica, Oithona similis and Triconia borealis, alongside Eukrohnia hamata, Limacina helicina, and Fritillaria spp., all displayed signs of DVM. We conclude that zooplankton exhibit DVM in ice-covered waters over rather short distances to optimise food intake in the presence of predators.     

Evidence for Mass-Independent Fractionation of Mercury Isotopes by Microbial Activities Linked to Geographically and Temporally Varying Climatic Conditions in Arctic and Subarctic Lakes

Cores from Arctic and subarctic Canadian lakes were subjected to isotopic, chemical, micropaleontological, and geochronological analyses for the purpose of investigating mass-independent fractionation (MIF) of mercury isotopes. The cores preserved records of early twentieth century climatic warming (～1915–1940), subsequent cooling (～1940–1970), and renewed warming (～1970–2004) [phases W1, C1, and W2, respectively]. Per mil deviations of ¹⁹⁹Hg/²⁰²Hg and ²⁰¹Hg/²⁰²Hg ratios due to MIF (Δ¹⁹⁹Hg and Δ²⁰¹Hg values) correlated with biological and biogeochemical factors linked to geographical and temporal climatic variations but varied, in large part, independently of each other. Δ²⁰¹Hg tended to increase from east to west. Among subarctic lakes this trend paralleled westward decreases in annual precipitation, diatom concentration, and the post-1990 organic carbon/pre-1900 organic carbon ratio, and Δ²⁰¹Hg increased in the order C1 ≤ W1 < W2. Δ²⁰¹Hg varied inversely with diatom concentration, but Δ¹⁹⁹Hg increased with increasing abundance of cyanobacteria. Arctic lakes, however, showed a south-to-north decrease in Δ¹⁹⁹Hg/Δ²⁰¹Hg ratios, paralleling a decrease in annual precipitation and an increase in Chlorophyta and cyanobacteria. Δ-values of individual lakes depended on the abundances of specific phylogenetic groups of phytoplankton, pyrolysis products of organic matter, and manganese, and on the manganese/iron ratios of oxyhydroxides, displaying clear separation of data representing different climatic trends. These results suggest that MIF was caused by microorganisms, such as bacteria which decomposed dead phytoplankton and mediated oxidation-reduction reactions of manganese and iron, and that the nature and isotope-fractionating activities of the microflora varied with climate-related environmental and biotic factors, including the community structure of the phytoplankton.     

Small-Scale Wetland Restoration in the High Arctic: A Long-Term Perspective

Results are presented using vegetative shoots and bryophyte sods to restore floristically impoverished high arctic wet sedge-moss meadows that had suffered intense damage from vehicle activity during the period 1960–1967. Clonal transplants of Carex aquatilis var. stans, a native sedge, were planted with and without bryophyte sods in vehicle ruts in 1972. After nearly two decades, there was less Carex cover in the planted ruts with flowing water than in the contiguous controls. This pattern was slightly reversed in planted plots with standing water. Reinvasion of Eriophorum angustifolium occurred in treated ruts, but cover was less in both treatments than in controls in 1990. The unexpected recruitment of Eriophorum scheuchzeri from the seed bank in moss-sodded plots is discussed in terms of its local and regional importance. Total plant cover in restored ruts was nearly equal to that of controls, but biomass was somewhat less than that in control plots. Plots with bryophytes were environmentally distinct, due primarily to increases in organic mat depth relative to controls. After 18 years, restoration efforts resulted in increased plant cover in treated ruts compared to naturally recovering ruts.

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High Arctic summer warming tracked by increased Cassiope tetragona growth in the world's northernmost polar desert

Rapid climate warming has resulted in shrub expansion, mainly of erect deciduous shrubs in the Low Arctic, but the more extreme, sparsely vegetated, cold and dry High Arctic is generally considered to remain resistant to such shrub expansion in the next decades. Dwarf shrub dendrochronology may reveal climatological causes of past changes in growth, but is hindered at many High Arctic sites by short and fragmented instrumental climate records. Moreover, only few High Arctic shrub chronologies cover the recent decade of substantial warming. This study investigated the climatic causes of growth variability of the evergreen dwarf shrub Cassiope tetragona between 1927 and 2012 in the northernmost polar desert at 83°N in North Greenland. We analysed climate–growth relationships over the period with available instrumental data (1950–2012) between a 102‐year‐long C. tetragona shoot length chronology and instrumental climate records from the three nearest meteorological stations, gridded climate data, and North Atlantic Oscillation (NAO) and Arctic Oscillation (AO) indices. July extreme maximum temperatures (JulT_emx), as measured at Alert, Canada, June NAO, and previous October AO, together explained 41% of the observed variance in annual C. tetragona growth and likely represent in situ summer temperatures. JulT_emx explained 27% and was reconstructed back to 1927. The reconstruction showed relatively high growing season temperatures in the early to mid‐twentieth century, as well as warming in recent decades. The rapid growth increase in C. tetragona shrubs in response to recent High Arctic summer warming shows that recent and future warming might promote an expansion of this evergreen dwarf shrub, mainly through densification of existing shrub patches, at High Arctic sites with sufficient winter snow cover and ample water supply during summer from melting snow and ice as well as thawing permafrost, contrasting earlier notions of limited shrub growth sensitivity to summer warming in the High Arctic.