PHOTOSYNTHETIC PIGMENTS OF PSEUDOSCOURFIELDIA MARINA AND SELECT GREEN FLAGELLATES AND COCCOID ULTRAPHYTOPLANKTON: IMPLICATIONS FOR THE SYSTEMATICS OF THE MICROMONADOPHYCEAE (CHLOROPHYTA)1

Photosynthetic pigments of the green flagellate Pseudoscourfieldia marina (Throndsen) Manton (Micromonadophyceae) are similar to those of the coccoid Pycnococcus provasolii Guillard; prasinoxanthin is the predominant carotenoid. Other organisms that possess prasinoxanthin also possess additional pigments not found in either P. marina or P. provasolii. Uriolide, a xanthophyll previously described from the coccoid done URI 266G, was also found in Mantoniella squamata (Manton et Parke) Desikachary, Micromonas pusilla Manton et Parke and Mamiella gilva (Parks et Rayns) Moestrup, all flagellate members of the Mamiellales, and the coccoid clone IV E5G. Other unidentified carotenoids were also present in M. squamata, M. pusilla, and M. gilva. These results suggest that P. marina and the coccoid organisms URI 266G and IV E5G may be related to the Mamiellales, and that P. provasolii may be more closely related to P. marina than to M. squamata, M. pusilla, and M. gilva.     

PRASINOPHYTES FORM INDEPENDENT LINEAGES WITHIN THE CHLOROPHYTA: EVIDENCE FROM RIBOSOMAL RNA SEQUENCE COMPARISONS1

Complete nuclear-encoded small-subunit ribosomal RNA (rRNA) sequences were determined from Nephroselmis olivacea Stein, Pseudoscourfieldia marina (Throndsen) Manton, Scherffelia dubia (Perty) Pascher, and Tetraselmis striata Butcher (Chlorophyta) to investigate the evolutionary position of these scaly green flagellates. Results of neighbor-joining and maximum parsimony phylogenetic analyses demonstrate at least two independent prasinophyte lineages defined by N. olivacea/P. marina and S. dubia/T. striata, which together with the Chlorophyceae, Pleurastrophyceae, and Ulvophyceae form a monophyletic group. Within this assemblage, N. olivacea and P. marina represent an early-diverging lineage that is evolutionarily distinct from the later-diverging S. dubia/T. striata clade. The branch point of the S. dubia/T. striata clade precedes the near-simultaneous radiation of the Chlorophyceae, Ulvophyceae, and Microthamniales. Though interrelationships between these three latter groups of algae are not resolved, the phylogenetic analyses demonstrate that the Prasinophyceae (sensu Moestrup and Throndsen) and the Pleurastrophyceae (sensu Mattox and Stewart) are not monophyletic classes.     

PHYLOGENETIC ANALYSIS AND GENOME SIZE OF OSTREOCOCCUS TAURI (CHLOROPHYTA, PRASINOPHYCEAE)

Ostreococcus tauri Courties et Chrétiennot-Dinet is the smallest described autotrophic eukaryote dominating the phytoplanktonic assemblage of the marine Mediterranean Thau lagoon (France). Its taxonomic position was partly elucidated from ultrastructure and high-pressure liquid chromatography (HLPC) pigment analysis. The sequence analysis of the 18S rDNA gene of O. tauri measured here is available in EMBL Nucleotide Sequence Database (accession number: Y15814) and allowed to clarify its phylogenetic position. O. tauri belongs to the Prasinophyceae and appears very close to Mantoniella, a typical scaly Prasinophyceae, morphologically very different from the naked and coccoid Ostreococcus. An electrophoretic analysis of O. tauri shows that the nucleus contains 10.20 mbp. This small genome, fragmented into 14 chromosomes ranging in size from 300 to 1500 kbp, confirms the minimalist characteristics of Ostreococcus tauri.     

PHYLOGENETIC POSITION OF CRUSTOMASTIX STIGMATICA SP. NOV. AND DOLICHOMASTIX TENUILEPIS IN RELATION TO THE MAMIELLALES (PRASINOPHYCEAE,CHLOROPHYTA)1

A new marine microalga from the Mediterranean Sea, Crustomastix stigmatica Zingone, is investigated by means of LM, SEM, TEM, and pigment and molecular analyses (nuclear‐encoded small subunit [SSU] rDNA and plastid‐encoded rbcL). Pigment and molecular information is also provided for the related species Dolichomastix tenuilepis Throndsen et Zingone. Crustomastix stigmatica has a bean‐shaped cell body 3–5 μm long and 1.5–2.8 μm wide, with two flagella four to five times the body length. The single chloroplast is pale yellow‐green, cup‐shaped, and lacks a pyrenoid. A small bright yellow stigma is located in the mid‐dorsal part of the cell under the chloroplast membrane. An additional accumulation of osmiophilic globules is at times seen in a chloroplast lobe. Cells lack flat scales, whereas three different types of hair‐like scales are present on the flagella. The main pigments of C. stigmatica are those typical of Mamiellales, though siphonein/siphonaxanthin replaces prasinoxanthin and uriolide is absent. The pigment pool of D. tenuilepis is more similar to that of Micromonas pusilla (Butcher) Manton et Parke and of other Mamiellales. The nuclear SSU rDNA phylogeny shows that the inclusion of C. stigmatica and D. tenuilepis in the Mamiellales retains monophyly for the order. The two species form a distinct clade, which is sister to a clade including all the other Mamiellales. Results of rbcL analyses failed to provide phylogenetic information at both the order and species level. No unique morphological or pigment characteristics circumscribe the mamiellalean clade as a whole nor its two daughter clades.     

DIVERSITY AND PHYLOGENETIC PLACEMENT OF BRACTEACOCCUS TEREG (CHLOROPHYCEAE,CHLOROPHYTA) BASED ON 18S RIBOSOMAL RNA GENE SEQUENCE DATA1

Sequence data from the nuclear small-subunit ribosomal RNA gene was obtained for nine strains of Bracteacoccus Tereg, representing at least five morphological species and four distinct geographic locations. These, along with sequence data from two additional chlorophycean taxa, Spongiochloris spongiosa Starr and Ascochloris multinucleata Bold et MacEntee, and 48 published sequences from green algal taxa, were used to determine the phylogenetic placement of Bracteacoccus with respect to other chlorophycean green algae. Results support the monophyly of Bracteacoccus strains, contrasting with patterns observed so far for many other coccoid green algae. The range of variation among Bracteacoccus strains is similar to that of other congeners. Basal body orientation in Bracteacoccus has been interpreted as clockwise; however, the 18S data point to a relationship between Bracteacoccus and taxa with the directly opposed configuration of the flagellar apparatus. No close relationship was found to the multinucleated green coccoids with clockwise orientation of basal bodies, such as Spongiochloris, or to those with parallel basal bodies, such as Spermatozopsis. However, 18S data confirm that the motile and vegetative cells of Bracteacoccus are structurally distinct from the representatives of sphaeroplealean families currently studied. It is premature to reclassify Bracteacoccus until 18S comparisons can be made with additional sphaeroplealean taxa and with algae with similar flagellar structure such as Dictyochloris and Heterochlamydomonas.     

ASSESSING THE RELATIONSHIPS OF AUTOSPORIC AND ZOOSPORIC CHLOROCOCCALEAN GREEN ALGAE WITH 18S rDNA SEQUENCE DATA1

We examined the relationships of autosporic and zoosporic taxa in the Chlorococcales by analyzing available complete nuclear-encoded small-subunit (18S) rRNA gene sequences along with two new sequences from Hydrodictyon reticulatum (L.) Lagerh. and Neochloris vigenis Archibald. Some autosporic taxa grouped with the coenobial hydrodictyacean algae and related unicellular organisms having directly opposed basal bodies. These include Scenedesmus obliquus (Turp.) Kütz. and Chlorella fusca var. vacuolata Shihira et Krauss. Other autosporic organisms, including Chlorella kessleri Fott et Novakova, C. minutissima Fott et Novakova, C. pro-tothecoides Krug., C. vulgaris Beij., Nanochlorum eucaryotum Wilhelm, Eisenbeis, Wild, et Zahn, and Prototheca wickerhamii Soneda et Tubaki, form a separate group. Of the zoosporic taxa examined, this group would appear to have the greatest affinity to organisms having a counterclockwise displacement of basal bodies, the Pleurastrophyceae. Beyond the fact that Ankistrodesmus stipitatus (=A. falcatus var. stipitatus (Chodat) Lemm.) does not group with the latter organisms, its position remains in doubt. None of the autosporic taxa appear to be closely related to chlorophycean organisms possessing a clockwise basal body displacement.     

18S rDNA AND EVOLUTION IN THE DASYCLADALES (CHLOROPHYTA): MODERN LIVING FOSSILS1

Phylogenetic relationships were inferred from parsimony and distance analyses of nuclear small-subunit ribosomal DNA sequences taken from 14 species representing 8 of the 11 extant genera in the Dasycladales. Of 1733 aligned positions, 412 (23.8%) were variable and 251 (61%) of those were phylogenetically informative within the Dasycladales. Secondary structure was analyzed and taken into account during all phases of data analysis. Robustness of the trees was assessed using bootstrap analysis and g₁ statistics of tree-length decay. Strongly supported branches were robust to all methods of analysis regardless of weighting schemes used. The secondary structure of the 18S within the Dasycladales agrees with that of other green algae with the exception of a shared deletion in stemloop E10-1 (ca. 13 nucleotides long), which provides additional support for the uniqueness of this monophyletic group. A molecular clock was calibrated from the dasyclad fossil record and suggests a radiation of the Acetabulariaceae at 120 ± 30 million years (Ma) ago and the Dasycladaceae 215 ± 40 Ma ago. The split of the two lineages from a shared ancestor is estimated at 265 ± 50 Ma ago. Within the Dasycladaceae, Neomeris and Cymopolia are sister taxa, as are Batophora and Chlorocladus. Bornetella groups with the Neomeris and Cymopolia clade in 78% of the bootstrap replicates. Relationships among the Acetabulariaceae show that Acetabularia and Polyphysa do not form monophyletic groups as presently circumscribed. No evidence indicates that Acicularia is the oldest genus. Halicoryne, Chalmasia, and Dasycladus were not included in the analysis. Molecular data provide afresh background perspective from which to discuss the evolution of one of the most ancient lineages of green plants.     

PHYLOGENY OF THE GENUS PYRAMIMONAS (PRASINOPHYCEAE,CHLOROPHYTA) INFERRED FROM THE rbcL GENE1

A 1089-basepair fragment (approx. 75%) of the large subunit of the chloroplast-encoded gene, ribulose-1,5-bis-phosphate carboxylase/oxygenase (rbcL), was sequenced from 16 species of the genus Pyramimonas Schmarda. Electron microscopic and biochemical studies of Pyramimonas, one of the most morphologically diverse genera within the potential sister groups to the chlorophyll a- and b-containing plants, suggest that this genus consists of at least four separate subgenera. Using the homologous sequence of rbcL from Cymbomonas tetramitiformis Schiller (Halosphaeraceae) as an outgroup and applying the maximum likelihood method, we show that the inferred topology is congruent with traditional delimitations of the taxa based on observations of periplast, internal ultrastructure, and biochemical features. A bootstrap analysis also supports division at the subgeneric level; however, the low bootstrap support associated with the deep nodes precludes resolution of these branches. A maximum likelihood relative rate test revealed that the rbcL gene in these single-celled green flagellates has a heterogeneous rate of substitution. The rbcL gene in species of the subgenus Pyramimonas has evolved at an accelerated rate relative to that of congenerics.     

PIGMENTS OF BATHYCOCCUS PRASINOS (PRASINOPHYCEAE): METHODOLOGICAL AND CHEMOSYSTEMATIC IMPLICATIONS1,2

Bathycoccus prasinos Eikrem et Throndsen exhibited a complex carotenoid distribution pattern including the carotenes β,β-carotene (0.8% of total carotenoids) and β, ° Carotene (0.4%) and several xanthophylls. These were prasinoxanthin (49% of total carotenoids), micromonal (16%), neoxanthin (14%), uriolide (7%), violaxanthin (0.8%), 3¹-dehydrouriolide (0.8%), dihydrolutein (0.1%), two partly characterized esterified carotenols (together 10%), and five minor unidentified carotenols (together 2%). The identifications were based on high-performance liquid chromatography (HPLC), thin-layer chromatography (TLC), visible spectroscopy (VIS), and mass spectra (MS) and in part on ¹H nuclear magnetic resonance (NMR), circular dichroism (CD), and chemical derivatization. The carotenoid composition of B. prasinos was related to that of other prasinoxanthin / uriolide / micromonal-producing prasinophytes (Mantoniella squamata, Micromonas pusilla, and Pseudoscourfieldia marina). The relative distribution of chlorophylls (w/w) were chlorophyll a (chl a; 63%), chl b (31%), and an unknown chl c-like chlorophyll (7%) with spectral characteristics similar to magnesium 2,4-divinylphaeoporphyrin a, monomethyl ester, compatible with other prasinophytes. The chemosystematic data and ultrastructural characteristics for the order Mamiellales are discussed. We conclude that HPLC studies alone are insufficient for the identification and characterization of the carotenoids, including the minor carotenoids essential for biosynthetic/chemosystematic considerations.     

基于16S rDNA序列探讨十种臂尾轮虫的系统关系和分类地位

通过对角突臂尾轮虫、尾突臂尾轮虫、裂足臂尾轮虫、剪形臂尾轮虫、方形臂尾轮虫、壶状臂尾轮虫、红臂尾轮虫、镰肜臂尾轮虫、萼花臂尾轮虫和十指臂尾轮虫等十种臂尾轮虫和大肚须足轮虫的线粒体16s rDNA进行扩增和序列测序,结合Genebank 中十指臂尾轮虫的16S rDNA序列,使用MAGE软件构建了NJ(neighbor-joining method)树,使用mrbayes软件构建了贝叶斯树,探讨了十种臂尾轮虫之间的系统关系.结果表明,本研究所涉及的轮虫16S rDNA序列差异百分比均值为14.6%,可作为分子标记应用于轮虫属内种间系统关系研究;系统树均支持将十指臂尾轮虫、裂足臂尾轮虫隶属于臂尾轮属;壶状臂尾轮虫和红臂尾轮虫是两个独立的种.此外,还依据16S rDNA序列变异百分比推测了十种臂尾轮虫的分化时间.     

MONOPHYLY OF THE GENUS CLOSTERIUM AND THE ORDER DESMIDIALES (CHAROPHYCEAE, CHLOROPHYTA) INFERRED FROM NUCLEAR SMALL SUBUNIT rDNA DATA

We newly sequenced the nuclear-encoded small subunit (SSU) rDNA coding region for 21 taxa of the genus Closterium. The new sequences were integrated into an alignment with 13 known sequences of conjugating green algae representing six traditional families (i.e. Zygnemataceae, Mesotaeniaceae, Gonatozygaceae, Peniaceae, Closteriaceae, and Desmidiaceae) and five known charophycean sequences as outgroups. Both maximum likelihood and maximum parsimony analyses supported with high bootstrap values one large clade containing all placoderm desmids (Desmidiales). All the Closterium taxa formed one clade with 100% bootstrap support, indicating their monophyly, but not paraphyly, as suggested earlier. As to the taxa within the genus Closterium , we found two clades of morphologically closely related taxa in both maximum likelihood and maximum parsimony trees. They corresponded to the C. calosporum species complex and the C. moniliferum-ehrenbergii species complex. It is of particular interest that the homothallic entity of C. moniliferum v. moniliferum was distinguished from and ancestral to all other entities of the C. moniliferum-ehrenbergii species complex. Superimposing all 50 charophycean sequences on the higher order SSU rRNA structure model of Closterium , we investigated degrees of nucleotide conservation at a given position in the nucleotide sequence. A characteristic "signature" structure to the genus Closterium was found as an additional helix at the tip of V1 region. In addition, eight base deletions at the tip of helix 10 were found to be characteristic of the C. calosporum species complex, C. gracile , C. incurvum , C. pleurodermatum , and C. pusillum v. maius. These taxa formed one clade with an 82% bootstrap value in maximum parsimony analysis.     

PHYLOGENY OF THE SUBFAMILY SCOTIELLOCYSTOIDEAE (CHLOROPHYCEAE, CHLOROPHYTA) AND RELATED TAXA INFERRED FROM 18S RIBOSOMAL RNA GENE SEQUENCE DATA

Nuclear-encoded small subunit ribosomal RNA gene (18SrDNA) sequences were determined for Coelastrella multistriata (Trenkwalder) Kalina et Punčochářová, two species of Scotiellopsis ( S. oocystiformis (Lund) Kalina et Punčochářová and S. terrestris (Reisigl) Kalina et Punčochářová) and two species of Muriella ( M. aurantiaca Vischer and M. terrestris Boye- Petersen). Coelastrella and Scotiellopsis are members of the subfamily Scotiellocystoideae, and Muriella is a member of the subfamily Chlorelloideae in the family Chlorellaceae. Phylogenetic trees were constructed based on these sequence data and on previously known 18SrDNA sequences of 25 taxa. Coelastrella and Scotiellopsis were closely related to each other and formed a cluster with Scenedesmus vacuolatus (Shihira et Krauss) Kessler et al. This cluster shared a monophyletic ancestry with other Scenedesmus species. Muriella aurantiaca formed a sister relationship with the monophyletic lineage of Scenedesmus. However, another species, M. terrestris, was placed in the Trebouxiophyceae and was strongly related to Chlorella. The genus Mychonastes belonging to the Scotiellocystoideae was also not monophyletic. This study suggests that the subfamily Scotiellocystoideae should be removed from the Chlorellaceae.     

FLAGELLAR HAIRS IN PRASINOPHYTES (CHLOROPHYTA): ULTRASTRUCTURE AND DISTRIBUTION ON THE FLAGELLAR SURFACE1

The flagellar hair ultrastructure of 16 strains of species of the prasinophycean genera Mantoniella, Mamiella, Pseudoscourfieldia, Nephroselmis, Tetraselmis, Scherffelia, Pterosperma, and Pyraminonas was examined in detail by whole-mount electron microscopy. The flagellar hairs of all genera displayed a high degree of ultrastructural complexity that was completely conserved within each strain. In all strains, flagellar hairs occurred on the sides of the flagella (lateral hairs); in several strains, special flagellar hairs also were found on the flagellar tips (tip hairs; absent in the Chlorodendrales and in Nephroselmis). Two groups of lateral hairs were distinguished: 1) T-hairs (“Tetraselmis-type” flagellar hairs), characterized by a smooth, tubular shaft of ca. 15 nm diameter and an overall length of 0.5–1.3 μm, and 2) P_t-hairs (“Pterosperma-type lateral flagellar hairs”), which were considerably longer (ca. 1.5–5.4 μm), characterized by a thick shaft of ca. 30 nm diameter, which was covered with a layer of regularly spaced small particles of ca. 10 nm diameter. In both groups of flagellar hairs, a strain-specific number of subunits (1–101) in linear arrangement was attached to the distal end of the shaft. Tip hairs were either structurally related to T-hairs (Mamiellales, Pseudoscourfieldia) or represented a separate group, P_t-hairs (“Pterosperma-type flagellar tip hairs”; Pterosperma, Pyramimonas). In four genera (Mantoniella, Mamiella, Pseudoscourfieldia, Nephroselmis), both groups of lateral hairs occurred together on the same cell. Interestingly in these taxa the P_t-hairs were exclusively attached to the shorter immature flagella (no. 2), but, in contrast, in Mantoniella and Pseudoscourfieldia the tip hairs were restricted to the longer mature flagellum (no. 1). Thus, flagella of different developmental status differ in their hair-scale complement. The occurrence, distribution, and ultrastructure of flagellar hairs can be used to identify and classify prasinophytes at all taxonomic levels.     

PHYLOGENY OF LOBOCHARACIUM (CHLOROPHYCEAE) AND ALLIES: A STUDY OF 18S AND 26S rDNA DATA1

The phylogenetic affinities of Lobocharacium coloradoense were investigated by analysis of combined 18S and 26S rDNA data. Results from both parsimony and likelihood methods supported a close alliance among Lobocharacium, Characiosiphon, and Characiochloris. These three taxa formed a clade near the base of the “Dunaliella” group within the chlamydomonad lineage. Protosiphon, which exhibits a siphonous habit similar to Characiosiphon and Lobocharacium, was not resolved as a close ally of the latter two taxa. The Lobocharacium alliance was characterized by the presence of an attachment pad associated with the nonmotile vegetative stage and pyrenoids that possess cytoplasmic invaginations. The pyrenoid feature is an ultrastructural trait that has now been observed in five different chlorophycean lineages. The Lobocharacium–Characiosiphon–Characiochloris clade is not predicted by any classifications of green algae. Additional taxon and data sampling need to be completed to resolve inconsistencies between the molecular phylogenetic evidence and at least some of the current family‐level taxa.     

LIGHT MICROSCOPY AND ELECTRON MICROSCOPY OF NEPHROSELMIS SPINOSA SP. NOV. (PRASINOPHYCEAE,CHLOROPHYTA)1

Nephroselmis spinosa Suda sp. nov. is described based on LM and EM observations. Two strains of N. spinosa (S222 and SD959‐3) were isolated from sand samples collected from the northwest coast of western Australia. The cells were remarkably right–left flattened and appeared ellipse or bean‐shaped when viewed from their right or left side. A single, parietal, crescent chloroplast was pale green to yellowish green and contained one conspicuous eyespot in its anterior ventral edge near the base of the short flagellum. A pyrenoid with three starch plates was located at the dorsal of the chloroplast. The cells divided by transverse binary cell division, as is common in other species of this genus. This alga possessed four types of body scales, and three scale types were similar to N. olivacea Stein and N. astigmatica Inouye & Pienaar. However, the fourth and outermost scale type was distinctive because although it was a spiny stellate scale with nine spines, one of them extended about 1 μm and was slightly curved with a hook at the end. This scale morphology, an important taxonomic characteristic, has never been described for the genus Nephroselmis. The cell's morphology, pyrenoid structure, hair scales, and cell size were distinctive from previously described Nephroselmis species, and its unique scale characteristic led me to name this newly proposed species “spinosa,” meaning spiny.     

基于28S rDNA基因序列研究十种臂尾轮虫的系统关系和分类地位

通过对角突臂尾轮虫、尾突臂尾轮虫、裂足臂尾轮虫、剪形臂尾轮虫、方形臂尾轮虫、壶状臂尾轮虫、红臂尾轮虫、镰形臂尾轮虫、萼花臂尾轮虫和十指臂尾轮虫等10种臂尾轮虫以及透明囊足轮虫、大肚须足轮虫和晶囊轮虫等其他3种轮虫的28S rDNA序列分析,使用MAGE软件构建这13种轮虫系统发生树(NJ树、ME树、UPGMA树和MP树),探讨了臂尾轮属、须足轮属、晶囊轮属和囊足轮属之间以及10种臂尾轮虫之间的系统关系.结果表明,本研究所涉及的轮虫28S rDNA序列差异百分比均值为30.15%,可作为分子标记应用于轮虫属间和属内种间系统关系研究;系统树均支持将十指臂尾轮虫作为一个独立的支系从臂尾轮属中分离出来;裂足臂尾轮虫应隶属臂尾轮属;壶状臂尾轮虫和红臂尾轮虫是两个独立的种;透明囊足轮虫与臂尾轮属亲缘关系较近.     

OCCURRENCE OF LOROXANTHIN,LOROXANTHIN DECENOATE,AND LOROXANTHIN DODECENOATE IN TETRASELMIS SPECIES (PRASINOPHYCEAE,CHLOROPHYTA)1

The pigment composition of six species of Tetraselmis (Prasinophyceae) was analyzed using improved HPLC methods. All pigment extracts showed three peaks corresponding to unknown carotenoids. The isolated pigments were analyzed using UV–Vis spectroscopy, electrospray ionization–mass spectrometry (ESI–MS), and when carotenoid esters were suspected, gas chromatography–mass spectrometry (GC–MS) of the methyl ester and dimethyloxazoline derivative of the corresponding fatty acid. The new pigments were determined to be loroxanthin, loroxanthin 19‐(2‐decenoate), and loroxanthin 19‐(2‐dodecenoate); this is the first time these pigments have been described in the genus Tetraselmis. Moreover, this is the first report of esterification of 2‐decenoic acid to loroxanthin. The relative contents of these pigments depended on the light regime, with the lowest proportions measured at the highest photon flux density assayed. The implications of the identification of these pigments in the genus Tetraselmis for the pigment types previously described in the class Prasinophyceae are discussed.     

烟夜蛾18S rDNA的克隆及序列分析

利用PCR方法克降得到了烟夜蛾18S rDNA全基因序列,基因全长1904bp;构建了其全长、保守区和非保守区的系统发育树,比较了与其他已知蛾类昆虫18S rDNA全序列的同源性.结果表明,蛾类之间该基因的同源性达到92%以上,利用其多变区构建的发育树更能反映蛾类昆虫的亲缘关系;比较烟夜蛾与棉铃虫的18S rDNA序列发现,两个近缘种之间仅有lO个核苷酸的差异.     

MOLECULAR SYSTEMATICS OF THE FLORIDEOPHYCEAE (RHODOPHYTA) USING NUCLEAR LARGE AND SMALL SUBUNIT rDNA SEQUENCE DATA

Sequence data are presented for approximately 85% of the nuclear large subunit (LSU) rDNA gene for one member of the Bangiophyceae and 47 members of the Florideophyceae, the latter representing all but one of the currently recognized florideophyte orders. Distance, parsimony, and maximum likelihood analyses of these data were used to generate phylogenetic trees, and bootstrap resampling was implemented to infer robustness for distance and parsimony results. LSU phylogenies were congruent with published nuclear small subunit (SSU) rDNA results in that four higher level florideophyte lineages were resolved: lineage 1, containing the order Hildenbrandiales; lineage 2, recovered only under distance analysis, composed of the orders Acrochaetiales, Balliales, Batrachospermales, Corallinales, Nemaliales, Palmariales, and Rhodogorgonales; lineage 3, containing the Ahnfeltiales; and lineage 4, composed of the orders Bonnemaisoniales, Ceramiales, Gelidiales, Gigartinales, Gracilariales, Halymeniales, Plocamiales, and Rhodymeniales. Analyses were also performed on a combined LSU–SSU data set and an SSU-only data set to account for differences in taxon sampling relative to published studies using this latter gene. Combined LSU–SSU analyses resulted in phylogenetic trees of similar topology and support to those obtained from LSU-only analyses. Phylogenetic trees produced from SSU-only analyses differed somewhat in particulars of branching within lineages 2 and 4 but overall were congruent with the LSU-only and combined LSU–SSU results. We close with a discussion of the phylogenetic potential that the LSU has displayed thus far for resolving relationships within the Florideophyceae.