On the kinetics of phytochrome photoconversion in vivo

Summary Samples for spectrophotometric measurement of phytochrome in vivo are not optically thin. For different cross sections of the sample, the rate constant of a photochemical reaction will, therefore, have different values. We have developed a mathematical model, based on the assumption that the rate of phytochrome phototransformation is proportional to the light intensity and that the light intensity gradient in the sample is exponential. Kinetic curves computed with this model conform closely with the measurements. The simplest explanation of the observed kinetics is that there is only one type of phytochrome and that the light intensity gradient in samples that are not too thin, is close to exponential.309th Communication.     

Chromophore: apoprotein interactions in phytochrome A*

Phytochromes are molecular light switches by virtue of their photochromic red/far-red reversibility. The His-324 residue next to the chromophore-linked Cys-323 plays a critical role in conferring photochromism to the tetrapyrrole chromophore in native phytochrome A. The chromophore appears to be enclosed between the amphiphilic α-helical chains in a hydrophobic pocket. The absorbance maxima of both the Pr and the Pfr forms of pea phytochrome A are blue-shifted by 10 and 20 nm, respectively, upon C-terminal truncation. We speculate that the quaternary structure of the phytochrome A molecule involves some interactions of the C-terminal half with the chromophore domain. The Pfr conformation of phytochrome includes an amphiphilic α-helix of the amino terminal chain, which occurs in 113 ms after picosecond photoisomerization of the Pr form. Compared to α-helical folding, unfolding of the α-helix occurs faster in about 310 μs upon phototransformation of the Pfr form of phytochrome A. The photochromic transformation of phytochrome A modulates protein kinase-catalysed phosphorylation sites in vivo and in vitro, but only a subtle local change in conformation is detectable in the phosphorylated phytochromes. This suggests that the post-translational modification serves as a surface label, rather than a transducer-activating trigger, for the recognition of a putative phytochrome receptor.     

Some thoughts about the use of predicted values of the state of phytochrome in plant photomorphogenesis research

Abstract Predicted values of photoequilibrium ratios and rates of photoconversion and cycling, calculated from known optical parameters of purified phytochrome and the spectral photon flux distribution of the light sources used, arc often applied in the evaluation of the relationships between the state of phytochrome and the expression of phytochrome-mediated responses. This is commonly done when the state of phytochrome in vivo cannot be determined experimentally. The ‘predicted’ states of phytochrome may be quite different from the actual ones in vivo for several reasons: the particular set of optical parameters of purified phytochrome used in the calculations and the difficulties encountered in correcting the predicted values for the contribution of the non-photochemical reactions (dark reversion, destruction, synthesis), the effects of the optical properties of the tissue (light attenuation, scattering, trapping) on the rate of phytochrome photo-conversion, and the geometrical relationships between irradiated sample and the light source. At present, in many studies, it is not possible to avoid using predicted values of the state of phytochrome. The limitations imposed by the use of ‘predicted’ values in the interpretation of results obtained in plant photomorphogenesis research should be always clearly stated.     

Phytochrome properties and the molecular environment

In vitro data support a scheme of phytochrome phototransformation involving intermediates in a sequential pathway. The fraction of total phytochrome maintained as intermediate under conditions of pigment cycling as well as the rate of the dark reversion of the far red-absorbing (Pfr) to the red-absorbing form of phytochrome (Pr) has been shown to depend on the molecular environment of the phytochrome molecules. Inverse dark reversion of Pr to Pfr has been observed in vitro. These results contribute toward an understanding of the observed paradoxes between physiological experiments and measurements of the amount and state of phytochrome in vivo. The in vivo spectrophotometric assay measures an average of the properties of phytochrome in different cellular environments, whereas a particular physiological response may be controlled by phytochrome molecules in one particular environment. It is therefore possible that all phytochrome is potentially active and triggers specific responses by virtue of its localization.     

Phytochrome behaves as a dimer in vivo

Abstract It is well established that phytochrome exists as a dimer in vitro. A comparison of the relative photoequilibrium concentrations of P_rP_r, P_rP_fr and P_frP_fr, with the relative sizes of the P_fr-pools which undergo dark reversion in the intact plant, leads to the hypothesis that phytochrome also exists as a dimer in vivo, This hypothesis is in accordance with kinetic properties of the phytochrome system under continuous irradiation. Additional support for this view is provided by the observation that P_fr-destruction after a red light flash, which should favour the formation of P_rP_fr dimers, is paralleled by a decay of P_r, even if the presence of P_r cycled through P_fr can be excluded. Preliminary observations could indicate an interaction of the subunits of a phytochrome dimer during the process of phototransformation.     

Phytochrome regulation of greening in wild type and long-hypocotyl mutants ofArabidopsis thaliana

A brief pulse of red light (R) given to darkgrown seedlings ofArabidopsis thaliana (L.) Heyn. potentiates rapid synthesis of chlorophyll upon transfer to continuous white light. The time course for potentiation of rapid greening shows that a R pulse in the LF (low fluence) range has maximal effect within a few hours, and that there is a small VLF (very low fluence) component as well. Partial reversal of the effect of R by far-red light (FR) indicates that the pulse acts through phytochrome. As it does in the wild-type (WT), a pulse of R accelerates greening of long-hypocotyl (hy) mutants. The extent of induction by the R pulse was about the same in the WT and in allhy mutants studied. Reversibility by FR was greatly decreased in thehy-1 andhy-2 strains. It is possible that these mutants contain a species of phytochrome with defective phototransformation kinetics. If there is such a defective phytochrome species, it nevertheless appears to be active in the potentiation of rapid greening. Dedicated to Professor Hans Mohr on the occasion of his 60th birthday     

Nachweis der Phytochrom-induzierten de novo-Synthese von Phenylalaninammoniumlyase (PAL,E.C.4.3.1.5) in Keimlingen von Sinapis alba L. durch Dichtemarkierung mit Deuterium

Summary Using the in vivo density labeling technique with deuterium oxide it is confirmed that during phytochrome mediated photomorphogenesis in mustard seedlings a true de novo synthesis of phenylalanine ammonia-lyase is induced by active phytochrome (P _fr).     

In vivo phytochrome reversion in immature tissue of the alaska pea seedling

Reversion of far red-absorbing phytochrome to red-absorbing phytochrome without phytochrome destruction (that is, without loss of absorbancy and photoreversibility) occurs in the following tissues of etiolated Alaska pea seedlings (Pisum sativum L.): young radicles (24 hours after start of imbibition), young epicotyls (48 hours after start of imbibition), and the juvenile region of the epicotyl immediately subjacent to the plumule in older epicotyls. Reversion occurs rapidly in the dark during the first 30 minutes following initial phototransformation of red-absorbing phytochrome to far red-absorbing phytochrome. If these tissues are illuminated continuously with red light for 30 minutes, the total amount of phytochrome remains unchanged. Beyond 30 minutes after a single phototransformation or after the start of continuous red irradiation, phytochrome destruction commences. In young radicles, sodium azide inhibits this destruction, but does not affect reversion. In older tissues in which far red-absorbing phytochrome destruction begins immediately upon phototransformation, strong evidence for simultaneous far red-absorbing phytochrome reversion is obtained from comparison of far red-absorbing phytochrome loss in the dark following a single phototransformation with far red-absorbing phytochrome loss under continuous red light.     

Native phytochrome: immunoblot analysis of relative molecular mass and in-vitro proteolytic degradation for several plant species

The relative molecular mass (M_r) of the native phytochrome monomer from etiolated Cucurbita pepo L., Pisum sativum L., Secale cereale L. and Zea mays L. seedlings has been determined using immunoblotting to visualize the chromoprotein in crude extracts subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis. A single phytochrome band is observed for each plant species when the molecule is extracted under conditions previously demonstrated to inhibit the proteolysis of native Avena sativa L. phytochrome. A comparison among plant species indicates that the M_r of native phytochrome is variable: Zea mays=127000; Secale=Avena=124000; Pisum=121000; Cucurbita=120000. The in-vitro phototransformation difference spectrum for native phytochrome from each species is similar to that observed in vivo in each case and is indistinguishable from that described for native Avena phytochrome. The difference minima between the red- and far-red-absorbing forms of the pigment (Pr-Pfr) are all at 730 nm and the spectral change ratios (A_r/A_fr) are near unity. When incubated in crude extracts, phytochrome from all four species is susceptible to Pr-specific limited proteolysis in a manner qualitatively similar to that observed for Avena phytochrome, albeit with slower rates and with the production of different M_r degradation products. Further examination of the in-vitro proteolysis of Avena phytochrome by endogeneous proteases has identified several additional phytochrome degradation products and permitted construction of a peptide map of the molecule. The results indicate that both the 6000- and 4000-M_r polypeptide segments cleaved by Pr-specific proteolysis are located at the NH₂-terminus of the chromoprotein and are adjacent to a 64000-M_r polypeptide that contains the chromophore.Abbreviations and symbols A_minimum phototransformation difference spectrum (Pr-Pfr) minimum - Ig immunoglobulin - Mops 3-(N-morpholino)propanesulfonic acid - M_r relative molecular mass - PAGE polyacrylamide gel electrophoresis - PMSF phenylmethylsulfonyl fluoride - SDS sodium dodecyl sulfate     

Phytochrome Levels Assayed by in vivo Spectrophotometry in Modified Underground Stems and Storage Roots

In vivo spectrophotometric assays were conducted with sections of plant material cut from modified stems and storage roots. Phytochrome levels are highest in sections associated with growth such as buds and cambial regions. Interior tissues of tubers and the scale leaves of bulbs which are storage tissue contain low or no detectable phytochrome. However, in the storage root of Pastinaca saliva L. phytochrome is distributed in both the phloem and central regions, though it is highest in the cambial region. Total phytochrome in Gladiolus corm buds exposed to 5 minutes of red light followed by approximately 24 hours of darkness decreases more than 60 per cent. This rapid loss of detectable phytochrome in Gladiolus corm buds resembles phytochrome destruction in etiolated seedlings.     

Phytochrome photoconversion

The spectral properties of native and modified phytochromes and the molecular events during phytochrome photoconversion, , are reviewed. Steady-state and time-resolved absorption spectra of native phytochrome A, as well as recombinant phytochromes (oat and potato phytochrome A and potato phytochrome B) reconstituted with phycocyanobilin and phytochromobilin as chromophores, are analysed. The vinyl double bond, present at position 18 in phytochromobilin and substituted by an ethyl group in phycocyanobilin, has a considerable influence on the photo-transformation kinetics of phytochromes A and B, evidently due to a strong interaction of this region of the chromophore with the protein surrounding. The kinetics of the phototransformation of potato phytochrome B differs from that of oat phytochrome A (wild-type and recombinant), indicating that the chromophore-protein interaction in phytochrome B is different from that in phytochrome A. It remains to be seen whether this difference is due to the di- versus monocotyledon origin of the phytochromes. Optoacoustic spectroscopy, applied to native oat phytochrome A, afforded thermo-dynamic, structural and kinetic parameters of the Pr→I₇₀₀ and the I₇₀₀→Pr phototransformations. Raman and infrared spectroscopic data for wild-type phytochrome A suggest that the protonated chromophore in Pr undergoes torsions around two single bonds in addition to the Z→E isomerization of the 15 ,16 double bond, and that all transients, possibly with the exception of I_bI, are protonated at the central pyrrole ring.     

In Vivo Properties of Membrane-bound Phytochrome

After a 3-minute irradiation with red light, which saturates the phototransformation from the red light-absorbing form of phytochrome to the far red light absorbing form of phytochrome, about 40% of the phytochrome extractable from hooks of etiolated squash seedlings (Cucurbita pepo L. cv. Black Beauty) can be pelleted as Pfr at 17,000g after 30 minutes. Dark controls yield only 2 to 4% pelletable phytochrome in the form Pr. If a dark period intervenes between red irradiation and extraction, the bound Pfr gradually loses its photoreversibility. The time course for this destruction parallels the time course for phytochrome destruction in vivo following saturating red irradiation. The soluble fraction of phytochrome remains constant. These results suggest that in squash seedlings phytochrome destruction is related exclusively to the fraction which becomes membrane-bound. The induction of phytochrome binding by red light is not completely reversible by far red. In plants given saturating red followed immediately by saturating far red light, 12% of the phytochrome is found in the bound fraction as Pr if the phytochrome extraction is immediate. If a dark period intervenes between red-far red treatment and extraction, the bound phytochrome is released within 2 hours. A model of the binding properties of phytochrome, based on molecular interaction at the membrane is proposed, and possible consequences for the mechanism of action of phytochrome are discussed.     

Phytochrome Pelletability in Barley

Phytochrome pelletability in the 1000 g and 20,000 g pellet from crude homogenates of etiolated Hordeum vulgare L. cv. Ark Royal primary leaves is enhanced by red light in vivo and in vitro. Red enhanced phytochrome pelletability appears different in the 1000 g and 20,000 g pellets after red light in vivo, being irreversible by subsequent far red light in the latter. Mg²⁺ concentration in the range 1–20 mM has no effect on red enhanced phytochrome pelletability. The enhancement of pelletability is reduced by low pH and high 2-mercaptoethanol concentration, conditions which lead to a high level of pelletability of the far red absorbing form of phytochrome. Washing these pellets at high pH or low 2-mercaptoethanol concentration reveals the red enhancement of pelletability. The results are discussed in terms of a possible two point attachment of phytochrome to membranes.     

The aurea mutant of tomato is deficient in spectrophotometrically and immunochemically detectable phytochrome

The aurea locus mutant (au ^w) of tomato contains less than 5% of the level of phytochrome in wild-type tissue as measured by in vivo difference spectroscopy. Immunoblot analysis using antibodies directed against etiolated-oat phytochrome demonstrates that crude extracts of etiolated mutant tissue are deficient in a major immunodetectable protein (116 kDa) normally present in the parent wild type. Analyses of wild-type tissue extracts strongly indicate that the 116-kDa protein is phytochrome by showing that this protein: a) is degraded more rapidly in vitro after a brief far-red irradiation than after a brief red irradiation (Vierstra RD, Quail PH, Planta 156: 158–165, 1982); b) contains a covalently bound chromophore as detected by Zn-chromophore fluorescence on nitrocellulose blots; and c) has an apparent molecular mass comparable to phytochrome from other species on size exclusion chromatography under non-denaturing conditions. The demonstration that the aurea mutant is deficient in this 116-kDa phytochrome indicates that the lack of spectrally detectable phytochrome in this mutant is the result of a lesion which affects the abundance of the phytochrome molecule as opposed to its spectral integrity.     

PHYTOCHROME LEVELS DETECTABLE BY IN VIVO SPECTROPHOTOMETRY IN PLANT PARTS GROWN OR STORED IN THE LIGHT

Tissues of fruits and vegetables from local markets were tested for reversible optical density changes at 660 and 730 m μ as a phytochrome assay. Over one-third showed activity, which bore no obvious relationship to any morphological or taxonomic category. Reports of high activity in Brassica oleracea botrytis (cauliflower) were confirmed, but the highest activities were in tissues from roots of Pastinaca (parsnip), receptacles of Cynara (globe artichoke) and vegetative buds of Brassica oleracea gemmifera (Brussels sprouts). Activity in Pastinaca and Cynara appears light-stable, with the far-red-absorbing form reverting to the red-absorbing form more or less quantitatively in darkness. Activity in B. o. gemmifera, by contrast, is light-labile, decaying without any apparent reversion; the high level of phytochrome initially present is due to light exclusion by the surrounding green tissues. Several of the materials described should prove valuable for further investigations on the nature and role of phytochrome.     

Phytochrome in green tissue: Spectral and immunochemical evidence for two distinct molecular species of phytochrome in light-grown Avena sativa L.

A method is described for the extraction of phytochrome from chlorophyllous shoots of Avena sativa L. Poly(ethyleneimine) and salt fractionation are used to reduce chlorophyll and to increase the phytochrome concentration sufficiently to permit spectral and immunochemical analyses. The phototransformation difference spectrum of this phytochrome is distinct from that of phytochrome from etiolated shoots in that the maximum in the red region of the difference spectrum is shifted about 15 nm to a shorter wavelength. Immunochemical probing of electroblotted proteins (Western blotting), using a method sensitive to 50 pg, demonstrates the presence of two polypeptides in green tissue that bind antiphytochrome antibodies: a predominant species with a relative molecular mass (M_r) of 118000 and a lesser-abundant 124000-M_r polypeptide. Under nondenaturing conditions all of the 124000-M_r species is immunoprecipitable, but the 118000-M_r species remains in the supernatant. Peptide mapping and immunochemical analysis with monoclonal antibodies show that the 118000-M_r species has structural features that differ from etiolated-oat phytochrome. Mixing experiments show that these structural differences are intrinsic to the molecular species from these two tissues rather than being the result of post-homogenization modifications or interfering substances in the green-tissue extracts. Together the data indicate that the phytochrome that predominates in green-tissue has a polypeptide distinct from the well-characterized molecule from etiolated tissue.Abbreviations and symbols Ig immunoglobulin - M_r relative molecular mass - Pfr, Pr far-red-absorbing and red-absorbing forms of phytochrome respectively - SDS-PAGE sodium dodecyl sulfate-polyacrylamide gel electrophoresis - _max ^R , _max ^FR maxima of the phototransformation difference spectrum in the red and far-red region     

Phytochrome decay in seedlings under continuous incandescent light

Summary Under continuous high intensity incandescent light the decay of phytochrome in Amaranthus seedlings deviates from the predicted first order rate characteristic of the P _fr/P _total ratio maintained. This deviation takes the form of a slower decay than would be predicted and is only observed at high intensities. Experiments are presented to test the hypothesis that this reduced rate of decay is the result of a high level of phytochrome intermediates maintained under high intensity incandescent light. Accumulation of intermediates under these conditions has been demonstrated using a quasi-continuous measuring spectrophotometer. They are weakly absorbing and their concentration increases with light intensity. Although they form P _fr in darkness, it is proposed that they do not decay. The model predicts that in a sample cuvette, where a light intensity gradient exists, there is more probability of a phytochrome molecule being presnet as P _fr at the back of the cuvette: the region of lowest light intensity. Under conditions which favour phytochrome decay, a preferential loss of phytochrome should result at the back of the cuvette and an increasingly higher proportion of the remaining phytochrome will consequently be measured as intermediate as the experiment progresses. The results confirm the hypothesis and in addition, after 60 min incandescent light, demonstrate an accumulation of intermediates which form P _fr with a longer half-life that at the begining of the experiment. Pisum epicotyl hooks show no such intermediate accumulation or preferential decay at the back of the cuvette, which is in agreement with the observed first order phytochrome decay under high intensity incandescent light. A scheme is presented explaining the results on the basis of the decay process.Abbreviations FR far-red light - R red light - P phytochrome - P _fr far-red-absorbing form of P - P _r red-absorbing form of P 321st communication of this Laboratory.     

Differential reactivity of the red-and far-red-absorbing forms of phytochrome to [14C] N-ethyl maleimide

Summary The red-absorbing form (P _r ) and the far-red absorbing form (P _fr ) of undergraded, high-molecular-weight phytochrome from rye (Secale cereale L.) seedlings were examined for their reactivity toward N-ethyl-[¹⁴C]maleimide ([¹⁴C]-NEM). After pre-treatment of P _r with cold NEM and extensive dialysis, photoconversion to P _fr and treatment with [¹⁴C]NEM resulted in an approximately 70% increase in incorporation of radioactivity over the dark control. These results are discussed in relation to the view that phytochrome undergoes a protein conformational change upon phototransformation.     

Phytochrome Photoconversion in Vivo: Comparison between Measured and Predicted Rates

The measured rates of phytochrome photoconversion in vivo, in etiolated cabbage (Brassica oleracea L.) seedlings and cucumber (Cucumis sativus L.) cotyledons, under blue, red, and far red irradiation, are significantly different from those predicted on the basis of the spectral photon flux distributions of the light sources and optical parameters of purified phytochrome. The geometrical relationships between the light source and the irradiated sample affect the rate of phytochrome photoconversion, which is significantly faster in cabbage seedling laying flat on white, wet filter paper than in seedlings in a vertical position. Light reflected from the white filter paper on the bottom of the dish contributes significantly to phytochrome photoconversion. Substituting the white filter paper with a less reflective black one results in a significant decrease of the rate of phytochrome photoconversion in cucumber cotyledons.     

Light-Dependent Chloroplast Reorientation in Mougeotia and Mesotaenium: Riased by Pigment-Regulated Plasmalemma Anchorage Sites to Actin Filaments?

Conjugatophycean green algae, such as Mougeotia and Mesotaenium, are presumably the most ancient organisms to show phytochrome-mediated photomodulatory processes, i.e. chloroplast reorientational movements. Experiments have provided striking evidence for a dichroic mode of light absorption by the phytochrome molecules located at the periphery of the cylindrical cell; in addition, the transition moment of the chromophoric group of phytochrome has been shown to change by a fixed angle upon conversion of P_r to P_fr and vice versa. Consequently, a hypothesis has been put forward involving a tetrapolar phytochrome gradient at the plasmalemma. This presumed pigment pattern precisely controls chloroplast reorientation in the low-irradiance response. Intriguingly, a blue-light absorbing pigment is expressed in Mougeotia as well, which also mediates low-irradiance response via a presumed tetrapolar gradient, apparently independent of the phytochrome. Two hypotheses for the controlling mechanism of chloroplast reorientation have been put forward:

• a) Coupling of the influx of calcium through the plasmalemma to the tetrapolar gradient of the sensor pigment proper, resulting in a tetrapolar gradient of calcium in the cytoplasm. This is the “reorientation via calcium” hypothesis.
• b) Coupling of actin anchorage sites on the plasmalemma to the tetrapolar gradient of the sensor pigment proper, resulting in a tetrapolar gradient of actin anchorage sites. Cytoplasmic calcium, released from internal stores or taken up through the plasmalemma, triggers actomyosin interaction. This is the “reorientation via anchorage sites” hypothesis.

Consistent with the latter hypothesis, photoregulation by two steps seems to be indicated, (i) cytoplasmic initiation of actomyosin interaction, (ii) the graded formation of plasmalemma anchorage sites for actin filaments.