Conservation status assessment of the Sharp‐shinned Hawk,an endangered insular raptor in Puerto Rico

Sharp‐shinned Hawks (Accipiter striatus) are forest raptors that are widely distributed in the Americas. A subspecies endemic to Puerto Rico (A. s. venator) is listed as endangered and restricted to mature and old secondary montane forests and shade coffee plantations. However, recent information about the population status and distribution of Puerto Rican Sharp‐shinned Hawks is lacking. We developed a spatial geographic distribution model for Sharp‐shinned Hawks in Puerto Rico from 33 locations collected during four breeding seasons (2013–2016) using biologically relevant landscape variables (aspect, canopy closure, elevation, rainfall, slope, and terrain roughness). Elevation accounted for 89.8% of the model fit and predicted that the greatest probability of occurrence of Sharp‐shinned Hawks in Puerto Rico (> 60%) was at elevations above 900 m. Based on our model, an estimated 56.1 km² of habitat exists in Puerto Rico with a high probability of occurrence. This total represents ~0.6% of the island's area. Public lands included 43.8% of habitat with high probability of occurrence (24.6 km²), 96% of which was located within four protected areas. Our results suggest that Sharp‐shinned Hawks are rare in Puerto Rico and restricted to the higher elevations of the Cordillera Central. Additional research is needed to identify and address ecological limiting factors, and recovery actions are needed to avoid the extinction of this endemic island raptor.     

Quantifying Tropical Dry Forest Type and Succession: Substantial Improvement with LiDAR

Improved technologies are needed to advance our knowledge of the biophysical and human factors influencing tropical dry forests, one of the world's most threatened ecosystems. We evaluated the use of light detection and ranging (LiDAR) data to address two major needs in remote sensing of tropical dry forests, i.e., classification of forest types and delineation of forest successional status. We evaluated LiDAR‐derived measures of three‐dimensional canopy structure and subcanopy topography using classification‐tree techniques to separate different dry forest types and successional stages in the Guánica Biosphere Reserve in Puerto Rico. We compared the LiDAR‐based results with classifications made from commonly used remote sensing data, including Landsat satellite imagery and radar‐based topographic data. The accuracy of the LiDAR‐based forest type classification (including native‐ and exotic‐dominated forest classes) was substantially higher than those from previously available data (kappa = 0.90 and 0.63, respectively). The best result was obtained when combining LiDAR‐derived metrics of canopy structure and topography, and adding Landsat spectral data did not improve the classification. For the second objective, we observed that LiDAR‐derived variables of vegetation structure were better predictors of forest successional status (i.e., mid‐secondary, late‐secondary, and primary forests) than was spectral information from Landsat. Importantly, the key LiDAR predictors identified within each classification‐tree model agreed with previous ecological knowledge of these forests. Our study highlights the value of LiDAR remote sensing for assessing tropical dry forests, reinforcing the potential for this novel technology to advance research and management of tropical forests in general.     

Dictyostelid Cellular Slime Molds in Canopy Soils of Tropical Forests1

The occurrence and distribution of dictyostelid cellular slime molds (CSM) in the mantle of dead organic matter (literally a “canopy soil”) at the bases of large epiphytes were studied in the Luquillo Experimental Forest of north-eastern Puerto Rico. CSM were isolated from 18 of 50 samples collected from this microhabitat, and four different species were recovered. Dictyostelium purpureum was the single most abundant species and represented almost half (48%) of all clones isolated during the study. Total densities (clones/g) averaged only 38 in the five forest types examined, but densities > 75 were recorded for two forest types. Relative abundance of CSM in canopy soils of the five forest types followed the same general pattern displayed by these organisms in forest floor litter, but a particular species was not necessarily common to both microhabitats in a given forest type.     

Colonization of islands in the Mona Passage by endemic dwarf geckoes (genus Sphaerodactylus) reconstructed with mitochondrial phylogeny

Little is known about the natural history of the Sphaerodactylus species endemic to the three islands located in the Mona Passage separating the Greater Antillean islands of Hispaniola and Puerto Rico. In this study, parts of two mitochondrial genes, 16S rRNA and 12S rRNA, were sequenced to determine the relationships between the sphaerodactylids that live in the Mona Passage and other Caribbean species from the same genus. While the main goal was to identify the biogeographical origin of these species, we also identified a genetically distinct type of dwarf gecko that warrants future evaluation as a possible new species. According to the reconstructed phylogenies, we propose a stepwise model of colonization wherein S. nicholsi from southwestern Puerto Rico or a very close ancestor gave rise through a founder event to Sphaerodactylus monensis on Mona Island. In a similar fashion, S. monensis or a very close ancestor on Mona Island gave rise to S. levinsi on Desecheo Island. This study also suggests that the most recent common ancestor between the species from the islands in the Mona Passage and Puerto Rico existed approximately 3 MYA.     

New microsatellite markers for the ectomycorrhizal fungus Pisolithus tinctorius sensu stricto reveal the genetic structure of US and Puerto Rican populations

The ectomycorrhizal fungus Pisolithus tinctorius has been introduced to many areas around the world as a source of inoculum for pine plantations. However, little is known about the genetic structure of fungal populations in their introduced habitats. To study the genetics of exotic P. tinctorius populations, we developed and employed seven new microsatellite markers and compared samples from Puerto Rico (exotic range) and the eastern United States (native range). Bayesian cluster analysis, neighbor joining analysis and F_ST values all strongly separated Puerto Rican populations from North American populations. Consistent with a founder effect, populations from Puerto Rico had reduced allelic richness when compared to samples from the United States. The genetic structure of P. tinctorius populations in Puerto Rico is weak to modest and is not correlated with geographic distance reflecting anthropogenic movement of inoculum with forestry practices.     

Biology of the Mongoose (Herpestes javanicus) in a Rain Forest of Puerto Rico1

Ecological aspects of the mongoose (Herpestes javanicus) were studied in the Luquillo Mountains, a rain forest region in eastern Puerto Rico. Information was obtained by removal trapping of mongoose from grids placed in tree plantations, colorado and tabonuco forests. Trapping efficiency was two mongoose per 100 trap-days, suggesting mongoose abundance is low in wet montane forests of Puerto Rico. Sex ratio was biased (2.6:1) in favor of males. Body masses of male mongoose inhabiting rain forests of the Luquillo Mountains were larger than those in dry forests at Guánica (P < 0.0001). Stomach contents from 18 mongoose were examined, animal matter comprised 75 percent of the total food items encountered. Of these, 33 percent were from vertebrates. The food items most frequently encountered were lizards (Anolis spp.), centipedes (Scolopendra spp.), and cockroaches (Blatellidae).     

Regeneration filters in post-agricultural fields of Puerto Rico and Ecuador

To better understand how rainforest regenerates after agriculture I sampled the seed rain and seed bank, and set out seeds and seedlings, on microsites defined by distance to the forest in fields both in Puerto Rico and Ecuador. I found that (1) total seeds, species richness and life-form richness were twice as great in the Ecuador seed rain compared to Puerto Rico but Puerto Rico seeds were more evenly distributed among species and (2) total seedlings from the seed bank were similar between Puerto Rico and Ecuador, (3) the majority of seeds were lost to predation among all species and study sites, (4) seed disease was absent in P. aduncum and Miconia prasina, and no seeds germinated for Gonzalagunia spicata and P. riparia, (5) in Ecuador pathogenic disease claimed more seeds than germinated for all species, and Solanum ovalifolium was the only species that had seeds germinate but did not lose seeds to disease, (6) also in Ecuador, insect predation was significantly lower in the forest border for P. aduncum, and seed disease was significantly greater at the 10 m micro site for S. ovalifolium, (7) distance has a significant effect on seedling height and basal diameter, (8) losses of leaf area due to herbivory and pathogens were always low and (9) biomass and leaf specific mass were significantly reduced in the border and forest microsites. I conclude that Ecuador fields had more seeds, species, and life-forms than Puerto Rico fields, predation was the most severe post-dispersal seed filter in all fields, seeds that survived predation on Puerto Rico were lost either to disease or germination but to both mechanisms in Ecuador, all three seed mechanisms in Ecuador fields showed distance effects of seedling growth but not survivorship.     

A historical and comparative review of 50 years of root data collection in Puerto Rico

Fine roots play an important role in plant nutrition, as well as in carbon, water, and nutrient cycling. Fine roots account for a third of terrestrial net primary production (NPP), and inclusion of their structure and function in global carbon models should improve predictions of ecosystem responses to climate change. However, studies focusing on underground plant components are much less frequent than those on aboveground structure. This is more marked in the tropics, where one-third of the planet's terrestrial NPP is produced. Some tropical forests have been more represented in the literature than others, as demonstrated in the collective studies in Puerto Rico. This Caribbean island's biodiversity, frequency of natural disturbances, ease of access to forests, and long-term plots have created an ideal place for the study of tropical ecological processes. This literature review emphasizes 50 years of root research and patterns revealed around Puerto Rico. The data in this review were compiled from scientific publications, conference reports, symposiums, and raw data shared by some researches. Emergent patterns include the shallow distribution of fine roots, the great variation in root biomass among different forest types, little variation in root phosphorus concentrations, the slow recovery of root biomass after Hurricane Hugo, and the fact that most data on roots come from the wet tropical Luquillo Experimental Forest, causing other habitat types to be underrepresented. This review also shows the gaps in knowledge about fine roots in the island's ecosystems, which should be used to promote and guide future studies.     

Climate as a driver of tropical insular diversity: comparative phylogeography of two ecologically distinctive frogs in Puerto Rico

The effects of late Quaternary climate on distributions and evolutionary dynamics of insular species are poorly understood in most tropical archipelagoes. We used ecological niche models under past and current climate to derive hypotheses regarding how stable climatic conditions shaped genetic diversity in two ecologically distinctive frogs in Puerto Rico. Whereas the mountain coquí Eleutherodactylus portoricensis is restricted to montane forest in the Cayey and Luquillo Mountains, the red‐eyed coquí E. antillensis is a habitat generalist distributed across the entire Puerto Rican Bank (Puerto Rico and the Virgin Islands, excluding St Croix). To test our hypotheses, we conducted phylogeographic and population genetic analyses based on mitochondrial and nuclear loci of each species across their range in Puerto Rico. Patterns of population differentiation in E. portoricensis, but not in E. antillensis, supported our hypotheses. For E. portoricensis, these patterns include: individuals isolated by long‐term unsuitable climate in the Río Grande de Loíza Basin in eastern Puerto Rico belong to different genetic clusters; past and current climate strongly predicted genetic differentiation; and Cayey and Luquillo Mountains populations split prior to the last interglacial. For E. antillensis, these patterns include: genetic clusters did not fully correspond to predicted long‐term unsuitable climate; and past and current climate weakly predicted patterns of genetic differentiation. Genetic signatures in E. antillensis are consistent with a recent range expansion into western Puerto Rico, possibly resulting from climate change and anthropogenic influences. As predicted, regions with a large area of long‐term suitable climate were associated with higher genetic diversity in both species, suggesting larger and more stable populations. Finally, we discussed the implications of our findings for developing evidence‐based management decisions for E. portoricensis, a taxon of special concern. Our findings illustrate the role of persistent suitable climatic conditions in promoting the persistence and diversification of tropical island organisms.     

Forest Regeneration in a Chronosequence of Tropical Abandoned Pastures: Implications for Restoration Ecology

During the mid‐1900s, most of the island of Puerto Rico was deforested, but a shift in the economy from agriculture to small industry beginning in the 1950s resulted in the abandonment of agricultural lands and recovery of secondary forest. This unique history provides an excellent opportunity to study secondary forest succession and suggest strategies for tropical forest restoration. To determine the pattern of secondary succession, we describe the woody vegetation in 71 abandoned pastures and forest sites in four regions of Puerto Rico. The density, basal area, aboveground biomass, and species richness of the secondary forest sites were similar to those of the old growth forest sites (>80 yr) after approximately 40 years. The dominant species that colonized recently abandoned pastures occurred over a broad elevational range and are widespread in the neotropics. The species richness of Puerto Rican secondary forests recovered rapidly, but the species composition was quite different in comparison with old growth forest sites, suggesting that enrichment planting will be necessary to restore the original composition. Exotic species were some of the most abundant species in the secondary forest, but their long‐term impact depended on life history characteristics of each species. These data demonstrate that one restoration strategy for tropical forest in abandoned pastures is simply to protect the areas from fire, and allow natural regeneration to produce secondary forest. This strategy will be most effective if remnant forest (i.e., seed sources) still exist in the landscape and soils have not been highly degraded. Patterns of forest recovery also suggest strategies for accelerating natural recovery by planting a suite of generalist species that are common in recently abandoned pastures in Puerto Rico and throughout much of the neotropics.     

Bryophyte Species Diversity in Secondary Forests Dominated by the Introduced Species Spathodea campanulata Beauv. in Puerto Rico

The introduced tree species Spathodea campanulata (Bignoniaceae) forms novel forests in Puerto Rico, these having emerged after the abandonment of fields in the mid‐20th century and resulting in forests with a new species composition. We assessed bryophyte species richness in these novel forests and sought correlations with geological substrate, past land use, forest edge and patch area, forest structure, elevation, microhabitat diversity, tree species richness, and microclimatic conditions. Transects were established (edge and forest interior) in nine moist forest patches dominated by Spathodea in north‐central Puerto Rico. These Spathodea forest patches ranged from 0.6 to 9 ha. ANOVA, Chi‐square, correlation, and cluster analyses were used in data analyses. We found 57 bryophyte species. There was a significant difference in bryophyte richness among patches. Those on karst exhibited highest bryophyte richness due to microhabitat diversity, past land use, and shorter hydroperiods. Alluvial sites scored lowest in bryophyte species richness, and forest structure was important for bryophyte communities on these sites. Significant differences in temperature, relative humidity, and light intensity were observed between edge and forest interior. These appeared important for establishing bryophyte species cover but not richness and composition. Microhabitat diversity, patch area, and forest age were more related to bryophyte species richness than elevation, exposed edge, and tree species richness, regardless of geologic substrate. Collectively, Spathodea patches were similar to mature forests on the Island with respect to bryophyte species richness and composition. Novel Spathodea forests have conservation value due to their habitat suitability for bryophyte communities.     

Land-Use History and Forest Regeneration in the Cayey Mountains, Puerto Rico

Although deforestation continues to be a major threat to tropical biodiversity, abandonment of agricultural land in Puerto Rico provides an opportunity to study long-term patterns of secondary forest regeneration. Using aerial photographs from 1937, 1967, and 1995, we determined land-use history for 2443 ha in the Cayey Mountains. Pastures were the dominant land cover in 1937 and <20% of the area was classified as forest. Between 1937 and 1995, forest cover increased to 62% due to widespread abandonment of agriculture. To examine the effect of historic land use on current forest structure and species composition, we sampled secondary forests in 24 abandoned pastures, 9 abandoned coffee plantations and 4 old-growth forest sites. Sites were located on two soil types along an elevational gradient (125–710 m) and included a chronosequence from 4 to over 80 years old. After 25–30 years, basal area and species richness in secondary forest sites derived from abandoned pastures and coffee plantations were similar to old-growth forest sites. The species composition of secondary forests derived from abandoned pastures and coffee plantations remained distinct from old-growth forest. In addition to historic land use, age and elevation were important environmental variables explaining variation in secondary forest species composition. Non-indigenous species were common in recently abandoned pastures and coffee plantations, but their importance declined in the older sites. This study demonstrates that secondary forests on private land can be an important component of the conservation of tropical tree biodiversity. Received 16 June 1999; Accepted 8 October 1999.     

Forest regeneration in abandoned coffee plantations and pastures in the Cordillera Central of Puerto Rico

Forest structure and species composition were described in abandonedshade and sun coffee plantations and abandoned pastures in Puerto Rico. Foreststructural characteristics were similar to older forest sites afterapproximately 30 yr of recovery. The historical presence of shadecoffee plantations as the dominant agricultural activity in the region hasresulted in the homogenization of secondary forest composition. The continuousdominance of Coffea arabica and species used for shade inabandoned shade coffee contributed to a slower rate of species compositionchange in comparison to abandoned pastures. Abandoned pastures were initiallycolonized by a group of light demanding and/or wind dispersed species and thenby shade tolerant species characteristic of abandoned shade coffee plantations,suggesting that the secondary forests of abandoned shade coffee plantation arethe major source of species in this landscape. The presence of a few isolatedbig trees in sun coffee plantations appeared to facilitate colonization ofwoodyspecies similar in composition to abandoned shade coffee plantations. In amultivariate analysis, time since abandonment and elevation were the variablesthat explained the majority of variability in species composition among sites.However, a few native species (e.g. Guarea guidonia,Casearia sylvestris, Ocotealeucoxylon) were common regardless of land use history or elevation.In contrast, important old forest species (e.g. Sloaneaberteriana, Dacryodes excelsa,Manilkara bidentata) were rare or absent from most of thesecondary forest stands suggesting the need to reintroduce these species. Landmanagement and conservation efforts can be improved by incorporating theeffectsof land use history on secondary forest dynamics.     

The Stability of Invertebrate Communities in Bromeliad Phytotelmata in a Rain Forest Subject to Hurricanes

Communities of invertebrate animals in lower canopy and saxicolous tank bromeliads, originally studied in 1993–1997, were resampled along an elevational gradient in tabonuco, palo colorado, and dwarf or cloud forest in Puerto Rico in 2010. These Puerto Rican montane rain forests were impacted strongly by hurricanes in 1989 and 1998, so the surveys in the 1990s represented 4–8 yr of post‐hurricane recovery, whereas our recent survey represents 12 yr of post‐hurricane recovery. At most elevations, species diversity, both within individual bromeliads and at the forest scale, declined between the 1990s and 2010. This decline in diversity between decades is associated with reductions in bromeliad density as the canopy progressively closed during recovery from hurricane damage. The observed decline in alpha and gamma diversity appears to have involved the loss of rarer species, as might be expected from standard metapopulation theory. By contrast, the most common species were remarkably stable in abundance, composition, and frequency of occurrence over the two decades. In the lowermost tabonuco forest, two endemic bromeliad specialists, restricted to bromeliads for their entire life cycle, were not found on resampling. This study also demonstrates that, at least in Puerto Rico, sets of ten plants from each forest were sufficient to monitor bromeliad invertebrate populations and their diversity over time.     

The seroepidemiology of dengue in a US military population based in Puerto Rico during the early phase of the Zika pandemic

Understanding the burden and risk factors of dengue virus (DENV) infection in Puerto Rico is important for the prevention of dengue in local, traveler and military populations. Using sera from the Department of Defense Serum Repository, we estimated the prevalence and predictors of DENV seropositivity in those who had served in Puerto Rico, stratified by birth or prior residence (“birth/residence”) in dengue-endemic versus non-endemic regions. We selected sera collected in early 2015 from 500 U.S. military members, a time-point also permitting detection of early cryptic Zika virus (ZIKV) circulation. 87.2% were born or resided in a DENV-endemic area before their military service in Puerto Rico. A high-throughput, flow-cytometry-based neutralization assay was employed to screen sera for ZIKV and DENV neutralizing antibodies, and confirmatory testing was done by plaque-reduction neutralization test (PRNT). We identified one Puerto Rico resident who seroconverted to ZIKV by June 2015, suggesting cryptic ZIKV circulation in Puerto Rico at least 4 months before the first reported cases. A further six PRNT-positive presumptive ZIKV infections which were resolved as DENV infections only by the use of paired sera. We noted 66.8% of the total study sample was DENV seropositive by early 2015. Logistic regression analysis indicated that birth/residence in a dengue non-endemic region (before military service in Puerto Rico) was associated with a lower odds of DENV exposure by January—June 2015 (aOR = 0.28, p = 0.001). Among those with birth/residence in a non-endemic country, we noted moderate evidence to support increase in odds of DENV exposure for each year of military service in Puerto Rico (aOR = 1.58, p = 0.06), but no association with age. In those with birth/residence in dengue-endemic regions (before military service in Puerto Rico), we noted that age (aOR = 1.04, p = 0.02), rather than duration of Puerto Rico service, was associated with dengue seropositivity, suggesting earlier lifetime DENV exposure. Our findings provide insights into the burden and predictors of DENV infection in local, traveler and military populations in Puerto Rico. Our study also highlights substantial PRNT ZIKV false-positivity when paired sera are not available, even during periods of very low ZIKV prevalence.     

Acaricide susceptibility ofAmblyomma variegatum (Acari: Ixodidae) from Puerto Rico and Guadeloupe

Base-line data on acaricide susceptibility of larvae and of larvae and nymphs of the tropical bont tick,Amblyomma variegatum (Fabricius), from Puerto Rico and Guadeloupe were collected on 14 and six compounds, respectively. Nymphs 7–8 weeks old from Puerto Rico and Guadeloupe, and larvae 3–4 weeks old from Guadeloupe, were exposed for 24 or 48 h to residues of acetone dilutions of technical-grade or commercial formulations of acaricides on disposable glass pipettes. Effectiveness of the acaricides in killing nymphs (lc ₅₀) from Guadeloupe and Puerto Rico ranged from 0.0001% for deltamethrin to 0.269% for malathion. For Puerto Rico, the susceptibility to toxaphene and amitraz, but not to dioxathion, increased with increasing age of nymphs. Nymphs from Guadeloupe were 9.5 times more susceptible to chlorpyrifos than nymphs from Puerto Rico. The susceptibility of larvae from Guadeloupe to acaricides tested ranged fromlc ₅₀ 0.000012% for deltamethrin to 0.0141% for ethion. There was no evidence of development of acaricide resistance in ticks from Guadeloupe or Puerto Rico.     

关于我国林业行业性空间管理框架的思考

评析了中国林业生产上传统的三种行业性空间管理框架的特点与问题,认为这些空间管理框架虽然都具有各自的独特功能,但普遍缺乏生态内涵,不足以有效指导中国今后以“生态利用”为中心的森林可持续经营管理活动以及各项林业生态环境建设工作。有必要从土地景观分类的途径提出一些新的、具有更明确生态学依据和内涵的行业性空间管理框架。对我国的林业发展来说,这虽然要付出一笔高昂的固定成本,但是一个科学的空间管理框架将大大降低未来生态林业行业性运行的边际成本。     

Composition Patterns of Caribbean Limestone Forests: Are Parsimony,Classification, and Ordination Analyses Congruent?1

This study presents an analysis of floristic composition patterns for limestone vegetation from three Caribbean islands: Hispaniola, Mona, and Puerto Rico. The physical setting of these communities varies from very dry to wet climates, and from ridgetops, slopes, to plateaus. Consequently, vegetation communities have variable species composition. The questions addressed were: (1) What are the patterns of species composition among limestone vegetation types based on a parsimony analysis of species assemblages (PASA) and how congruent are they widi geography, climate, topography, and vegetation physiognomy? and (2) How do PASA patterns compare to floristic patterns obtained with a classification (UPGMA) and an ordination (NMS)? The main distinction of floristic categories was between communities of humid and dry climates, followed by a finer separation of communities congruent with topography; vegetation physiognomy corresponded with both. PASA, UPGMA, and NMS produced highly coincident floristic groups; however, affinities among groups were different. Advantages of PASA over UPGMA and NMS are that PASA produces groupings strictly based on the shared species and provides different measures of support for floristic groups. The three techniques indicated that the humid and dry limestone areas of Puerto Rico had floristically divergent dry‐type vegetation, even when they were structurally and physiognomically convergent. Also, floristic affinities of dry communities in Puerto Rico were stronger with dry communities on other islands than to more humid communities on the same island; thus, humidity regime is stronger than geography in promoting floristic links among limestone vegetation communities of die Caribbean. Almost every conclusion obtained from UPGMA and NMS was also taken from PASA, and so all diree techniques are compatible. The methodological, theoretical, and interpretive simplicity of PASA is what makes it an attractive procedure for studies that examine composition patterns.