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1.
Elez D. Vainer Juliane Kania-Almog Ghadeer Zatara Yishai Levin Gilad W. Vainer 《Molecular & cellular proteomics : MCP》2020,19(10):1619-1631
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- •TOP: robust, bio-friendly FFPE proteome extraction method with less fixation bias.
- •Proteome of MSI-H colorectal cancer identifies immunobiology key elements.
- •MSI-H tumor displays an “INFg-STAT1 centric signature”.
- •Long-term IFNg induction In-vitro mimicks MSI-H signature.
2.
《Molecular & cellular proteomics : MCP》2020,19(11):1826-1849
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- •Identification of subcellular protein interactomes via proximity labeling and quantitative multiplexed proteomics.
- •SEC61β and RPN1 interactomes overlap with translocon-associated protein networks.
- •SEC62 interacts with redox-linked proteins and ER luminal chaperones.
- •LRRC59 directly interacts with mRNA translation factors and SRP machinery on the ER.
3.
《Molecular & cellular proteomics : MCP》2020,19(7):1076-1087
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- •Organelle profiling maps capture localizations of 1000s of proteins in one experiment.
- •Comparing maps +/− perturbation reveals disease mechanisms & cellular responses.
- •A conceptual guide to planning and interpreting organellar profiling experiments.
- •A cross-study consensus set of human organellar marker proteins.
4.
Eduard Hofsetz Fatih Demir Karolina Szczepanowska Alexandra Kukat Jayachandran N. Kizhakkedathu Aleksandra Trifunovic Pitter F. Huesgen 《Molecular & cellular proteomics : MCP》2020,19(8):1330-1345
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- •Mitochondrial heart N terminome shows aminopeptidase processing after MTS cleavage.
- •CLPP-deficiency alters protein processing patterns in mouse heart mitochondria.
- •Candidate substrates identified by N termini accumulation and interaction with inactive ClpXP.
- •UQCRC1, HSPA9 and OAT validated biochemically as high confidence ClpXP substrates.
5.
《Molecular & cellular proteomics : MCP》2020,19(5):900-912
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- •Affinity-based proteomics of infected macrophage cells.
- •Salmonella-modified membranes exhibit host-specific composition.
- •Proteome differences explain some host-dependent pathophysiological differences.
6.
《Molecular & cellular proteomics : MCP》2020,19(4):690-700
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- •Two molecular groups in anal squamous carcinoma according proteomic profile.
- •Differences in possible targeted processes such as metabolism or immune response.
- •Different percentage of tumor lymphocyte infiltration.
- •Difference in the frequency of ATM variants, related to PPAR inhibitors.
7.
《Molecular & cellular proteomics : MCP》2020,19(7):1161-1178
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- •XL-MS reveals new PPIs in yeast mitochondria under glycerol and glucose condition.
- •Significant but limited results from quantitative XL-MS experiments.
- •Ndi1 participates in a CIII2CIV2 respiratory supercomplex.
- •Min8 promotes assembly of Cox12 into an intermediate complex IV.
8.
《Molecular & cellular proteomics : MCP》2020,19(11):1777-1789
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- •Quantitative mass spectrometric method to monitor PTM stability.
- •Pulse labeling reveals dehydroxylation of several asparagine hydroxylation sites.
- •Reversal of TNKS2, TRPV3 and HIF1a asparagine hydroxylation sites.
- •Protein dehydroxylation is an additional level of control for cellular signaling networks.
9.
《Molecular & cellular proteomics : MCP》2020,19(7):1193-1208
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- •cGAS acetylations and phosphorylations under basal and immune-stimulated states.
- •K384 and K414 acetylations and S305 phosphorylation inhibit cGAS-mediated apoptosis.
- •Acetylation at K198 stimulates cGAS-dependent interferon signaling.
- •K198 acetylation is decreased upon herpesvirus infection.
10.
《Molecular & cellular proteomics : MCP》2020,19(3):456-466
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- •Urinary proteomes of patients with recurrent UTI, renal scarring, and VUR.
- •80 proteins differentially expressed, compared to healthy controls.
- •62 proteins may be indicative of susceptibility for UTI.
- •Altered acute phase response, extracellular matrix and carbohydrate metabolism.
11.
《Molecular & cellular proteomics : MCP》2020,19(11):1910-1920
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- •PRMT5 glutathionylation is increased in aged mice or under oxidative stress.
- •Deglutathionylation of PRMT5 is catalyzed by glutaredoxin-1.
- •PRMT5 glutathionylation decreases its methyltransferase activity.
- •PRMT5 glutathionylation results in G2/M arrest and inhibits cell proliferation.
12.
《Molecular & cellular proteomics : MCP》2020,19(5):828-838
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- •Higher AGC significantly improves quantitation quality in single-cell analysis.
- •The boosting-to-sample ratio should be carefully evaluated and optimized.
- •iBASIL allows for precise quantitation of 1,500 proteins from 104 AML single cells.
- •iBASIL recapitulates major biological differences in different AML single cells.
13.
Tirsa L. E. van Westering Henrik J. Johansson Britt Hanson Anna M. L. Coenen-Stass Yulia Lomonosova Jun Tanihata Norio Motohashi Toshifumi Yokota Shin'ichi Takeda Janne Lehti Matthew J. A. Wood Samir EL Andaloussi Yoshitsugu Aoki Thomas C. Roberts 《Molecular & cellular proteomics : MCP》2020,19(12):2047-2068
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- •Proteomics analysis was performed in two murine models of Duchenne muscular dystrophy (mdx and mdx52) at three ages (8, 16 and 80 weeks) and compared with wild-type controls.
- •High-resolution isoelectric focusing liquid chromatography-tandem mass spectrometry enabled the quantification of 4974 proteins in all samples.
- •This study has revealed protein signatures of dystrophin deficiency and the progression of dystrophic pathology.
- •In contrast, the proteomes of the mdx and mdx52 mice were highly similar.
- •Pathway analysis revealed crosstalk between inflammatory, metabolic and muscle growth processes in dystrophic muscle.
14.
《Molecular & cellular proteomics : MCP》2020,19(7):1209-1219
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- •In depth performance assessment of leading tools for differential protein abundance.
- •Novel fast modular framework MSqRobSum for robust protein summarization and inference.
- •MsqRobSum outperforms leading protein summarization-based tools.
- •MSqRobSum is on par with top-performing peptide based tool MSqRob.
15.
《Molecular & cellular proteomics : MCP》2020,19(2):308-325
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- •Multi-omics analysis on mode of action of novel antimalarial, JPC-3210
- •JPC-3210 has rapid parasite killing kinetics.
- •Metabolomics and peptidomics demonstrated JPC-3210 inhibits hemoglobin digestion.
- •Proteomics demonstrated JPC-3210 enriches for translation regulation proteins.
16.
《Molecular & cellular proteomics : MCP》2020,19(11):1805-1825
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- •Ectopic ATP synthase as a therapeutic target for gefitinib-resistant NSCLC.
- •Multiomics uncovers the dynamic network in response to ecto-ATP synthase blockade.
- •Ecto-ATP synthase blockade induces cytotoxicity by CK2/phospho-topo IIα/GAS5 axis.
- •A positive feedforward circuit between phospho-topo IIα and lncRNA-GAS5.
17.
Khyatiben V. Pathak Marissa I. McGilvrey Charles K. Hu Krystine Garcia-Mansfield Karen Lewandoski Zahra Eftekhari Yate-Ching Yuan Frederic Zenhausern Emmanuel Menashi Patrick Pirrotte 《Molecular & cellular proteomics : MCP》2020,19(10):1688-1705
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- •ETA present a diverse proteome and metabolome and can be employed for longitudinal studies of nosocomial infections affecting the lungs.
- •The proteome and metabolome of ETA and BAL share comparable features that may be leveraged for diagnostics.
- •ETA carries early signatures of host innate immunity against ventilator-associated pneumonia.
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19.
《Molecular & cellular proteomics : MCP》2020,19(4):730-743
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- •Detection of low-abundance phosphotyrosine-containing peptides is challenging.
- •Multiplexed TMT allows inclusion of modification(pTyr)-saturated boost channels.
- •Boost channels facilitate selection of pTyr precursor ions for fragmentation.
- •Quantitation depth is increased while maintaining accuracy and precision.
20.
《Molecular & cellular proteomics : MCP》2020,19(2):405-420
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- •Analysis of product ions produced by 213 nm UVPD is used to refine database search.
- •A product ion at the N-terminus of Pro, y-2, is observed in 213 nm UVPD spectra.
- •213 nm UVPD provides more complete proteoform characterization than HCD.
- •HCD and 213 nm UVPD are complementary fragmentation methods for proteoforms <30 kDa.