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1.
《Molecular & cellular proteomics : MCP》2020,19(4):589-607
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- •P. aeruginosa grown with exosiderophores and analyzed by proteomic and RT-qPCR.
- •Catechol-type exosiderophores strongly induce the expression of their transporters.
- •Repression of the endogenous iron uptake pathways.
- •Complex phenotypic plasticity in the expression of the various iron-uptake pathways.
2.
Prashali Bansal Johannes Madlung Kristina Schaaf Boris Macek Fulvia Bono 《Molecular & cellular proteomics : MCP》2020,19(9):1485-1502
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- •Label-free and dimethyl labeling MS analysis of 6 RBPs from Drosophila ovaries.
- •Functionally related RBPs show overlapping proteomes.
- •Selective co-purification of splicing factors and translational regulators.
- •Validation of 26 novel interactions by co-immunoprecipitation.
3.
《Molecular & cellular proteomics : MCP》2020,19(4):690-700
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- •Two molecular groups in anal squamous carcinoma according proteomic profile.
- •Differences in possible targeted processes such as metabolism or immune response.
- •Different percentage of tumor lymphocyte infiltration.
- •Difference in the frequency of ATM variants, related to PPAR inhibitors.
4.
《Molecular & cellular proteomics : MCP》2020,19(5):900-912
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- •Affinity-based proteomics of infected macrophage cells.
- •Salmonella-modified membranes exhibit host-specific composition.
- •Proteome differences explain some host-dependent pathophysiological differences.
5.
Felicia Grasso Stefania Mochi Federica Fratini Anna Olivieri Chiara Curr Inga Siden Kiamos Elena Deligianni Cecilia Birago Leonardo Picci Elisabetta Pizzi Tomasino Pace Marta Ponzi 《Molecular & cellular proteomics : MCP》2020,19(12):1986-1997
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- •Quantitative analysis of Plasmodium sexual stage egress secretome.
- •Activated gametocytes release gender-related proteins.
- •Gametocyte egress process involves different types of vesicles.
6.
《Molecular & cellular proteomics : MCP》2020,19(3):501-517
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- •Urinary peptide profiling of youths with type 1 diabetes before clinical injury.
- •Internal validation of uromodulin peptides by parallel reaction monitoring.
- •Discovery of novel bioactivity of uromodulin peptides in vitro.
- •In silico prediction of proteases involved in uromodulin processing.
7.
Barbara Steigenberger Henk W.P. van den Toorn Emiel Bijl Jean-Franois Greisch Oliver Rther Markus Lubeck Roland J. Pieters Albert J.R. Heck Richard A. Scheltema 《Molecular & cellular proteomics : MCP》2020,19(10):1677-1687
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- •Cross-linked peptides are physically separated from mono-linked peptides in the gas-phase by TIMS ion mobility.
- •Development of a novel data acquisition routine that a-priori distinguishes cross-linked from mono-linked peptides called caps-PASEF.
- •First application of PhoX-driven cross-linking mass spectrometry on the timsTOF Pro.
- •Application of cross-linking mass spectrometry to medium to high complexity samples.
8.
《Molecular & cellular proteomics : MCP》2020,19(6):1005-1016
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- •Brain membrane protein extraction.
- •Protein prenylation.
- •Prenyl peptide capture and characterization by LC-MS/MS.
- •HCD and EThcD peptide fragmentation.
9.
Diana Samodova Christopher M. Hosfield Christian N. Cramer Maria V. Giuli Enrico Cappellini Giulia Franciosa Michael M. Rosenblatt Christian D. Kelstrup Jesper V. Olsen 《Molecular & cellular proteomics : MCP》2020,19(12):2139-2157
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- •ProAlanase is a powerful protease for efficient low pH disulfide bond mapping.
- •High suitability for analysis of histone family members and their PTMs.
- •Accurate phosphorylation profiling in proline-rich proteins.
- •Sequence coverage increase and full de novo sequencing in combination with trypsin.
10.
A Quantitative Tri-fluorescent Yeast Two-hybrid System: From Flow Cytometry to In cellula Affinities
《Molecular & cellular proteomics : MCP》2020,19(4):701-715
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- •Simultaneous quantification of Bait, Prey and Reporter at the single cell level.
- •Two hours of reaction are enough instead of 24–48 h for conventional assays.
- •Potential expression problems of the Bait and Prey can be easily detected.
- •True positive PPIs feature a distinct pattern of Reporter level versus Bait/Prey level.
- •PPIs with unknown affinities can be ranked using an affinity ladder.
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12.
Anatte Margalit James C. Carolan David Sheehan Kevin Kavanagh 《Molecular & cellular proteomics : MCP》2020,19(8):1346-1359
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- •Pseudomonas aeruginosa growth increases in Aspergillus fumigatus culture filtrates.
- •A. fumigatus culture filtrates are characterized by a range of peptidases and proteases.
- •LFQ proteomics characterizes the response of P. aeruginosa to A. fumigatus culture filtrates.
- •A. fumigatus creates an environment for P. aeruginosa to proliferate.
13.
Jana Zecha Chien-Yun Lee Florian P. Bayer Chen Meng Vincent Grass Johannes Zerweck Karsten Schnatbaum Thomas Michler Andreas Pichlmair Christina Ludwig Bernhard Kuster 《Molecular & cellular proteomics : MCP》2020,19(9):1503-1522
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- •In-depth proteomes of 4 SARS-CoV-2 cell line models (Vero E6, Calu-3, Caco-2, A549).
- •Proteomic evidence for thousands of Chlorocebus sabaeus proteins.
- •Proteomic response of Vero E6 cells to SARS-CoV-2 infection.
- •Synthetic peptides, spectral libraries, and targeted assays for SARS-CoV-2 proteins.
14.
《Molecular & cellular proteomics : MCP》2020,19(6):971-993
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- •db/db β-cells restores appropriate insulin stores and normalize secretory function.
- •Numerous changes in the phosphorylation and sialylation states by euglycemic rest.
- •Restoration of numerous dysfunctional biological processes following euglycemic rest.
- •β-cell adaptive flexibility may lead to improvement in endogenous β-cell function.
15.
Deborah Chang William E. Hackett Lei Zhong Xiu-Feng Wan Joseph Zaia 《Molecular & cellular proteomics : MCP》2020,19(9):1533-1545
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- •Changes in N-linked glycosylation in influenza A virus affect antigenicity of the virus.
- •Glycosylation similarity can be quantified, even in heterogeneously glycosylated proteins.
- •Glycosylation is measurably and site-specifically distinct in influenza from related strains.
16.
《Molecular & cellular proteomics : MCP》2020,19(3):529-539
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- •N-glycosylation site analysis of the hemipteran pest insect Nilaparvata lugens.
- •Differential N-glycosylation of proteins is observed between male and female adults.
- •Sex-specific glycoproteins are involved in insect reproduction.
17.
Steven T. Bruckbauer Benjamin B. Minkoff Deyang Yu Vincent L. Cryns Michael M. Cox Michael R. Sussman 《Molecular & cellular proteomics : MCP》2020,19(8):1375-1395
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- •Quantifying ionizing radiation-induced oxidation in E. coli and D. radiodurans.
- •Amelioration of protein damage dependent upon cellular components.
- •GAPDH active site is highly modified and also IR-modified in H. sapiens.
18.
Lok Man Ashleigh L. Dale William P. Klare Joel A. Cain Zeynep Sumer-Bayraktar Paula Niewold Nestor Solis Stuart J. Cordwell 《Molecular & cellular proteomics : MCP》2020,19(8):1263-1280
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- •Growth in the bile salt deoxycholate (DOC) induces virulence proteins in C. jejuni.
- •A putative symporter Cj0025c is associated with DOC growth and cystine transport.
- •Deletion of cj0025c results in loss of cystine transport and a sulfur starved proteotype.
- •Cj0025c is required for wild-type virulence phenotypes including human cell invasion.
19.
Nataly Mancette Rijensky Netta R. Blondheim Shraga Eilon Barnea Nir Peled Eli Rosenbaum Aron Popovtzer Solomon M. Stemmer Alejandro Livoff Mark Shlapobersky Neta Moskovits Dafna Perry Eitan Rubin Itzhak Haviv Arie Admon 《Molecular & cellular proteomics : MCP》2020,19(8):1360-1374
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- •Sufficient tumor tissues are often unavailable large HLA peptidome discovery.
- •Using patient derived xenograft (PDX) tumors can overcome this limitation.
- •The large PDX HLA peptidomes expand significantly those of the original biopsies.
- •The HLA peptidomes of the PDX tumors included many tumor antigens.
20.
《Molecular & cellular proteomics : MCP》2020,19(11):1767-1776
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- •N-glycan patterns are distinct in pediatric and adult urine.
- •Sex differences of N-glycans are much larger in adults.
- •Pediatric urine has almost no sex differences in N-glycan levels.
- •In adults, the majority of N-glycans were more abundant in males.