Stable isotope proxies for evaluating biodiversity in stream biota

Differences in δ¹³C and δ¹⁵N values in stream biota are caused by several environmental conditions. Variations in abundance, species richness and the assemblage structure of stream biota are also caused by several environmental conditions. Hence, abundance, species richness and the assemblage structure of stream biota are expected to be strongly correlated with the differences in value of stable isotopes. In this study, the gaps in δ¹³C and δ¹⁵N between periphyton and charr are discussed in terms of the abundance, genus richness, and assemblage of benthic invertebrates at each site. Gaps in δ¹³C between periphyton and charr were strongly correlated with some aspects of mountainous area and the genus richness of benthic invertebrates at each site. The gaps in δ¹⁵N between periphyton and charr were strongly correlated with the abundance and assemblage structure of benthic invertebrates at the location tested. The δ¹³C values of predators were correlated with some aspects of mountainous area and the assemblage structure of the benthic invertebrates. The δ¹⁵N values of predators were correlated with genus richness and the assemblage structure of the benthic invertebrates. These results suggest that the value gaps in δ¹³C and δ¹⁵N can be used to assess biodiversity and could provide indices for estimating the biodiversity in a stream.     

Role of phosphorus and nitrogen in photosynthetic and whole plant carbon gain and nutrient use efficiency in eastern white pine

Summary In white pine (Pinus strobus) seedlings grown in five forest soils from New York State, net photosynthetic capacity (Amax) plant^-1 was correlated with total foliar N plant^-1 (r ²=0.57), but was more highly correlated with total foliar P plant^-1 (r ²=0.82). There was no relationship (r ²<0.01) between Amax [g leaf]^-1 and foliar N [g leaf]^-1 for the pooled data set, but there was a significant (P<0.001), but weak (r ²=0.20) positive relationship between Amax [g leaf]^-1 and foliar P [g leaf]^-1 across all soils. However, within two of the five soils leaf N concentration was a significant (P<0.05) determinant of photosynthetic capacity. Due to differences in soil nutrient availabilities a large range in foliar P:N ratio (0.02–0.15) was observed, and the proportion of leaf P:N appeared to control Amax [g leaf N]^-1. Whole plant nitrogen (NUE) and phosphorus (PUE) use efficiencies were well correlated with whole plant P:N ratio. In addition, NUE was well correlated with Amax [g leaf N]^-1 and PUE was well correlated with Amax [g leaf P]^-1. However, NUE was not well correlated with PUE, and Amax [g leaf N]^-1 was not well correlated with Amax [g leaf P]^-1. These results indicated that P and/or N limitations were important components of photosynthetic nutrient relations in white pine grown in these five soils and suggest that both P and N and their proportions should be considered in analyses of photosynthesis-nutrient relations.     

Testing the ecophysiological basis for the control of monoterpene concentrations along canopy profiles in thinned and unthinned balsam fir stands

To determine which ecophysiological factors appear to control monoterpene concentrations in balsam fir foliage [Abies balsamea (L.) P. Mill.], the percentage of photosynthetically active radiation (%PAR), specific leaf area (SLA), light-saturated photosynthesis (A _max), and concentrations per unit leaf area of foliar nitrogen (N), total soluble sugars (TSS), starch and monoterpenes were measured on current-year needles from three canopy levels (upper, middle and lower) the year following a pre-commercial thinning. The thinning only modestly changed the light profile within the canopy. %PAR was negatively correlated with SLA (r ²=0.62 in June, r ²=0.53 in July and August) and positively correlated with foliar nitrogen concentrations (r ²=0.51) within the crown profile. The positive relationship between N and A _max was quite weak (r ²=0.15), suggesting significant variations in non-photosynthetic N within the canopies. Total monoterpenes were positively correlated with both %PAR (r ²=0.29) and A _max (r ²=0.27), and negatively correlated with SLA (r ²=0.30). Contrary to that predicted by the carbon-nutrient balance hypothesis, total monoterpenes were negatively and only very weakly correlated with the starch/N ratio (r ²=0.06) and were not significantly correlated with either the TSS/N or the [TSS+starch]/N ratios. Monoterpenes were positively correlated with both N and TSS, although the relationship varied with the phenological state of the foliage, i.e., monoterpenes were more highly correlated with TSS (r ²=0.67) (immature foliage) in June, and in July and August with N (r ²=0.63) (mature foliage). Thus, it appears that monoterpene concentrations may be controlled primarily by carbohydrate supply in the early growing season and later by enzymatic capacity. Data expressed on a dry weight basis showed a similar pattern. Received: 29 July 1999 / Accepted: 2 March 2000     

The effects of sand stabilization and revegetation on cryptogam species diversity and soil fertility in the Tengger Desert, Northern China

Cryptogamic crusts have long been regarded as important components of desert ecosystems. In order to reduce and combat the hazards of sandstorm and desertification, it is critical to conserve cryptogamic crusts in arid desert and semiarid regions. In this study, we characterized soil physical and chemical properties after revegetation on sanddunes stabilized with straw checkerboard. Revegetation accelerated the improvement of environmental conditions leading to the establishment and propagation of cryptogams on sanddunes in the Tengger desert region. Since revegetation began 44 years ago, 24 species of algae and 5 species of moss have established on fixed sanddunes in the Shapotou region in the northwest of China, but no lichens have been observed. Algal cover and species richness were found to be positively correlated with soil pH, contents of silt and clay, concentrations of HCO₃ ^–, Cl^–, SO₄ ^2-, Mg²⁺, soil organic carbon and N contents (p < 0.01), but were only weakly correlated with concentration of Ca²⁺, electrical conductivity (EC) and potassium content (K₂O). The number of species and cover of mosses were positively correlated with soluble K⁺ and Na⁺ but no other relationships were apparent. The percent sand in composition of soil particle sizes, and soil bulk density were both negatively correlated to species number and cover for both cryptogam organisms. This study represents a successful example of restoration of cryptogam species diversity in arid desert regions.     

Prediction of nitrogen availability and rice yield in lowland soils: Nitrogen mineralization parameters

Field experiments were conducted under flooded soil conditions using Maahas clay amended with urea and rice straw-sesbania mixtures during the wet and dry seasons. Parallel laboratory incubation tests were done. The objectives were 1) to determine N mineralization patterns and establish the relationship between mineralization parameters and either N availability or grain yield, and 2) to correlate the results of organic N mineralization studies in the laboratory with data from field experiments. The N mineralization patterns of flooded soils in the laboratory followed a logistic function. In laboratory studies, mineralization potential was positively correlated with extractable soil NH₄ ⁺-N at the end of the incubation period (cumulative available N). Likewise, mineralization potential calculated from laboratory studies was positively correlated with N uptake and grain yield from field studies. Extractable (NH₄ ⁺+NO₃ ^–)-N in the field correlated positively with extractable NH₄ ⁺-N in the laboratory. The extractable NH₄ ⁺-N from laboratory incubations at 14 days after transplanting, panicle initiation, and maturity was also highly and positively correlated with grain yield from field experiments.     

Bicarbonate/chloride transport kinetics at 37°C and its relationship to membrane lipids in mammalian erythrocytes

The rate of exchange of HCO₃^? with Cl^? at 37°C in erythrocytes of ten mammalian species was studied. The rate constant increases from 7s^?1 (ox) to 16s^?1 (rat), and is inversely proportional to the body size (log₁₀) of the species. It is found that the membrane permeability in different species is positively correlated to the red cell membrane phosphatidylcholine or arachidonate content, and is negatively correlated to the sphingomyelin or linoleate content.     

Expression analysis of Foxp3 in T cells from bovine leukemia virus infected cattle

In the present study, we monitored Foxp3⁺ T cells in bovine leukemia virus (BLV)‐infected cattle. By flow cytometric analysis, the proportion of Foxp3⁺CD4⁺ cells from persistent lymphocytotic cattle was significantly increased compared to control and AL cattle. Interestingly, the proportion of Foxp3⁺CD4⁺ cells correlated positively with the increased number of lymphocytes, virus titer and virus load, whereas it inversely correlated with IFN‐γ mRNA expression, suggesting that Foxp3⁺CD4⁺ T cells in cattle have a potentially immunosuppressive function. Further studies are necessary to elucidate the detailed mechanism behind the increased Treg during BLV infection.     

Effects of limestone and gypsum application to a Malaysian ultisol on soil solution composition and yields of maize and groundnut

A field experiment was conducted on an Ultisol in Malaysia to assess changes in soil solution composition and their effects on maize and groundnut yields, resulting from limestone and gypsum application. The results showed that soil solution Ca in the lime treatment remained mainly in the zone of incorporation, but in the gypsum treatment some Ca moved into 15–30 cm zone. Al³⁺ and AlSO₄ ⁺ were dominant Al species in the soil solution of nil treatment. Liming decreased Al³⁺ and AlSO₄ ⁺, but increased hydroxy-Al monomer activities. However, gypsum application resulted in an increase of AlSO₄ ⁺ activity and in a decrease of Al³⁺ activity. Relative maize and groundnut yields were negatively correlated with Al³⁺, Al(OH)²⁺ and Al_sum activities. Likewise, relative yields were negatively correlated with Al concentration and the Al concentration ratio and positively correlated with soil solution Mg concentration and Ca/Al ratio.     

南亚热带格木和红椎凋落叶及细根分解特征

采用原位分解法对南亚热带格木(Erythrophleum fordii)和红椎(Castanopsis hystrix)人工纯林的凋落叶和细根分解动态及凋落叶和细根分解速率之间的相关关系进行了比较研究。结果显示,格木、红椎人工林凋落叶和细根分解系数分别为0.98a~(-1)、0.88a~(-1)和0.65a~(-1)、0.59a~(-1)。格木、红椎凋落物分解主要受凋落物自身化学性质的影响,而与林分内环境条件的关系不显著。分解初期,凋落叶和细根的质量损失均与氮含量显著正相关(R~2分别为0.525和0.549),与C/N比显著负相关(R~2分别为0.764和0.361);而分解后期,凋落叶和细根的质量损失均与氮含量显著正相关(R~2分别为0.565和0.511),与C/N比、木质素含量、木质素/N比显著负相关(R~2分别为0.482和0.574;0.525和0.519;0.523和0.486)。格木、红椎凋落叶分解速率和细根分解速率表现出明显的正相关性,这主要归因于凋落叶、细根基质质量对凋落叶分解速率和细根分解速率的影响具有明显的相似性。     

Variation in carbon and nitrogen isotopic ratios of fin and muscle tissues of Longnose Gar (Lepisosteus osseus) and Smallmouth Buffalo (Ictiobus bubalus)

Fin clips have been proposed as a non-lethal and non-invasive alternative to dorsal muscle samples in stable isotope analysis. However, potential differences in elemental composition and turnover rates can bias inferences when different tissues are combined. Here, we tested the average difference and correlation of the isotopic signature of δ¹³C and δ¹⁵N between muscle and fin samples in two arge-bodied fishes: Longnose Gar (Lepisosteus osseus) and Smallmouth Buffalo (Ictiobus bubalus). We found that δ¹⁵N signatures of muscle and fin tissues were strongly and positively correlated for both species, although the muscle tissue for Smallmouth Buffalo was slightly more enriched in δ15N. δ¹³C signatures of both tissues were significatively different and not strongly correlated for Longnose Gar, but similar and strongly correlated for Smallmouth Buffalo. Our results suggest that fin and muscle tissue can be combined for analyses of δ¹⁵N, but correction for higher enrichment of muscle tissue may be necessary for Smallmouth Buffalo. Conversely, combining fin and muscle tissue for analysis of δ¹³C requires more caution due to their weaker correlation and dependence of species identity.     

西北油松叶片δ13C特征与环境因子和叶片矿质元素的关系

选取甘肃、宁夏及内蒙古油松(Pinus tabulaeformis)10个天然种群, 通过测定油松叶片稳定碳同位素组成(δ¹³C)和元素含量等特征, 分析了油松叶片δ¹³C特征及其与环境气候因子和叶片矿质元素含量之间的关系。研究结果表明, 油松叶片δ¹³C的变化范围在-28.68‰ - -25.02‰之间, 平均值为-26.82‰; 油松叶片δ¹³C值与海拔、经度之间相关性不显著, 与纬度之间呈显著正相关, 与年降水量、年平均温度之间均呈显著负相关, 说明年平均温度和年降水量是决定油松¹³C分馏能力差别及生长的主要限制因子; 叶片元素N、P、K、Si、Ca、Fe含量与δ¹³C值有明显的相关性, 其中叶片N、P、K含量与δ¹³C值显著负相关, Si、Ca、Fe含量与δ¹³C值显著正相关, 可见不同种群间δ¹³C组成差异可反映植物营养元素含量的变化状况。不同生境条件下环境气候因子和矿质元素含量的这种响应模式在一定程度上反映和影响了以油松为建群种和优势种的生态系统的δ¹³C变化特性。     

Intratumoral CD8+ T/FOXP3+ cell ratio is a predictive marker for survival in patients with colorectal cancer

The human immune system consists of a balance between immune surveillance against non-self antigens and tolerance of self-antigens. CD8⁺ T cells and CD4⁺ regulatory T cells (Tregs) are the main players for immune surveillance and tolerance, respectively. We examined immunohistochemically the immunological balance at the tumor site using 94 surgically resected colorectal cancer tissues. Forkhead box P3 (FOXP3)⁺ cells were considered to be Tregs in the present study. The number of intratumoral FOXP3⁺ cells (itFOXP3⁺ cells) was positively correlated with lymph node metastases (P = 0.030). itCD8⁺ T/itFOXP3⁺ cell ratio negatively correlated with pathological stages (P = 0.048). Next, relationship between the number of itCD8⁺ T cells or itFOXP3⁺ cells and survival prognosis in 94 patients who underwent a curative resection was analyzed. Only itCD8⁺ T/itFOXP3⁺ cell ratio positively correlated with disease-free survival (0.023) and overall survival (P = 0.010). Multivariate analysis indicated that itCD8⁺ T/itFOXP3⁺ cell ratio is an independent prognostic factor (P = 0.035) of overall survival. The number of itFOXP3⁺ cells positively correlated with transforming growth factor-beta TGF-β production at the tumor site (P = 0.020). In conclusion, itCD8⁺ T/itFOXP3⁺ cell ratio is a predictive marker for both disease-free survival time and overall survival time in patients with colorectal cancer. Importantly, itCD8⁺ T/itFOXP3⁺ cell ratio may be an independent prognostic factor. And, tumor-producing TGF-β may contribute to the increased number of itFOXP3⁺ cells.     

Properties of potassium uptake by seedling roots of grape cultivars

Uptake rates of (⁸⁶Rb)K⁺ by seedling roots of six cultivars were measured and compared with K⁺ content of the root, K⁺ leakage, H⁺ efflux, and K⁺-ATPase activity of a partially purified plasmalemma fraction.Different cultivars showed significantly different rates of (⁸⁶Rb)K⁺ uptake. The uptake rates of the first (0–5 min) period did not correlate with K⁺ content of the seedling roots.The rates of uptake in the 10 to 30 min period, supposed to be active, were negatively correlated with K⁺ content of the root. Roots consistently leaked K⁺ during the first 5 min. This leakage was positively correlated with the endogenous K⁺ content of the tissue.H⁺ efflux was significantly different among the cultivars and correlated with the K⁺-ATPase activity of a microsomal fraction partially purified on discontinuous (18/34%) sucrose gradient. The relationships among transport parameters are discussed.Part of the present research was carried out at the Department of Agricultural Biotechnology of University of Padova, Italy.Part of the present research was carried out at the Department of Agricultural Biotechnology of University of Padova, Italy.     

A historical biogeographical protocol for studying biotic diversification by taxon pulses

Aim To present a historical biogeographical protocol for distinguishing biotic diversification by taxon pulse radiations from biotic diversification by vicariance. Location Mexico and northern Central America. Methods Brooks Parsimony Analysis (BPA), phylogenetic inference, linear correlation analysis. Results The taxon pulse radiation of 33 clades in nine areas of endemism in Mesoamerica is based on nine episodes of biotic expansion from three areas, and six episodes of vicariance, involving four geographical splits. Nineteen per cent of speciation events are due to vicariance, 25% to peripheral isolates speciation and 56% are within‐area events. The species–area curve has a correlation coefficient (r²) of 0.47. Extinction events and species richness are highly correlated (r² = 0.75), but colonization events and species richness are poorly correlated (r² = 0.36), suggesting that colonization is not the main determinant of the species–area relationship. Colonization events are more poorly correlated with size of area (r² = 0.05) than are in situ speciation events (r² = 0.60). Colonization events and in situ events are poorly correlated (r² = 0.02). All areas of endemism have reticulated histories, and have acted as both sources and islands at various times. Main conclusions Taxon pulses can be distinguished from maximum vicariance using this protocol; refining it requires a method for generating area cladograms from complex data and incorporation of direct dating of evolutionary events.     

Phenological studies of selected leaf and plant traits of Didymochlaena truncatula (Dryopteridaceae) in a Brazilian submontane tropical rainforest

The phenology of the herbaceous fern Didymochlaena truncatula in a Brazilian submontane tropical rainforest is described. A total of 23 individuals were observed over 18 months (May 2012 to October 2013). The number of live leaves, leaf production, leaf mortality, leaf growth, and fertility were recorded monthly and correlated with local rainfall and temperature. The D. truncatula plants remained evergreen with a monthly mean of 6.49 ± 0.75 leaves that were produced almost continuously at a rate of 6.13 ± 1.46 leaves plant^?1 year^?1. This rate was higher than the leaf mortality rate, which was 4.61 ± 1.27 leaves plant^?1 year^?1. Monthly leaf growth of the population was correlated with rainfall. Leaf expansion was fastest in the first month after emergence (1.31 ± 1.03 cm day^?1). Fertility and leaf production intensity were not correlated with climate factors or seasonal variations. However, leaf mortality was negatively correlated with rainfall, causing variations in the number of leaves throughout the year. These results show that the phenological rhythms of D. truncatula were not equally influenced by climate variations. The phenology of D. truncatula corresponds to the phenology of a small number of aseasonal tropical ferns.     

A Ribokinase Family Conserved Monovalent Cation Binding Site Enhances the MgATP-induced Inhibition in E.?coli Phosphofructokinase-2

The enzymatic activity of secreted phosphatidylinositol-specific phospholipase C (PI-PLC) enzymes is associated with bacterial virulence. Although the PI-PLC active site has no obvious lid, molecular-dynamics simulations suggest that correlated loop motions may limit access to the active site, and two Pro residues, Pro²⁴⁵ and Pro²⁵⁴, are associated with these correlated motions. Whereas the region containing both Pro residues is quite variable among PI-PLCs, it shows high conservation in virulence-associated, secreted PI-PLCs that bind to the surface of cells. These regions of the protein are also associated with phosphatidylcholine binding, which enhances PI-PLC activity. In silico mutagenesis of Pro²⁴⁵ disrupts correlated motions between the two halves of Bacillus thuringiensis PI-PLC, and Pro²⁴⁵ variants show significantly reduced enzymatic activity in all assay systems. PC still enhanced activity, but not to the level of wild-type enzyme. Mutagenesis of Pro²⁵⁴ appears to stiffen the PI-PLC structure, but experimental mutations had minor effects on activity and membrane binding. With the exception of P245Y, reduced activity was not associated with reduced membrane affinity. This combination of simulations and experiments suggests that correlated motions between the two halves of PI-PLC may be more important for enzymatic activity than for vesicle binding.     

Generating Correlated Binary Variables with Complete Specification of the Joint Distribution

Most statistical methods for the analysis of correlated binary data are based on asymptotic theory. Therefore it is important to generate correlated binary data efficiently for Monte Carlo simulation studies to investigate the finite sample performance of these methods. This article provides a simple method for generating correlated binary data with a given joint distribution. The key idea is to consider k‐variate binary data as a multinomial distribution with 2^k possible outcomes.     

北京市五大水系水体浮游细菌的数量特征研究

为掌握水域浮游细菌数量分布特征及其变化情况,采用荧光显微镜细菌计数法（AODC）于2016年6月至2018年9月研究了北京市五大水系浮游细菌的数量特征。结果表明,各水系浮游细菌密度分别为潮白河水系（0.24～28.46）×104 cell/mL,大清河水系（1.34～64.00）×10⁴ cell/mL,永定河水系（0.17～6.77）×10⁴ cell/mL,北运河水系（0.24～64.00）×10⁴ cell/mL,蓟运河水系（0.80～112.00）×10⁴ cell/mL。SPSS相关分析表明,各水系浮游细菌密度与水体理化因子间的相关性存在明显差异,大清河水系细菌密度与TN（P<0.05）呈显著正相关,与TP（P<0.01）和ADP(P<0.01)呈极显著正相关;永定河水系细菌密度与TAN（P<0.05）和TP(P<0.05)呈显著正相关,与ADP（P<0.01）呈极显著正相关;蓟运河水系细菌密度与Chl-a（P<0.05）呈显著正相关;潮白河水系及北运河水系细菌密度则与各理化因子均无显著相关性。从浮游细菌数量来看,各水系水质均较好,其中永定河水系水质最优。     

The circadecadal rhythm of oscillation of umbilical cord blood parameters correlates with geomagnetic activity – An analysis of long-term measurements (1999–2011)

Recently, we have shown that the contents of total nucleated cells (TNCs) and CD34⁺ hematopoietic stem and progenitor cells (CD34⁺ HSPCs) as well as the cord blood volume (CBV) in umbilical cord blood (UCB) show a circadecadal (~10 years) rhythm of oscillation. This observation was based on an analysis of 17,936 cord blood donations collected during 1999–2011. The aim of the present study was to investigate whether this circadecadal rhythm of oscillation in TNCs, CD34⁺ HSPCs and CBV is related to geomagnetic activity. For the analysis, the yearly averages of TNCs, CD34⁺ HSPCs and CBV in UCB were correlated with geomagnetic activity (Dcx index). Our analysis revealed that (i) all three UCB parameters were statistically significantly correlated with the level of geomagnetic activity, (ii) CBV showed a linear correlation with the Dcx index (r = 0.5290), (iii) the number of TNCs and CD34⁺ HSPCs were quadratic inversely correlated with the Dcx index (r = ?0.5343 and r = ?0.7749, respectively). Furthermore, (iv) CBV and the number of TNCs were not statistically significantly correlated with the number of either modest or intense geomagnetic storms per year, but (v) the number of CD34⁺ HSPCs was statistically significantly correlated with the number of modest (r = 0.9253) as well as intense (r = 0.8683) geomagnetic storms per year. In conclusion, our study suggests that UCB parameters correlate with the state of the geomagnetic field (GMF) modulated by solar activity. Possible biophysical mechanisms underlying this observation, as well as the outcome of these findings, are discussed.     

Growth response of Egyptian children with idiopathic short stature during four years of growth hormone therapy

BACKGROUND:

Multiple factors affect the growth response to recombinant human growth hormone (rhGH) in children with idiopathic short stature (ISS).

AIM:

To evaluate the growth responses of children with ISS treated with rhGH, aiming to identify the predictors of growth response.

MATERIALS AND METHODS:

We studied 120 cases, 90 males (75%), with a mean age of 13.8±2.7 years and 30 females (25%), with a mean age of 12.3±2.5 years. All patients received rhGH with a standard dose of 20 IU/m²/week. The calculated dose per week was divided into six days and given subcutaneous at night.

RESULTS:

A significant positive trend was detected in the delta changes of all anthropometric data. For the first year, the growth response was positively correlated to CA and BA delay and negatively correlated to height, weight and IGF-1 SDSs. For the second year, the growth response was correlated positively to first year growth velocity, BA, triceps skin fold thickness SDS and deviation from target height, and negatively correlated to weight, IGFBP3 SDS and target height SDS. For the third year, the growth response was positively correlated to five variables namely target height, 2^nd year growth velocity, IGF-1 SDS, weight SDS and triceps skin fold thickness SDS. For the fourth year, growth response was positively correlated to 2^nd and 3^rd year growth velocity, BA, deviation from target height and weight/ height SDS.

CONCLUSION:

Our study showed multiplicity of predictors that is responsible for response in ISS children treated with rhGH, and BA was an important predictor.