Carnivore mammals in a fragmented landscape in northeast of São Paulo State,Brazil

São Paulo is the most developed state in Brazil and little of its native vegetation remains. In Luiz Antonio and Santa Rita do Passa Quatro municipalities, only small fragments of cerrado (Brazilian savanna) physiognomies (cerradão, cerrado sensu stricto) and of semideciduous forest have been left, surrounded by eucalyptus silviculture and sugar-cane agriculture. However, that vegetation mosaic still shelters large mammals, including several carnivore species. To detect the carnivores present in such a mosaic area (50,000 ha), and to find out how they use the landscape, we recorded them through 21 camera traps and 21 track plots, during 18 months. Species richness, diversity and relative frequency were evaluated according to the habitat. Ten species were recorded, some of them locally threatened to extinction (Puma concolor, Leopardus pardalis, Chrysocyon brachyurus). Species diversity did not significantly differ among fragments, and although most species preferred one or another habitat, the carnivore community as a whole explored all the study area regardless of the vegetation cover; eucalyptus plantations were as used by the carnivores as the native fragments. Therefore, it seems possible to maintain such animals in agricultural landscapes, where some large native fragments are left and the matrix is permeable to native fauna.     

Fire affects the occurrence of small mammals at distinct spatial scales in a neotropical savanna

Fire is a major disturbance event that affects biomes worldwide, altering vegetation structure and flora and fauna assemblages. Here, we investigated the effects of an extensive wildfire (~?6240 ha) on small mammal assemblages in savanna woodland (cerradão) at two spatial scales (meso- and macrohabitat) in a neotropical savanna (Brazilian Cerrado). At each spatial scale, we assessed relationships between habitat structure and small mammal species composition and abundance before and after the fire in four natural patches (one burned, three unburned) using partial redundancy analysis. From July 2009 to October 2013, we captured 1319 individuals belonging to 14 species. Our results showed that the fire had consequences for small mammal assemblage at both scales. After the fire, the burned patch differed from the other patches in vegetation attributes and species composition. At a fine scale, fire increased the herbaceous layer and decreased the litter layer and understory obstruction. On a larger scale, the main consequences of fire on vegetation structure were increased variation in litter depth, tree diameter, and distance to the nearest tree. We observed a relationship between mesohabitat structure and the abundance of species with different habitat requirements during the post-fire succession. Fire favored the invasion of generalist species from open Cerrado habitats (rodents Calomys tener, Calomys expulsus, Cerradomys scotti, and Necromys lasiurus) at the expense of more specialized forest species. Our results reinforce the relevance of incorporating multi-scale habitat heterogeneity in future studies assessing the effects of fire on wildlife.     

Biological functioning of Brazilian Cerrado soils under different vegetation types

Aims

Over a 2?year period, we compared the soil biological functioning (SBF) of Cerrado physiognomies ranging from grassland-savannic to forest formations, sampling in the middle of the dry and rainy seasons.

Methods

Soil samples were collected at two depths (0 to 5?cm and 5 to 20?cm) under the following physiognomies: Campo Sujo, Cerrado Ralo, Cerrado sensu stricto, Cerrad?o and Mata de Galeria. The SBF was represented by the simultaneous analyses of microbial biomass carbon, soil basal respiration and the activity of enzymes linked to the C, P and S cycles (β-glucosidase, acid phosphatase and arylsulfatase, respectively).

Results

The results demonstrated that Cerrado physiognomies are a major determinant of SBF patterns. The forest-like physiognomies (Mata de Galeria and Cerrad?o) presented the highest biomass and activity compared to the grassland (Campo Sujo) and savanna physiognomies (Cerrado Ralo and Cerrado sensu stricto). These differences were more evident in the topsoil layer (0 to 5?cm), and the seasonal effect on the SBF of the Mata de Galeria and Cerrad?o was more pronounced than on the other physiognomies.

Conclusions

These results provide a benchmark for evaluating changes in SBF and related processes in Cerrado areas due to shifts toward agriculture and cattle production.     

Index,Vol. 34, 1999

To investigate whether similar physiognomic areas support similar faunas, the richness, similarity, and community structure of the ant fauna attracted to baits in an area of the Brazilian Cerrado sensu stricto at the core of the domain and in two Cerrado 'islands' (one of sensu stricto and another of 'cerradão') were compared. In each locality, four collecting events were performed (two during the day and two at night) capturing ants attracted to 400 sardine baits (200 in soil, 200 in vegetation). Ants of six subfamilies, 33 genera, and 121 species were identified visiting baits in the three areas (180 species estimated). The most speciose genera were Camponotus (27 species), Pheidole (13), Solenopsis (11), and Crematogaster (8). The similarity values between pair sites can be considered medium in relation to other studies. The highest value was recorded for the core area and the 'island' of Cerrado sensu stricto (Morisita-Horn = 0.57). The two Cerrado 'islands' were found to be 0.44 similar and the core area and the 'cerradão' 0.41 similar. The ordination analysis (non-metric multidimensional scaling) revealed discontinuities in species distributions between areas of Cerrado sensu stricto and 'cerradão,' and distinctive ant faunas relative to the temporal (nocturnal and diurnal) and foraging niches (ground and vegetation). The ant fauna at ground level in the 'cerradão' and Cerrado sensu stricto showed the greatest dissimilarity. The data suggest that areas of Cerrado are characterized by relatively high local ant fauna richness, and that community structure is influenced by the distance between sites and the diversity of vegetation.     

A new species of <Emphasis Type="Italic">Vanilla</Emphasis> (Orchidaceae: Vanilloideae) from São Paulo,Brazil

A new orchid species, Vanilla paludosa, native to marshy forests close to cerrado vegetation in the state of São Paulo, Brazil, is described and illustrated. The relationship of V. paludosa to other species of the genus is discussed.     

Nutrient and water dynamics of Amazonian <Emphasis Type="Italic">canga</Emphasis> vegetation differ among physiognomies and from those of other neotropical ecosystems

Ferriferous savannas, also known as cangas in Brazil, are nutrient-impoverished ecosystems adapted to seasonal droughts. These ecosystems support distinctive vegetation physiognomies and high plant diversity, although little is known about how nutrient and water availability shape these ecosystems. Our study was carried out in the cangas from Carajás, eastern Amazonia, Brazil. To investigate the N cycling and drought adaptations of different canga physiognomies and compare the findings with those from other ecosystems, we analyzed nutrient concentrations and isotope ratios (δ¹³C and δ¹⁵N) of plants, litter, and soils from 36 plots distributed in three physiognomies: typical scrubland (SB), Vellozia scrubland (VL), and woodland (WD). Foliar δ¹⁵N values in cangas were higher than those in savannas but lower than those in tropical forests, indicating more conservative N cycles in Amazonian cangas than in forests. The lower δ¹⁵N in savanna formations may be due to a higher importance of mycorrhizal species in savanna vegetation than in canga vegetation. Elevated δ¹³C values indicate higher water shortage in canga ecosystems than in forests. Foliar and litter nutrient concentrations vary among canga physiognomies, indicating differences in nutrient dynamics. Lower nutrient availability, higher C:N ratios, and lower δ¹⁵N values characterize VL, whereas WD is delineated by lower δ¹³C values and higher soil P. These results suggest lower water restriction and lower P limitation in WD, whereas VL shows more conserved N cycles due to lower nutrient availability. Differences in nutrient and water dynamics among physiognomies indicate different ecological processes; thus, the conservation of all physiognomies is required to ensure the maintenance of functional diversity in this unique ecosystem.     

Banding and FISH in three species of <Emphasis Type="Italic">Vernonia</Emphasis>, subsection <Emphasis Type="Italic">Macrocephalae</Emphasis> (Asteraceae,Vernonieae)

To complement our knowledge about the karyotypes of the genus Vernonia Schreb., different techniques of chromosome banding, including AgNOR, triple staining with fluorochromes CMA/DA/DAPI (CDD), and fluorescence in situ hybridization (FISH) for the 45S rDNA probe, were applied to three species of subsection Macrocephalae. Vernonia bardanoides was collected from an area of cerrado (savanna) vegetation in Itirapina, São Paulo State, Brazil, and V. linearifolia and V. tomentella were collected from areas of rocky, open altitudinal vegetation in Joaquim Felicio and Diamantina, respectively, in Minas Gerais State. All species showed two terminal CMA⁺ and NOR bands. FISH indicated two terminal 45S rDNA sites in V. linearifolia and V. tomentella, and six in V. bardanoides.     

Entomopathogenic nematode distribution and edaphoclimatic conditions in the Cerrado of Minas Gerais,Brazil

Based on the high diversity of Brazilian fauna and flora, edaphoclimatic conditions in the Cerrado of Minas Gerais, and the situation of utilization of EPNs in Brazil, a survey was conducted in order to relate the presence of these organisms with the physical and chemical attributes of the soil, combined with precipitation. To this end, soil samples were collected in areas with diversified vegetation types in Monte Carmelo, MG, at Juliana Farm. The samples were obtained every 15 days for 6 months. From each spot, soil samples (about 500 g) were collected for soil moisture characterization, nematode isolation and determination of pH, organic matter, potassium (K), calcium (Ca), magnesium (Mg), phosphorus (P), potential acidity (H + Al) and precipitation data (mm). Three populations of entomopathogenic nematodes of the Heterorhabditis amazonensis species were isolated in Cerrado stricto sensu and Gallery forest areas. The occurrence H. amazonensis could not be considered restricted to specific soil condition, as organic matter, humidity, pH, Ca, K, Mg and H + Al, especially considering the organic matter and K values, which had variable levels between the places of collection. The p values of the positive soil samples were at a lower level than the mean of the Gallery forest and Cerrado, and at the same level as maize and pasture area. The soil moisture in the Cerrado area increased with the higher values of precipitation; however, in the Gallery forest area this association was not observed. Also, the nematodes were isolated when the temperature began to decrease.     

<Emphasis Type="Italic">Xyris irwinii</Emphasis> (Xyridaceae), a new <Emphasis Type="Italic">cerrado</Emphasis> species from Goiás,Brazil

Xyris irwinii (Xyridaceae), a new species from the cerrado of Goiás, Brazil is described and illustrated. The distribution, phenology, and conservation status of the new species are presented, as well as a comparison of a complex of morphologically related cerrado species.     

Effects of soil fertility on early development of wetland vegetation from soil seed bank: Focusing on biomass production and plant species diversity

To examine the effects of soil fertility on biomass production, plant species diversity, and early vegetation development, we performed a mesocosm experiment using soil seed bank under three soil fertility levels (ombrotrophic, mesotrophic, and eutrophic). Biomass production linearly increased (P < 0.01), whereas plant species diversity significantly decreased (P < 0.001) as soil fertility increased. Soil fertility seemed to play a role as an environmental sieve in early vegetation development, in turn, lead the patterns of biomass production and plant species diversity. Several Poaceae species which are forming tall and dense canopy, such as Phalaris arundinacea, Miscanthus sacchariflorus, and Zizania latifolia, showed higher importance values under fertilized condition, whereas relatively small macrophytes of Eleocharis acicularis, Carex dickinsii, and Isachne globosa mainly survived under ombrotrophic condition. Although plant species richness decreased as soil fertility increased, the percentages of perennials and exotics increased rather than annuals and natives. Predominance of perennials and exotics under eutrophic condition in early vegetation development seemed to lead a continuous decrease in plant species diversity as a result of competitive effect. A significant negative relationship between plant species diversity and biomass production (P < 0.0001) was obtained when all experimental plots are included in correlation analysis.     

Multilocus phylogeny of <Emphasis Type="Italic">Clonostachys</Emphasis> subgenus <Emphasis Type="Italic">Bionectria</Emphasis> from Brazil and description of <Emphasis Type="Italic">Clonostachys chloroleuca</Emphasis> sp. nov.

Phylogenetic analyses based on protein-encoding gene exons and introns of ATP citrate lyase (ACL1), beta tubulin (TUB), the largest subunit of RNA polymerase II (RPB1), and translation elongation factor 1-α (TEF1) are used for inferring the existence of a new Clonostachys species from the Cerrado biome in Brazil, described here as C. chloroleuca. The species produces dimorphic, primary, and secondary conidiophores that form consistently greenish conidial masses on artificial media. It resembles therefore C. rosea f. catenulata although it differs from this species by less adpressed branches in the secondary conidiophores. The new species is also phylogenetically related to C. byssicola and C. rhizophaga. Our inventory suggests that C. byssicola, C. chloroleuca, C. pseudochroleuca, C. rhizophaga, C. rogersoniana, and C. rosea commonly occur in native and agriculturally used soils of the Cerrado and Amazon Forest. Using sequences available from two genome-sequenced strains employed as biological control agents, we confirm the identity of the European strain IK726 as C. rosea and identify strain 67-1 from China as C. chloroleuca.     

Yeast Communities of the Moscow City Soils

Yeast abundance and diversity were studied in the soils (topsoil) of Moscow city: urban soils under lawn vegetation and close to the areas of household waste disposal, as well as in zonal soddy-podzolic soils (retisols) in parks (Losiny Ostrov and Izmailovo). The numbers of soil yeasts were similar in all studied urban biocenoses (on average ~3.5 × 10³ CFU/g). From all studied soils, 54 yeast species were isolated. The highest yeast diversity was found in the soils adjacent to the areas of household waste storage. Soils from different urban sites were found to have different ratios of ascomycetous and basidiomycetous yeasts: basidiomycetes predominated in urban soils under lawn vegetation, while in the areas close to the waste disposal sites their share was considerably lower. The differences between the studied urban soils were also found in the structure of soil yeast complexes. In urban soils with high anthropogenic impact, the isolation frequency of clinically important yeast species (Candida parapsilosis, C. tropicalis, Diutina catenulata, and Pichia kudriavzevii) was as high as 35% of all studied samples, while its share in the community was 17%. The factors responsible for development of specific features of yeast communities in various urban soils are discussed in the paper.     

Genetic drift and uniform selection shape evolution of most traits in <Emphasis Type="Italic">Eugenia dysenterica</Emphasis> DC. (Myrtaceae)

Knowing how microevolutionary processes, such as genetic drift and natural selection, shape variation in adaptive traits is strategic for conservation measures. One way to estimate local adaptation is to compare divergences in quantitative traits (Q_ST) and neutral loci (F_ST). Therefore, we have assessed the pattern of phenotypic and molecular genetic divergence among natural subpopulations of the fruit tree Eugenia dysenterica DC. A provenance and progeny test was performed to assess the quantitative traits of the subpopulations collected in a wide distribution area of the species in the Brazilian Cerrado. The sampled environments are in a biodiversity hotspot with heterogeneous soil and climate conditions. By associating quantitative trait variation in initial seedling development with neutral microsatellite marker variation, we tested the local adaptation of the traits by the Q_ST–F_ST contrast. Genetic drift was prevalent in the phenotypic differentiation among the subpopulations, although the traits seedling emergence time and root green mass, which are relevant for adaptation to the Cerrado climate, showed signs of uniform selection. Our results suggest that E. dysenterica has a spatial genetic structure divided into two large groups, separated by a line that divides the Cerrado biome in a southwestern to northeastern direction. This structure must be taken into account for managing E. dysenterica genetic resources both for conservation and breeding purposes.     

Domestic pig uprooting emerges as an undesirable disturbance on vegetation and soil properties in a plateau wetland ecosystem

Pig disturbances are recognized as key factors influencing the structure of ecosystems. Cage-free domestic pig (Sus scrofa domestica) searching for food by uprooting vegetation is emerging as a threat to wetlands located in Qinghai-Tibet Plateau. As a unique and fragile ecosystem, the ecological impacts of pig uprooting (PR) here remain unclear. Here, we examined vegetation and soil properties under PR in the meadows of a plateau wetland, Napahai. Quadrat surveys and sampling were taken during the late growing season (September) of 2014 at three sites: one was seasonally flooded (wet meadow) and the other two were unflooded (dry meadows). Compared to controls (pig-undisturbed patches), plant biomass and density decreased (p < 0.001), while soil bulk density increased (p < 0.05) for all sites under PR. In addition, divergent responses to pig disturbances were observed in different sites. In the wet meadow, PR caused a shift in vegetation from Blysmus sinocompyessus, a dominant perennial herb towards the annual hydrophyte Polygonum hydropiper. In the two dry meadows, the dominant species remained unchanged, but nutrients stored in soils were severely reduced by PR, accelerating the soil impoverishment when compared to the wet meadow. Overall, PR impacts on local ecosystems are largely dependent on the moisture characteristics of micro-habitats, and proper management should be taken to counteract ecosystem degradation, especially in dry meadows.     

Microbial Diversity in Cerrado Biome (Neotropical Savanna) Soils

The Cerrado, the largest savanna region in South America, is located in central Brazil. Cerrado physiognomies, which range from savanna grasslands to forest formations, combined with the highly weathered, acidic clay Cerrado soils form a unique ecoregion. In this study, high-throughput sequencing of ribosomal RNA genes was combined with shotgun metagenomic analysis to explore the taxonomic composition and potential functions of soil microbial communities in four different vegetation physiognomies during both dry and rainy seasons. Our results showed that changes in bacterial, archaeal, and fungal community structures in cerrado denso, cerrado sensu stricto, campo sujo, and gallery forest soils strongly correlated with seasonal patterns of soil water uptake. The relative abundance of AD3, WPS-2, Planctomycetes, Thermoprotei, and Glomeromycota typically decreased in the rainy season, whereas the relative abundance of Proteobacteria and Ascomycota increased. In addition, analysis of shotgun metagenomic data revealed a significant increase in the relative abundance of genes associated with iron acquisition and metabolism, dormancy, and sporulation during the dry season, and an increase in the relative abundance of genes related to respiration and DNA and protein metabolism during the rainy season. These gene functional categories are associated with adaptation to water stress. Our results further the understanding of how tropical savanna soil microbial communities may be influenced by vegetation covering and temporal variations in soil moisture.     

Mutual affinities of Santalalean families

The paper represents a reassessment of familial relationships within the Order Santalales. Rafflesiaceae, Hydnoraceae, and Balanophoraceae are excluded from the order, and their reproductive similarities with some Santalales regarded as evolutionary convergence. The exclusion of Grubbiaceae from Santalales sponsored by other workers is accepted, as is the reassignment to other families of the two only genera of Octoknemaceae. The remaining members of the order are placed into six families, viz. Olacaceae (possibly representing several smaller families); Santalaceae; Loranthaceae (sensu stricto); Viscaceae (sensu stricto); Myzodendraceae ; and Eremolepidaceae (containingEremolepis, Eubrachion, andAntidaphne). It is suggested thatLepidoceras, formerly placed near the above three genera, is more properly placed in Loranthaceae (sensu stricto) nearTupeia. The proposed scheme of affinities of the families of Santalales, as reconstituted, is based to a large extent on inflorescence structure, but is supported by floral morphology and other features. The thesis is defended that Loranthaceae (sensu stricto), Santalaceae, Myzodendraceae, and Eremolepidaceae represent four inde pendent lines of development from portions of the Olacacean complex. Viscaceae (sensu stricto) may be derived directly from Santalaceae.     

Impact of plant growth-promoting bacteria on grain yield,protein content,and urea-<Superscript>15</Superscript> N recovery by maize in a Cerrado Oxisol

Background and aims

The inoculation of cereal crops with plant growth-promoting bacteria (PGPB) is a potential strategy to improve fertilizer-N acquisition by crops in soils with low capacity to supply N. A study was conducted to assess the impact of three inoculants on grain yield, protein content, and urea-¹⁵ N recovery in maize (Zea mays L.) under Cerrado soil and climate conditions.

Methods

The main treatments included inoculants containing (i) Azospirillum brasilense strain Sp245, (ii) A. brasilense strains AbV5 + AbV6, (iii) Herbaspirillum seropedicae strain ZAE94, and (iv) a non-inoculated control. The subtreatments were (i) urea-N fertilization (100 kg N ha^?1) at 30 days after sowing and (ii) no N addition at the stage. To determine fertilizer-N recovery, ¹⁵N–labelled urea was applied in microplots.

Results

Inoculants carrying A. brasilense improved urea-¹⁵ N acquisition efficiency in maize and also improved grain yield compared to the non-inoculated control, while urea-N fertilization enhanced grain quality by providing higher protein content.

Conclusion

Our results suggest that the inoculation of maize grains with PGPB represents a strategy to improve fertilizer-N recovery and maize yield in Cerrado soil with a low capacity to supply N.

     

Ticks (Acari: Ixodidae) in the Serra da Canastra National Park in Minas Gerais,Brazil: species,abundance, ecological and seasonal aspects with notes on rickettsial infection

The Cerrado Biome is the second largest in Brazil covering roughly 2 million km², with varying features throughout its area. The Biome is endangered but it is also source of animal species for rural, green urban and degraded rainforest areas. Ticks are among Cerrado species that establish at anthropogenic sites and although information about them is steadily increasing, several features are unknown. We herein report tick species, abundance and some ecological relationships within natural areas of the Cerrado at higher altitudes (800–1500 m) within and around Serra da Canastra National Park, in Minas Gerais State Brazil. In total of 1196 ticks were collected in the environment along 10 campaigns held in 3 years (2007–2009). Amblyomma sculptum was the most numerous species followed by Amblyomma dubitatum and Amblyomma brasiliense. Distribution of these species was very uneven and an established population of A. brasiliense in the Cerrado is reported for the first time. Other tick species (Amblyomma ovale, Amblyomma nodosum, Amblyomma parvum, Ixodes schulzei and Haemaphysalis leporispalustris) were found in lesser numbers. Domestic animals displayed tick infestations of both rural and urban origin as well as from natural areas (Rhipicephalus sanguineus sensu lato, Rhipicephalus microplus, Dermacentor nitens, A. sculptum, A. ovale, Amblyomma tigrinum, Argas miniatus). Amblyomma sculptum had the widest domestic host spectrum among all tick species. DNA of only one Rickettsia species, R. bellii, was found in an A. dubitatum tick. Several biological and ecological features of ticks of the studied areas are discussed.     

Food habits of three carnivores in a mosaic landscape of São Paulo state,Brazil

São Paulo is the most developed state in Brazil, but despite intense land use changes, some mammal species still inhabit remnant fragments of native vegetation of the state. We used fecal analyses to investigate prey diversity, trophic niche breadth, and trophic niche overlap of pumas, ocelots, and maned wolves in protected and non-protected areas in São Paulo state. During 18 months, we inspected more than 10,000 km of roads and trails and collected 233 fecal samples. Maned wolves showed generalist food habit, ocelots were predominantly carnivores, and pumas were strict carnivores. The European hare, an exotic species which had not yet been reported in the study area, was identified in the feces of a puma. Trophic niche breadth was the lowest for maned wolves (BA?=?0.339) and the highest for pumas (BA?=?0.723). Trophic niche overlap was high between maned wolves and ocelots (O_jk?=?0.765) and between pumas and ocelots (O_jk?=?0.639). Significantly different diets of maned wolves and ocelots were observed between dry and rainy seasons. Our findings indicate that these three species may adapt their diets to the disturbed landscapes. This is the second study characterizing food habits of ocelots in Cerrado areas but the first considering a large number of samples.     

Crop rotation associating a legume and the nickel hyperaccumulator <Emphasis Type="Italic">Alyssum murale</Emphasis> improves the structure and biofunctioning of an ultramafic soil

Nickel (Ni) agromining aims to phytoextract heavy metals using hyperaccumulators whilst at the same time rehabilitating ultramafic soils. After removing the bioavailable metal, ultramafic soils are improved in terms of their agronomic properties with the aim of future agricultural uses. The low fertility of ultramafic soils can be compensated by integrating legumes already used in traditional agro-systems because of their importance in soil nitrogen enrichment. However, few studies have evaluated the potential profits of legumes on Ni agromining and their potential benefits on soil biological fertility. Here, we characterized the effect of a crop rotation with two plants, a legume (Vicia sativa) and a hyperaccumulator (Alyssum murale), on the phytoextraction efficiency and on soil structure and biofunctioning. A pot experiment was set up in controlled conditions to grow A. murale and four treatments were tested: rotation with V. sativa (Ro), fertilized mono-culture (FMo), non-fertilized mono-culture (NFMo) and bare soil without plants (BS). No significant difference was found between the Ro and NFMo treatments for the dry biomass yield. However, the Ro treatment showed the highest Ni concentrations ([Ni]) in A. murale shoots compared to FMo and NFMo treatments. The Ro treatment plants had more than twice as many leaves [Ni] compared to FMo. Soil physico-chemical analyses showed that the Ro treatment was better structured and showed the highest presence of bacterial micro-aggregates, as well as less non-aggregated particles. Legumes integration in Ni-agromining systems could be a pioneering strategy to reduce chemical inputs and to improve soil biofunctioning and thus fertility.