Effect of the Aegean Sea barrier between Europe and Asia on differentiation in Juniperus drupacea (Cupressaceae)

Juniperus drupacea is an eastern Mediterranean mountain tree with a disjunct geographical range. We hypothesized that this disjunct occurrence (the Peloponnese in Europe and the Taurus and Lebanon Mountains in Asia) should be reflected in the patterns of genetic and morphological diversity and differentiation. Nuclear microsatellite markers (nSSR) and biometric variables of the cones and seeds were examined on material sampled from four populations in Europe and eight in Asia. The Asian populations were characterized by a higher level of genetic diversity than the European populations. The genetic differentiation among populations was moderate but significant (F_ST = 0.101, P < 0.001). According to the clustering performed with BAPS, six genetically and geographically groups of populations were found: I and II from the Peloponnese; III from the Taurus Mountains; IV and V from the Anti‐Taurus Mountains; and VI from the Lebanon Mountains. The level of genetic differentiation among these six groups (4.30%, P = 0.012) probably reflects long‐lasting genetic isolation during the Pleistocene, as limited genetic admixture was found. In accordance with genetic analysis, the biometric investigations indicated a high level of morphological divergence between the European and Asian populations of the species, with further differentiation between the populations from the Taurus and Lebanon Mountains.     

Multiple origins of cultivated grapevine (Vitis vinifera L. ssp. sativa) based on chloroplast DNA polymorphisms

The domestication of the Eurasian grape (Vitis vinifera ssp. sativa) from its wild ancestor (Vitis vinifera ssp. sylvestris) has long been claimed to have occurred in Transcaucasia where its greatest genetic diversity is found and where very early archaeological evidence, including grape pips and artefacts of a 'wine culture', have been excavated. Whether from Transcaucasia or the nearby Taurus or Zagros Mountains, it is hypothesized that this wine culture spread southwards and eventually westwards around the Mediterranean basin, together with the transplantation of cultivated grape cuttings. However, the existence of morphological differentiation between cultivars from eastern and western ends of the modern distribution of the Eurasian grape suggests the existence of different genetic contribution from local sylvestris populations or multilocal selection and domestication of sylvestris genotypes. To tackle this issue, we analysed chlorotype variation and distribution in 1201 samples of sylvestris and sativa genotypes from the whole area of the species' distribution and studied their genetic relationships. The results suggest the existence of at least two important origins for the cultivated germplasm, one in the Near East and another in the western Mediterranean region, the latter of which gave rise to many of the current Western European cultivars. Indeed, over 70% of the Iberian Peninsula cultivars display chlorotypes that are only compatible with their having derived from western sylvestris populations.     

Female philopatry in coastal basins and male dispersion across the North Atlantic in a highly mobile marine species, the sperm whale (Physeter macrocephalus)

The mechanisms that determine population structure in highly mobile marine species are poorly understood, but useful towards understanding the evolution of diversity, and essential for effective conservation and management. In this study, we compare putative sperm whale populations located in the Gulf of Mexico, western North Atlantic, Mediterranean Sea and North Sea using mtDNA control region sequence data and 16 polymorphic microsatellite loci. The Gulf of Mexico, western North Atlantic and North Sea populations each possessed similar low levels of haplotype and nucleotide diversity at the mtDNA locus, while the Mediterranean Sea population showed no detectable mtDNA diversity. Mitochondrial DNA results showed significant differentiation between all populations, while microsatellites showed significant differentiation only for comparisons with the Mediterranean Sea, and at a much lower level than seen for mtDNA. Samples from either side of the North Atlantic in coastal waters showed no differentiation for mtDNA, while North Atlantic samples from just outside the Gulf of Mexico (the western North Atlantic sample) were highly differentiated from samples within the Gulf at this locus. Our analyses indicate a previously unknown fidelity of females to coastal basins either side of the North Atlantic, and suggest the movement of males among these populations for breeding.     

Diversity, distinctiveness and conservation status of the Mediterranean coastal dung beetle assemblage in the Regional Natural Park of the Camargue (France)

The Mediterranean region as a whole has the highest dung beetle species richness within Europe. Natural coastal habitats in this region are among those which have suffered severe human disturbance. We studied dung beetle diversity and distinctiveness within one of the most important coastal protected areas in the west Euro‐Mediterranean region (the regional Park of Camargue, southern France) and made comparisons of dung beetle assemblages with other nearby Mediterranean localities, as well as with other coastal protected area (Doñana National Park, Spain). Our finding showed that: (1) The species richness of coastal habitats in the Camargue is low and only grasslands showed a similar level of species richness and abundance to inland habitats of other Mediterranean localities. The unique habitats of the coastal area (beaches, dunes and marshes) are largely colonized by species widely distributed in the hinterland. (2) In spite of their low general distinctiveness, dune and marsh edges are characterized by the occurrence of two rare, vulnerable, specialized and large roller dung beetle species of the genus Scarabaeus. As with other Mediterranean localities, current findings suggest a recent decline of Scarabaeus populations and the general loss of coastal dung beetle communities in Camargue. (3) The comparison of dung beetle assemblages between the Camargue and Doñana shows that, in spite of the low local dung beetle species richness in the Camargue, the regional dung beetle diversity is similar between both protected areas. Unique historical and geographical factors can explain the convergence in regional diversity as well as the striking divergence in the composition of dung beetle assemblages between both territories.     

Ecological specialization promotes diversity and diversification in the Eastern Mediterranean genus Ricotia (Brassicaceae)

Despite its amazing biodiversity, the Eastern Mediterranean remains a highly understudied region when compared withthe Western Mediterranean, restricting our understanding of diversity across the entire Mediterranean. Here we use a combination of molecular markers and presence/absence data from all species of the Eastern Mediterranean genus Ricotia collected across its full geographic range to determine historical, ecological, and evolutionary factors responsible for lineage-specific diversification in the Eastern Mediterranean. Network analysis based on molecular data revealed a high genetic structure within all lineages, and phylogenetic reconstructions based on the multispecies coalescent showed that within-lineage diversification corresponded to the onset of the Mediterranean climate. Reconstruction of ancestral histories indicates that the genus originated within Anatolia and spread across the Eastern Mediterranean and Levant using the Taurus mountains. Ecological niche models suggest that local populations did not go through any major distributional shifts and have persisted in present-day habitats since the Last Glacial Maximum. Furthermore, niche differentiation tests revealed significant differences between closely related species and showed the main variables predicting species limits to be different for each species. Our results give crucial information on the patterns and processes shaping diversity in the Eastern Mediterranean and show the main factors promoting diversification to be local environmental dynamics and ecological specialization and not large-scale latitudinal movements, as often reported for southern Europe. By determining local and regional patterns of diversification in an Eastern Mediterranean genus, we further our understanding of the major trends influencing plant diversity in the Mediterranean basin as a whole.     

Distribution of Tettigoniinae (Orthoptera, Tettigoniidae) bush-crickets in Turkey: the importance of the Anatolian Taurus Mountains in biodiversity and implications for conservation

The distribution of Tettigoniinae (Orthoptera, Tettigoniidae) specieswithin four phytogeographical provinces in Turkey is reviewed and presented onthe basis of field and collection studies during 1987–2001 andmiscellaneous data from previous literature. One hundred and sixty speciesbelonging to 28 genera have been recorded. The Anatolian species constituteapproximately 30% of the world-wide species of the subfamily, with a very highproportion (83%) being endemic or semi-endemic, nearly all of which arebrachypterous. Regarding the numbers of total and endemic species, theprovinces can be ordered as follows: Mediterranean > Irano-Anatolian >Euxin > Mesopotamia. Also, Anatolian Tettigoniinae have a very high rate ofendemism in each province; 84.1% in the Mediterranean, 78.1% in Irano-Anatolia,56.3% in Mesopotamia and 42.4% in Euxin. The two provinces in Anatolia havingthe greatest species diversity are also the two most mountainous provinces, soit is suggested that a primary factor in Tettigoniinae diversity is theAnatolian Taurus mountains. Finally, some conclusions are drawn on biodiversityand conservation of Tettigoniinae species in Anatolia and I have suggested 23species to be included in the 'IUCN Red List' under VU B2+ac.     

Biogeography and Genetic Structure in Populations of a Widespread Lichen (Parmelina tiliacea,Parmeliaceae, Ascomycota)

The genetic diversity and population structure of the foliose lichenized fungus Parmelina tiliacea has been analyzed through its geographical range, including samples from Macaronesia (Canary Islands), the Mediterranean, and Eurosiberia. DNA sequences from the nuclear ribosomal internal transcribed spacer, the mitochondrial large subunit ribosomal RNA gene, and the translation elongation factor 1-α were used as molecular markers. The haplotypes of the three markers and the molecular variance analyses of multilocus haplotypes showed the highest diversity in the Canary Islands, while restricted haplotypes occurred at high frequencies in Mediterranean coastal samples. The multilocus haplotypes formed three unevenly distributed clusters (clusters 1-3). In the Canary Islands all the haplotypes were present in a similar proportion, while the coastal Mediterranean sites had almost exclusively haplotypes of cluster 3; cluster 2 predominated in inland Mediterranean sites; and cluster 1 was more abundant in central and northern Europe (Eurosiberian area). The distribution of clusters is partially explained by climatic factors, and its interaction with local spatial structure, but much of the variation remains unexplained. The high frequency of individuals in the Canary Islands with haplotypes shared with other areas suggests that could be a refugium of genetic diversity, and the high frequency of individuals of the Mediterranean coastal sites with restricted haplotypes indicates that gene flow to contiguous areas may be restricted. This is significant for the selection of areas for conservation purposes, as those with most genetic variation may reflect historical factors and biological properties of the species.     

Impacts of future climate scenarios on hypersaline habitats and their conservation interest

This study is focused on determining the response behaviour of five saline plant communities to two environmental variables: flooding and salinity. Also, total soil organic carbon, diversity, plant cover and vegetation height were measured. Once this behaviour is known, the impacts of future climate scenarios may be approached. Since some of these variables could be altered by climate change, the future vegetation dynamics might indicate the trending of change, so plant communities can be used as bioindicators. The investigation was carried out in some small coastal wetlands located in a semiarid Mediterranean region. Low values of diversity were found in these plant communities due to a great effect of flooding, followed by salinity. ‘Reed beds’ are bioindicators of flooding and environmental disturbance. ‘Saline rushes’ are also flooding bioindicators and efficient accumulators of organic matter. ‘Mediterranean halophilous scrubs’ are bioindicators of seasonal flooding and changes to salinity. ‘Mediterranean halo-nitrophilous scrubs’ might be considered as bioindicators of low flooding and low salinity in anthropic environment while ‘Mediterranean salt steppes’ bioindicate driest conditions. At present, Mediterranean halophilous scrubs are the most widely extended community, which could be interpreted as a consequence of a changing and sharply seasonal climate. Our research suggests that future climate change scenarios involving flooding increases would support the proliferation of the lowest diversity and thus lower ecological value plant communities (i.e. reed beds). Conversely, a future scenario of decreasing flooding would benefit the most diverse and valuable conservation community actually priortized by European Habitats Directive (Mediterranean salt steppes, Limonietalia).     

基于染色体计数和ITS序列初步探讨横断山区柴胡属植物(伞形科)的系统发育

横断山区是中国柴胡属Bupleurum植物的分布中心。本文对横断山区6个种2变种进行了染色体记数报道,其中4个种2变种是首次报道。对横断山区的10个种4个变种、中国北方（河北和黑龙江）的3个种的nrDNA ITS进行测序,同时从GenBank里面下载同属的来自非洲和地中海西部的16个nrDNA ITS序列数据,结合染色体数目变化结果,初步探讨了横断山区柴胡属植物的系统发育。结果表明横断山区可能是现代柴胡属植物的频度中心和多样分布中心之一。它们的祖先种可能是非洲北部的木本柴胡属植物B.fruticosum,或者是地中海西部的柴胡属植物,推测是通过中东和高加索扩散而形成的,其中与非洲南部特有种B.mundtii的亲缘关系也较近;染色体基数演化趋势是：8是较原始基数,6和7是次生基数,其染色体异基数变异和多倍化可能是物种形成、进化以及向外扩散的主要方式;在ITS系统发育树中,中国柴胡属植物染色体基数为8的种类聚为一支,染色体基数为6和7的种类聚为了一支,不支持舒璞等（1998）关于中国柴胡属的属下分类系统。结合已有的形态学、细胞学、孢粉学证据和ITS系统发育树,建议窄竹叶柴胡B.marginatum var.stenophyllum独立成种。     

Traditional Tar Production from <Emphasis Type="Italic">Cedrus libani</Emphasis> A. Rich on the Taurus Mountains in Southern Turkey

Traditional Tar Production from Cedrus libani A. Rich on the Taurus Mountains in Southern Turkey. Cedrus libani A. Rich is a magnificent and sacred tree species native to the eastern Mediterranean region. Today, traditional people in southern Turkey produce wood extract, called katran, from C. libani, and use it to protect wooden structures against insects and fungi, to fight parasites and bacteria, and to heal wounds and cure various diseases in humans and domestic animals, both internally and externally. Here we illustrate traditional methods of producing katran, its use by local people, and its chemical composition.     

Assessment of a new hotspot for plant biodiversity in the Mediterranean basin (North Africa)

The concept of biodiversity hotspot at the regional and global scale has contributed to the improvement of the conservation strategies. The need for precise evaluation is often hampered by lapses of knowledge in some Mediterranean regional hotspots. The objective of the present work is to analyse the diversity of endemic and rare flora in the northern part of Algeria. According to the bibliographical data that are available, the most remarkable areas for endemism are the Oran's coast, the Great Kabylia, and the Small Kabylia. As far as rare species are concerned, coastal Numidia comes first, then the Algiers surroundings. This group 'Kabylias-Numidia-Kroumiria' comprises an unrecognised regional hotspot, made of forests, mountains and coastal ecosystems and threatened by human activities. In the face of growing threats, it is urgent to reinforce national and international policies of conservation and to cooperate for a better floristic knowledge of all the areas mentioned above.     

Erosion of insect diversity in response to 7000 years of relative sea-level rise on a small Mediterranean island

We have investigated the potential effects of global sea-level rise on Mediterranean coastal wetlands by studying the Coleoptera and pollen fossil remains in a 7000-year sedimentary record, which we obtained from a coastal marshy area on a small Mediterranean island (Cavallo, southern Corsica). Using beetle structural diversity and plant composition as recorded prior to marine and human influences as a ‘past analogue’, we reconstructed the impact of the Holocene relative sea-level rise on the coastal ecosystem. Our results show that beetle species richness and diversity were highest when freshwater was predominant, which was the case until about 6200 years ago. We also found that a major increase in salinity had occurred over the last 5300 years, experiencing a peak rate of increase at about 3700 years ago. These changes are clearly reflected in the fossil records of the following key taxa: halophilous beetles (Ochthebius sp., Pterostichus cursor), halophilous plants (Chenopodiaceae, Tamarix) and non-pollen palynomorphs (microforaminiferal linings). In particular, we note that the majority (60%) of wetland beetle fauna became locally extinct in response to the salinity changes, and these changes were exacerbated by the recent aggravation of human pressures on the island. The major part of this diversity loss occurred 3700 years ago, when the relative Mediterranean sea-level rose above ?1.5 ± 0.3 meters. These findings demonstrate the value of fossil beetle assemblage analysis as a diagnostic for the response of coastal wetland biodiversity to past salinity increases, and serve as a means of forecasting the effects of sea-level rise in the future. The conservation of inland freshwater bodies could ultimately prove essential to preserving freshwater insect diversity in threatened coastal environments.     

Local patterns of diversity in California northern coastal scrub

Within global biodiversity hotspots such as the California Floristic Province, local patterns of diversity must be better understood to prioritize conservation for the greatest number of species. This study investigates patterns of vascular plant diversity in relation to coast–inland environmental gradients in the shrublands of Central California known as northern coastal scrub. We sampled coastal shrublands of the San Francisco Bay Area at coastal and inland locations, modeled fine‐scale climatic variables, and developed an index for local exposure to maritime salts. We compared diversity, composition, and structure of the coastal and inland plots using indirect gradient analysis and estimated species accumulation using rarefaction curves. Coastal plots were significantly higher in alpha, beta, and gamma diversity than inland plots. Plant diversity (effective species number) in coastal plots was 2.1 times greater than inland plots, and beta diversity was 1.9 times greater. Estimated richness by rarefaction was 2.05 times greater in coastal sites than inland sites. Salt deposition and water availability were the abiotic process most strongly correlated with increased maritime plant diversity and compositional differences. Stands of northern coastal scrub on the immediate coast with higher maritime influence exhibit markedly higher plant diversity than most interior stands, paralleling previous work in other vegetation types in this region. These studies suggest that the California coastline deserves special consideration for botanical conservation. Fine‐scale climatic models of cloud frequency, water availability, and the salt deposition index presented here can be used to define priority areas for plant conservation in California and other coastal regions worldwide.     

Phylogenetic inference of the genus Bupleurum (Apiaceae) in Hengduan Mountains based on chromosome counts and nuclear ribosomal DNA ITS sequences

pleurum of Apiaceae in China. This paper reports chromosome numbers of six species and two varieties of Bupleurum, and for four species and two varieties their chromosome numbers are reported for the first time. The phylogeny of Bupleurum was investigated based on the ITS region of the nuclear ribosomal DNA (nrDNA) of 14 taxa from the Hengduan Mountains, 3 taxa from the North China (Hebei and Heilongjiang), and 16 taxa from Africa and the Mediterranean region. Varia-tions in chromosome numbers and the ITS sequences were used to infer phylogenetic relationships between Bupleurum species in Hengduan Mountains. The results showed that the Hengduan Mountains might represent one of the frequency and diversity centers for Bupleurum. The ancestors of Bupleurum species in the Hengduan Mountains may be related to the woody B. fruticosum in North Africa, or the species in the western Mediterranean region. It is postulated that the ancestral population migrated into Hengduan Mountains through the Middle East and the Caucasus. Furthermore, the neo-endemic B. mundtii in South Africa appeared to be a close relative of the species in the Hengduan Mountains. In the trend of basic chromosome number evolution, x = 8 should be regarded as the ancestral basic number, while x = 6, 7 as the derived ones. The Bupleurum species in the Hengduan Moun-tains have been undergoing changes in the basic chromosome numbers or the ploidy level. The ITS phylogenetic tree showed that the Chinese species were divided into two clades: one with the basic chromosome number x = 8, and the other with x = 6, 7. The results rejected the previous infrageneric classification of Bupleurum in China. We further suggested to raise B. marginatum var. stenophyllum to species rank based on the combined evidence from morphology, karyology, pollen morphology, and the ITS phylogenetic tree.     

Major gaps in the distribution of protected areas for threatened and narrow range Afrotropical plants

We investigated the major patterns of plant rarity in sub-Saharan Africa, and looked for the most significant gaps in the reserve network of the region in terms of representing the distribution of threatened and geographically rare plants. Comparisons of the species ranges captured by the network of reserves were made against the proportion of species captured by randomly generated sets of areas and against a theoretical near minimum set of areas that represent all species once. At this scale of analysis, the network of large IUCN-coded reserves (the official ‘protected areas’) performs poorly against random and systematic selection procedures. Significant gaps in the IUCN-coded protected areas are in coastal Gabon/Cameroon, in the various tropical montane forest areas (Cameroon Highlands, Eastern Arc Mountains, Ethiopian Mountains), in lowland coastal eastern Africa, and in the South African Cape. Some of these gaps, for example in the Eastern Arc and eastern African coastal regions, are covered on the ground by a network of Forest Reserves under the management of national Forestry Authorities. The networks of Forest Reserves in Ghana, Nigeria, Cameroon, Uganda, Kenya, Zimbabwe, Zambia and Sierra Leone also fill reservation gaps for rare African plants in these countries. Upgrading the conservation status of some key Forest Reserves, which has been gradually happening for some decades, is proposed as an efficient way to enhance the protected area network of the Afrotropical region for the conservation of rare African plant species.     

Marine biodiversity: patterns, threats and conservation needs

Marine biodiversity is higher in benthic rather than pelagic systems, and in coasts rather than the open ocean since there is a greater range of habitats near the coast. The highest species diversity occurs in the Indonesian archipelago and decreases radially from there. The terrestrial pattern of increasing diversity from poles to tropics occurs from the Arctic to the tropics but does not seem to occur in the southern hemisphere where diversity is high at high latitides. Losses of marine diversity are highest in coastal areas largely as a result of conflicting uses of coastal habitats. The best way to conserve marine diversity is to conserve habitat and landscape diversity in the coastal area. Marine protected areas are only a part of the conservation strategy needed. It is suggested that a framework for coastal conservation is integrated coastal area management where one of the primary goals is sustainable use of coastal biodiversity.     

Glacial refugia influence plant diversity patterns in the Mediterranean Basin

Aim The aims of this study were to assess the distribution of putative Mediterranean refugia of plants, to compare the locations of refugia and those of regional hotspots of plant biodiversity, and to provide a critical analysis of the Mediterranean refugium paradigm. Furthermore, we consider how biogeographical and genetic results can be combined to guide global conservation strategies. Location The Mediterranean region. Methods We started from a detailed analysis of the scientific literature (1993–2007) in order to identify refugia in the Mediterranean region, based on intra‐specific phylogeographical studies of plant species. We used population locations together with gene‐pool identity to establish the database, comparing patterns of phylogeographical concordance with the locations of Mediterranean refugia. We then tested the biogeographical congruence between two biodiversity components, namely phylogeographical refugia and regional hotspots. Results We identified 52 refugia in the Mediterranean bioclimatic region and confirmed the role played by the three major peninsulas, with a shared total of 25 refugia. We emphasize the importance of areas that have previously been attributed a lesser role (large Mediterranean islands, North Africa, Turkey, Catalonia). Of the 52 refugia identified, 33 are situated in the western Mediterranean Basin and 19 in the eastern part. The locations of the phylogeographically defined refugia are significantly associated with the 10 regional hotspots of plant biodiversity, with 26 of these refugia (i.e. 50%) occurring within the hotspots. Main conclusions The locations of refugia are determined by complex historical and environmental factors, the cumulative effects of which need to be considered because they have occurred since the Tertiary, rather than solely during the last glacial period. Refugia represent climatically stable areas and constitute a high conservation priority as key areas for the long‐term persistence of species and genetic diversity, especially given the threat posed by the extensive environmental change processes operating in the Mediterranean region. The refugia defined here represent ‘phylogeographical hotspots’; that is, significant reservoirs of unique genetic diversity favourable to the evolutionary processes of Mediterranean plant species.     

Risso’s dolphins (<Emphasis Type="Italic">Grampus griseus</Emphasis>) in UK waters are differentiated from a population in the Mediterranean Sea and genetically less diverse

The Risso’s dolphin (Grampus griseus) has a worldwide distribution, but little is known about their population genetic structure. Local coastal populations are never known to be abundant, and are sometimes under anthropogenic impact. Therefore the question of regional differentiation by genetic drift and overall diversity levels is of conservation interest. Here we present preliminary data that clearly indicate genetic differentiation and lower genetic diversity of a population sampled in UK waters (primarily from the Western Isles, Scotland) compared to a Mediterranean sample. Significant differentiation was found in comparison with a sample from the Mediterranean for both microsatellite DNA markers (F _ST = 0.0296) and mtDNA sequence data (F _ST = 0.260; ϕ _ST = 0.542). Allelic diversity was lower in the UK for nearly all loci.