Type I and II β-turns prediction using NMR chemical shifts

A method for predicting type I and II β-turns using nuclear magnetic resonance (NMR) chemical shifts is proposed. Isolated β-turn chemical-shift data were collected from 1,798 protein chains. One-dimensional statistical analyses on chemical-shift data of three classes β-turn (type I, II, and VIII) showed different distributions at four positions, (i) to (i + 3). Considering the central two residues of type I β-turns, the mean values of C_ο, C_α, H_N, and N_H chemical shifts were generally (i + 1) > (i + 2). The mean values of C_β and H_α chemical shifts were (i + 1) < (i + 2). The distributions of the central two residues in type II and VIII β-turns were also distinguishable by trends of chemical shift values. Two-dimensional cluster analyses on chemical-shift data show positional distributions more clearly. Based on these propensities of chemical shift classified as a function of position, rules were derived using scoring matrices for four consecutive residues to predict type I and II β-turns. The proposed method achieves an overall prediction accuracy of 83.2 and 84.2 % with the Matthews correlation coefficient values of 0.317 and 0.632 for type I and II β-turns, indicating that its higher accuracy for type II turn prediction. The results show that it is feasible to use NMR chemical shifts to predict the β-turn types in proteins. The proposed method can be incorporated into other chemical-shift based protein secondary structure prediction methods.     

Analysis and prediction of the packing of α-helices against a β-sheet in the tertiary structure of globular proteins

The packing of α-helices and β-sheets in six $\text{α}\text{β}$ proteins (e.g. flavodoxin) has been analysed. The results provide the basis for a computer algorithm to predict the tertiary structure of an $\text{α}\text{β}$ protein from its amino acid sequence and actual assignment of secondary structure.The packing of an individual α-helix against a β-sheet generally involves two adjacent ± 4 rows of non-polar residues on the α-helix at the positions i, i + 4, i + 8, i + 1, i + 5, i + 9. The pattern of interacting β-sheet residues results from the twisted nature of the sheet surface and the attendant rotation of the side-chains. At a more detailed level, four of the α-helical residues (i + 1, i + 4, i + 5 and i + 8) form a diamond that surrounds one particular β-sheet residue, generally isoleucine, leucine or valine. In general, the α-helix sits 10 Å above the sheet and lies parallel to the strand direction.The prediction follows a combinational approach. First, a list of possible β-sheet structures (10⁶ to 10¹⁴) is constructed by the generation of all β-sheet topologies and β-strand alignments. This list is reduced by constraints on topology and the location of non-polar residues to mediate the sheet/helix packing, and then rank-ordered on the extent of hydrogen bonding. This algorithm was uniformly applied to 16 $\text{α}\text{β}$ domains in 13 proteins. For every structure, one member of the reduced list was close to the crystal structure; the root-mean-square deviation between equivalenced C^α atoms averaged 5.6 Å for 100 residues. For the $\text{α}\text{β}$ proteins with pure parallel β-sheets, the total number of structures comparable to or better than the native in terms of hydrogen bonds was between 1 and 148. For proteins with mixed β-sheets, the worst case is glyceraldehyde-3-phosphate dehydrogenase, where as many as 3800 structures would have to be sampled. The evolutionary significance of these results as well as the potential use of a combinatorial approach to the protein folding problem are discussed.     

Differential control of β-endorphin/β-lipotropin secretion from anterior and intermediate lobes of the rat pituitary gland in vitro

The secretion of immunoreactive β-endorphin (β-END_i) and β-lipotropin (β-LPH_i) by neurointermediate lobes (NIL) and anterior lobe (AL) cells of the rat pituitary gland was studied in an $\text{in vitro}$ superfusion system. Peptides were characterized by gel chromatography on Sephadex G-50 and by two radioimmunoassays: a β-LPH assay in which β-END did not crossreact (β-LPH_i) and a β-END/β-LPH assay in which β-END and β-LPH showed full crossreactivity (β-END_i/β-LPH_i).$\text{Intermediate lobe}$. The spontaneous secretion of β-END_i/β-LPH_i by the NIL was 1–2 ng/min/lobe. Chromatography showed that 97% of this β-END_i/β-LPH_i eluted at the position of β-END. Dopamine inhibited the spontaneous secretion of β-END and the dopamine-receptor blocker domperidone prevented this inhibition. Isoprenaline caused a 3–4 fold stimulation of the secretion of β-END. The β-adrenergic receptor blocker propranolol abolished this stimulation. Hypothalamic extract, lys-vasopressin, 5-hydroxytryptamine and histamine were ineffective in changing the spontaneous secretion of β-END_i/β-LPH_i.$\text{Anterior lobe}$. The spontaneous secretion of β-END_i/β-LPH_i by AL cells was 0.15–0.20 ng/min/10⁵ cells. Chromatography revealed that about 70% of this material behaved like β-LPH, 30% behaved like β-END. Hypothalamic extract and lys-vasopressin induced a 3–5 fold increase in the secretion of both β-END and β-LPH. Catecholamine, 5-hydroxytryptamine and histamine were ineffective in changing the spontaneous secretion of β-END_i/β-LPH_i.These results indicate that β-END is the predominant β-LPH-related peptide secreted by the intermediate lobe and that its secretion is inhibited via a dopaminergic receptor mechanism and stimulated via a β-adrenergic receptor mechanism. The secretion of β-END and β-LPH by the anterior lobe is not affected by catecholamines but is stimulated by CRF and vasopressin.     

Beta-turns in proteins

The X-ray atomic co-ordinates from 29 proteins of known sequence and structure were utilized to elucidate 459 β-turns in regions of chain reversals. Tetrapeptides whose αC_iαC_{(i + 3)} distances were below 7 Å and not in a helical region were characterized as β-turns. In addition, β-turns were considered to have hydrogen bonding if their computed O_(i)N_{(i + 3)} distances were ≤3.5 Å. The torsion angles of 26 proteins containing 421 β-turns were examined and classified into 11 bend types based on the (φ, ψ) dihedral angles of the i + 1 and i + 2 bend residues. The average frequency of β-turns is 32% as compared to the 38% helices and 20% β-sheets in the 29 proteins. The most frequently occurring bend residues are Asn, Cys, Asp in the first position, Pro, Ser, Lys in the second position, Asn, Asp, Gly in the third position, and Trp, Gly, Tyr in the fourth position. Residues with the highest β-turn potential in all four positions are Pro, Gly, Asn, Asp, and Ser with the most hydrophobic residues (i.e. Val, IIe, and Leu) showing the lowest bend potential. However, in the region just beyond the β-turns, hydrophobic residues occur with greater frequency than do hydrophilic residues. An environmental analysis of β-turn neighboring residues shows that reverse chain folding is stabilized by anti-parallel β-sheets as well as helix-helix and α-β interactions. The β-turn potential at the 12 positions adjacent to and including the bend were plotted for the 20 amino acids and showed dramatic positional preferences, which may be classified according to the nature of the side-chains. An examination of the 27 β-turns in elastase showed that 21 were found in identical positions as those in α-chymotrypsin. However, only 37 of the 84 bend residues were conserved, indicating that structural similarity may persist despite differences in sequence homology. A survey of residues occupying bend types I′, II′ and III′ showed that Gly appeared most frequently in the third position in bend types I′ and III′ as well as in the second position in bend types II′ and III′. Fourteen hydrogenbonded type II bends were found without a Gly at the third position, contrary to the energy calculations. Eight type VI bends with a cis Pro at the third position were also elucidated.     

Identification of a β-lactamase inhibitory protein variant that is a potent inhibitor of Staphylococcus PC1 β-lactamase

β-Lactamase inhibitory protein (BLIP) binds and inhibits a diverse collection of class A β-lactamases. Widespread resistance to β-lactam antibiotics currently limits the treatment strategies for Staphylococcus infections. The goals of this study were to determine the binding affinity of BLIP for Staphylococcus aureus PC1 β-lactamase and to identify mutants that alter binding affinity. The BLIP inhibition constant (K_i) for PC1 β-lactamase was measured at 350 nM, and isothermal titration calorimetry experiments indicated a binding constant (K_d) of 380 nM. Twenty-three residue positions in BLIP that contact β-lactamase were randomized, and phage display was used to sort the libraries for tight binders to immobilized PC1 β-lactamase. The BLIP_K74G mutant was the dominant clone selected, and it was found to inhibit the PC1 β-lactamase with a K_i of 42 nM, while calorimetry indicated a K_d of 26 nM. Molecular modeling studies suggested that BLIP binds weakly to the PC1 β-lactamase due to the presence of alanine at position 104 of PC1. This position is occupied by glutamate in the TEM-1 enzyme, where it forms a salt bridge with the BLIP residue Lys74 that is important for the stability of the complex. This hypothesis was confirmed by showing that the PC1_A104E enzyme binds BLIP with 15-fold greater affinity than wild-type PC1 β-lactamase. Kinetic measurements indicated similar association rates for all complexes with variation in affinity due to altered dissociation rate constants, suggesting that changes in short-range interactions are responsible for the altered binding properties of the mutants.     

Sequential resonance assignments in protein 1H nuclear magnetic resonance spectra: Computation of sterically allowed proton-proton distances and statistical analysis of proton-proton distances in single crystal protein conformations

Two different, theoretical studies of intramolecular proton-proton distances in polypeptide chains are described. Firstly, the distances between amide, C^α and C^β protons of neighbouring residues in the amino acid sequence, which correspond to the sterically allowed values for the dihedral angles φ_i, ψ_i and χ_i¹, were computed. Secondly, the frequency with which short distances occur between amide, C^α and C^β protons of neighbouring and distant residues in the amino acid sequence were statistically evaluated in a representative sample of globular protein crystal structures. Both approaches imply that semi-quantitative measurements of short, non-bonding proton-proton distances, e.g. by nuclear Overhauser experiments, should present a reliable and generally applicable method for sequential, individual resonance assignments in protein ¹H nuclear magnetic resonance spectra. Similar calculations imply that corresponding distance measurements can be used for resonance assignments in the side-chains of the aromatic amino acid residues, asparagine and glutamine, where the complete spin systems cannot usually be identified from through-bond spin-spin coupling connectivities.     

Relationship between bone resorption and lysosomal enzyme release as demonstrated by the effect of 1α-hydroxy-vitamin D-3 in an organ culture system

The effect of 1α-hydroxy-vitamin D-3 on the release of calcium (⁴⁰Ca, ⁴⁵Ca), inorganic phosphate and lysosomal enzymes, on glucose consumption and lactate production was studied in a bone organ culture system using half calvaria from 6–7-day-old mice. 1α-Hydroxy-vitamin D-3 stimulated the mobilization of minerals and increased the release of β-glucuronidase, β-N-acetylglucosaminidase and acid phosphatase, while no effect on the release of lactate dehydrogenase was seen. 1α-Hydroxy-vitamin D-3 also caused a significant increase in the total activities of acid phosphatase in the bones after culture, indicating increased enzyme synthesis. The stimulatory effect of the release of P_i and β-glucuronidase was also obtained after a temporary exposure to 1α-hydroxy-vitamin D-3. The stimulation by 1α-hydroxy-vitamin D-3 on the release of Ca²⁺, P_i and β-glucuronidase was suppressed by a protein synthesis inhibitor cycloheximide. No effect by 1α-hydroxy-vitamin D-3 on glucose consumption and lactate production was registered, suggesting that increased mineral mobilization does not require increased lactate production. It is concluded that although the data in the present paper do not prove a cause-and-effect relationship between lysosomal enzyme release and bone resorption, they give further support to the concept that the processes are intimately associated.     

Coiling of beta-pleated sheets

To form strongly twisted β-sheets, strands have to be coiled as well as twisted (Nishikawa &; Scherga, 1976). I show that strands coil in the appropriate right-handed direction if their main-chain torsion angles fulfil the following conditions: ψ_i ? ?φ_{i + 1}, ψ_{i + 1} > ?φ_{i + 2}, ψ_{i + 2} ? ?φ_{i + 3}, ψ_{i + 3} > ?φ_{i + 4}…Lactate dehydrogenase, pancreatic trypsin inhibitor, thermolysin and concanavalin A contain strongly twisted β-sheets and in each case the strands are coiled by their φ, ψ values fulfilling these conditions.     

A theory for polarized fluorescence microscopy of chromosome structures

A theory for the determination of DNA arrangements in DNA-containing specimens, using planar aromatic dye molecules as probes for plane polarization of fluorescence, has been described. At low dye-to-DNA concentrations, the dye molecules are sandwiched between the stacked bases of DNA; hence, the fluorescence from the dye bound to a local region of DNA helix is plane-polarized with the polarization direction perpendicular to the local axis of DNA. The degree of such polarization from an aligned DNA-specimen complexed with dye is determined both by the DNA orientation and the conformational state (e.g., base tilt) of DNA into that specimen. Analysis has been made of the relationship between the degree of polarization and the orientation of the emitting dipoles of dye. The dye complexes may be aligned in a mechanical shear or electric field. However, any change in the orientation distribution of the emitting dipoles due to force fields should be taken into account. With some assumptions and approximations, the magnitude and the direction of maximum polarization can be related to different orders of DNA coiling and to their various combinations. Since the measured polarization is averaged over all DNA regions of the specimen, if the magnitude of polarization is appreciable and the polarization occurs in the specific direction of the specimen, the theory helps to eliminate several probable arrangements of DNA. The predominant molecular features of the actual DNA arrangement can be determined through this process of elimination, as explained in two subsequent papers with T-even bacteriophage and chromosome systems.     

Calculation of tilt angles for crystal specimen orientation adjustment using double-tilt and tilt-rotate holders

In this communication we wish to present a group of new equations which can be used to calculate the tilt angle for crystal specimen orientation adjustment in the transmission electron microscope. The experiments were concerned with double-tilt and tilt-rotate holders and the new equations deduced using matrix geometry. The specimen orientation adjustment using the tilt angles calculated by these equations is considered to be more convenient and less time-consuming than following the Kikuchi map method. Our method avoids the difficulties associated with orientation adjustment of severely strained and small grain size specimens using the Kikuchi map procedure. The algorithms for deducing the new equations, together with an experimental example using the equations, are described.     

The affinity of phlorizin-like compounds for a beta-glucosidase in intestinal brush borders: comparison with the glucose transport system

The ability of a series of phlorizin-like glycosides to interact with the active center of the β-glucosidase (phlorizin hydrolase) present in hamster intestinal brush border membranes has been estimated from K_m and K_i measurements. All of the glycosides except para-phlorizin, were cleaved at the same V although large differences in their apparent K_m values were found. The inhibitors of [³H]glucose-labeled phlorizin hydrolysis all acted competitively and their K_i values equaled their respective K_ms with two exceptions: (1) para-phlorizin, an isomer with its sugar residue in a different orientation than any of the other derivatives, is a better inhibitor than substrate and (2) phloretin 2′-galactoside appeared to be a better substrate than inhibitor: it was extensively hydrolyzed, more than would have been predicted from its apparent K_i value. This “extra” hydrolysis was probably due to lactase action. The affinities of these compounds for the glucose transport system and phlorizin hydrolase were compared. The relative inhibitory potency of all but two of the analogs was the same in either system suggesting that there are similarities in the architecture of the two receptors. However, there are differences which indicate that these two membrane components do not share a common site: (1) The K_i values of the glycosides as sugar carrier blockers are 100-fold smaller than their K_iS as hydrolase inhibitors, (2) 4-methoxyphlorizin has somewhat greater affinity for the β-glucosidase than the transporter, and (3) para-phlorizin has essentially no affinity for the glucose carrier but is a good substrate and potent inhibitor of phlorizin hydrolase. Studies designed to isolate and affinity label the phlorizin-receptor component of the transport system must take into account that the intestinal brush border membrane possesses a β-glycosidase whose active site will probably also be labeled and at which phlorizin-like ligands could be inactivated.     

Single versus dual-axis cryo-electron tomography of microtubules assembled in vitro: Limits and perspectives

Single-axis cryo-electron tomography of vitrified specimens has become a method of choice to reconstruct in three dimensions macromolecular assemblies in their cellular context or prepared from purified components. Here, we asked how a dual-axis acquisition scheme would improve three-dimensional reconstructions of microtubules assembled in vitro. We show that in single-axis tomograms, microtubules oriented close to the perpendicular of the tilt axis display diminished contrast, and ultimately transform into sets of parallel lines oriented in the direction of the electron beam when observed in cross-section. Analysis of their three-dimensional Fourier transform indicates that this imaging artifact is due to a decrease in the angular sampling of their equatorial components. Although the second orthogonal series does not fully complement the first one at the specimen level due to increased radiation damage, it still allows elongated features oriented in any directions to be correctly reconstructed, which might be essential for highly heterogeneous specimens such as cells.     

Glycosidases. Ligands for affinity chromotagraphy: II. Syntheses of p-aminophenyl 1-thio-L-fucopyranosides

Syntheses of p-aminophenyl 1-thio-α-L- and β-L-fucopyranosides are described. 1,2,3,4-Tetra-O-acetyl-α-L-fucopyranose, on heating with p-nitrothiophenol in the presence of p-toluenesulfonic acid under diminished pressure, gave a mixture of p-nitrophenyl 2,3,4-tri-O-acetyl-1-thio-α- and β-L-fucopyranosides, which was separated by chromatography on silica gel. When the reaction was carried out in the presence of zinc chloride at atmospheric pressure, the β-anomer was the exclusive product. Deacetylation of the aryl α-L- and α-L-thiofucopyranosides with sodium methoxide, followed by catalytic hydrogenation in the presence of palladium on barium sulfate, afforded the respective aminophenyl 1-thiofucopyranosides. The aryl thiofucopyranosides thus synthesized were tested for their inhibitory activity toward clam α-L-fucosidase. The p-aminophenyl 1-thio α-L-fucopyranoside showed a competitive-type inhibition, with a K_i of 0.71mM.     

Functional Receptor Coupling to Gi Is A Mechanism of Agonist-Promoted Desensitization of the β2-Adrenergic Receptor

Abstract

The β₂-adrenergic receptor (β₂AR) couples to G_s, activating adenylyl cyclase (AC) and increasing cAMP. Such signaling undergoes desensitization with continued agonist exposure. β₂AR also couple to G_i after receptor phosphorylation by the cAMP dependent protein kinase A, but the efficiency of such coupling is not known. Given the PKA dependence of β₂AR-G_i coupling, we explored whether this may be a mechanism of agonist-promoted desensitization. HEK293 cells were transfected to express β₂AR or β₂AR and G_iα2, and then treated with vehicle or the agonist isoproterenol to evoke agonist-promoted β₂AR desensitization. Membrane AC activities showed that G_iα2 overexpression decreased basal levels, but the fold-stimulation of the AC over basal by agonist was not altered. However, with treatment of the cells with isoproterenol prior to membrane preparation, a marked decrease in agonist-stimulated AC was observed with the cells overexpressing G_iα2. in the absence of such overexpression, β₂AR desensitization was 23 ± 7%, while with 5-fold G_iα2 overexpression desensitization was 58 ± 5% (p<0.01, n=4). the effect of G_i on desensitization was receptor-specific, in that forskolin responses were not altered by G_iα2 overexpression. Thus, acquired β₂AR coupling to G_i is an important mechanism of agonist-promoted desensitization, and pathologic conditions that increase G_i levels contribute to β₂AR dysfunction.     

Crystal structure of glycoside hydrolase family 78 alpha-L-Rhamnosidase from Bacillus sp. GL1

α-L-Rhamnosidase (EC 3.2.1.40) catalyzes the hydrolytic release of rhamnose from polysaccharides and glycosides. Bacillus sp. GL1 α-L-rhamnosidase (RhaB), a member of glycoside hydrolase (GH) family 78, is responsible for degrading the bacterial biofilm gellan, and also functions as a debittering agent for citrus fruit in the food and beverage industries through the release of rhamnose from plant glycoside, naringin. The X-ray crystal structure of RhaB was determined by single-wavelength anomalous diffraction using a selenomethionine derivative and refined at 1.9 Å resolution with a final R-factor of 18.2%. As is seen in the homodimeric form of the active enzyme, the structure of RhaB in crystal packing is a homodimer containing 1908 amino acids (residues 3-956), 43 glycerol molecules, four calcium ions, and 1755 water molecules. The overall structure consists of five domains, four of which are β-sandwich structures designated as domains N, D1, D2, and C, and an (α/α)₆-barrel structure designated as domain A. Structural comparison by DALI showed that RhaB shares its highest level of structural similarity with chitobiose phosphorylase (Z score of 25.3). The structure of RhaB in complex with the reaction product rhamnose (inhibitor constant, K_i = 1.8 mM) was also determined and refined at 2.1 Å with a final R-factor of 19.5%. Rhamnose is bound to the deep cleft of the (α/α)₆-barrel domain, as is seen in the clan-L GHs. Several negatively charged residues, such as Asp567, Glu572, Asp579, and Glu841, conserved in GH family 78 enzymes, interact with rhamnose, and RhaB mutants of these residues have drastically reduced enzyme activity, indicating that the residues are crucial for enzyme catalysis and/or substrate binding. To our knowledge, this is the first report on the determination of the crystal structure of α-L-rhamnosidase and identification of its clan-L (α/α)₆-barrel as a catalytic domain.     

Evidence for a single catalytic site on the "beta-D-glucosidase-beta-D-galactosidase" of almond emulsin.

An isoenzyme of glycosidase obtained from almond emulsin, which is both a β-d-glucosidase and a β-d-galactosidase, has now been shown to possess β-D-fucosidase activity. It has been concluded that all three activities reside in a single catalytic site for the following reasons. (i) d-Glucosylamine, d-galactosylamine, and d-fucosylamine (a newly discovered potent inhibitor of this enzyme) each act competitively against all three of the substrates. (ii) Any given inhibitor exhibits the same K_i value when tested in the presence of any of the three substrates, (iii) When the enzyme is incubated with any two of the p-nitrophenyl glycoside substrates, at or above their respective K_m values, the rate of p-nitrophenol formation is not additive, but rather is equal to the value calculated on the basis of the individual K_m values and relative maximum velocities.     

Tyrosyl-tRNA synthetase forms a mononucleotide-binding fold

Tyrosyl-tRNA synthetase from Bacillus stearothermophilus is a dimeric molecule of approximately 90,000 M_r. The crystal structure originally reported by Irwin et al. (1976) has been re-interpreted using a new density-modification technique. The reinterpretation is confirmed by the complete amino acid sequence (D. Barker & (G. Winter, personal communication). The structure consists of an amino-terminal $\text{α}\text{β}$ domain, a domain containing five α-helices, and a region of 99 amino acids at the carboxyl terminus, which appears to be disordered. The re-interpretation reveals two new α-helices in the $\text{α}\text{β}$ domain, and some changes in chain connections. The strands of the β-sheet are in the order A, F, E, B, C, D, with A antiparallel to the others. The arrangement of strands B to F is topologically identical to arrangements found in many other proteins, including the first five strands of the sheet in the NAD-binding domain of the dehydrogenases. Strands B, C, D form a mononucleotide-binding fold.In the complex with tyrosyl adenylate (Rubin & Blow, 1981), an intermediate in the reaction catalysed by the enzyme, the adenine lies near the carboxyl-terminal end of strand F of the β-sheet, with the ribose between the ends of strands B and E. This is similar to the nicotinamide position in dehydrogenases. The tyrosine moiety occupies a pocket at one side of the sheet, close to strands B and C. This tyrosine orientation is quite different from any part of the coenzyme in dehydrogenases. The ends of strands C and D of the sheet are buried, and binding of a nucleotide to the mononucleotide-binding fold formed by strands B, C, D would require a substantial structural change.     

Molecular topology in crystals and fibers of hemoglobin S

Several lines of evidence indicate a close correspondence between the linear double filaments in the crystal form of hemoglobin S grown from solutions containing polyethylene glycol and the seven pairs of helical filaments that occur in the 14-filament fibers of hemoglobin S. An analysis of the adjustments to the intermolecular contacts required to convert the double filaments from crystals to fibers is presented here. In addition, postulated contacts between the helical double filaments, which are distinct from any of the contacts of the crystals, are specified for the first time. The movements from crystals to fibers are described in terms of three rotation angles: α, the inclination of the filaments with respect to the fiber axis; δ, the tilt of successive molecules along the filaments; and ω, the rotation of successive molecules along the filaments. On the basis of the fiber structure determined by three-dimensional reconstruction of electron micrographs and the assignment of filament pairs from data on incomplete fibers, the various angles have been evaluated. For the filaments at various radii in the fibers, a varies from 3 ° to 12 °, δ varies from 1 ° to 4 ° and ω is constant at 9 °. The effects of the rotations on the contacts between molecules of hemoglobin S at various positions in the fibers are characterized using surface maps based on polar coordinates. For each residue on the surface of hemoglobin the centroid position of its side-chain is located by a longitude, a latitude and an altitude. Locations on the maps are assigned for the contacts within the helical double filaments, as well as 11 classes of new contacts describing the potential interaction sites between double filaments. The resulting maps (1) deduce roles for the various α mutants of hemoglobin known to influence fiber formation that have been identified by the Benesches; (2) distinguish effects for the α chain mutants on the same (cis) or opposite (trans) α₁β₁ dimer as the β6 Val in asymmetric tetramers; (3) propose new sites where effects of mutations on fiber formation may be found; and (4) suggest why some mutants may inhibit, while others enhance, fiber formation. Concerning the last point, the possibility of certain mutants “correcting” the effects of other mutants is proposed as a test of contact assignments.     

Dietary preference and feeding ecology of Bloch’s gizzard shad, <Emphasis Type="Italic">Nematalosa nasus</Emphasis>

Dietary preference and feeding ecology of Nematalosa nasus (Bloch 1795) in Chilika lagoon, India, was investigated through analysis of prey items in the guts and that in the habitat. Of the 230 taxa identified from the habitat in plankton samples from the lagoon, thirty five taxa were recorded from the guts of the fish. Index of Relative Importance showed 80% of the food comprised of microplankton groups viz. Foraminifera (35.79%), Chlorophyceae (20.52%), Bacillariophyaceae (12.30%), Cyanophyaceae (6.53%), other plant matter (3.65%) and Euglenophyaceae (0.76%). The fish is a generalized feeder on microplankton, with specialization on foraminiferans and Chlorophyaceae in Chilika Lagoon. Diet composition varied significantly with seasons. Prey type selectivity showed, preference to Gyrosigma sp. (α_i—0.98, e_i—0.85), Synedra sp. (α_i—0.47, e_i—0.71), Tabellaria sp. (α_i—0.58, e_i—0.47) and Ulothrix sp. (α_i—0.06, e_i—0.34) during monsoon and post-monsoonseason. Ammoniabeccarii (α_i—0.77 e_i—0.98), Campylodiscus sp. (α_i—0.04, e_i—0.17) and Microspora sp. (α_i—0.18, e_i—0.76), were selected during pre-monsoon period, which is also the peak breeding period of the fish.     

A scanning electron microscope technique for restoring deformed fossils

Deformed fossils which originally had a regular geometric outline, such as crinoid columnals, can be restored using a scanning electron microscope technique called tilt correction. This magnifies the specimen in one direction only. It is unsuitable for specimens where deformation has occurred unevenly and can also distort small structures while restoring the whole specimen. D Crinoid columnals, scanning electron microscope, tilt correction.