Enrichment and physiological characterization of an anaerobic ammonium-oxidizing bacterium ‘Candidatus Brocadia sapporoensis’

We successfully enriched a novel anaerobic ammonium-oxidizing (anammox) bacterium affiliated with the genus ‘Candidatus Brocadia’ with high purity (>90%) in a membrane bioreactor (MBR). The enriched bacterium was distantly related to the hitherto characterized ‘Ca. Brocadia fulgida’ and ‘Ca. Brocadia sinica’ with 96% and 93% of 16S ribosomal RNA gene sequence identity, respectively. The bacterium exhibited the common structural features of anammox bacteria and produced hydrazine in the presence of hydroxylamine under anoxic conditions. The temperature range of anammox activity was 20–45 °C with a maximum activity at 37 °C. The maximum specific growth rate (μ_max) was 0.0082 h^?1 at 37 °C, corresponding to a doubling time of 3.5 days. The half-saturation constant (K_S) for nitrite was 5 ± 2.5 μM. The anammox activity was inhibited by nitrite (IC₅₀ = 11.6 mM) but not by formate and acetate. The major respiratory quinone was identified to be menaquinone-7 (MK-7). The enriched anammox bacterium shared nearly half of genes with ‘Ca. Brocadia sinica’ and ‘Ca. Brocadia fulgida’. The enriched bacterium showed all known physiological characteristics of anammox bacteria and can be distinguished from the close relatives by its 16S rRNA gene sequence. Therefore, we proposed the name ‘Ca. Brocadia sapporoensis’ sp. nov.     

Spectroscopic parameters of the cuticle and ethanol extracts of the fluorescent cave isopod Mesoniscus graniger (Isopoda,Oniscidea)

The body surface of the terrestrial isopod Mesoniscus graniger (Frivaldsky, 1863) showed blue autofluorescence under UV light (330–385 nm), using epifluorescence microscopy and also in living individuals under a UV lamp with excitation light of 365 nm. Some morphological cuticular structures expressed a more intense autofluorescence than other body parts. For this reason, only the cuticle was analyzed. The parameters of autofluorescence were investigated using spectroscopic methods (molecular spectroscopy in infrared, ultraviolet-visible, fluorescence, and X-ray fluorescence spectroscopy) in samples of two subspecies of Mesoniscus graniger preserved in ethanol. Samples excited by UV light (from 350 to 380 nm) emitted blue light of wavelengths 419, 420, 441, 470 and 505 nm (solid phase) and 420, 435 and 463 (ethanol extract). The results showed that the autofluorescence observed from living individuals may be due to some β-carboline or coumarin derivatives, some crosslinking structures, dityrosine, or due to other compounds showing similar excitation-emission characteristics.     

Spectral microscopic imaging of heterocysts and vegetative cells in two filamentous cyanobacteria based on spontaneous Raman scattering and photoluminescence by 976 nm excitation

Photosynthetic pigment-protein complexes are highly concentrated in thylakoid membranes of chloroplasts and cyanobacteria that emit strong autofluorescence (mainly 600–800?nm). In Raman scattering microscopy that enables imaging of pigment concentrations of thylakoid membranes, near infrared laser excitation at 1064?nm or visible laser excitation at 488–532?nm has been often employed in order to avoid the autofluorescence. Here we explored a new approach to Raman imaging of thylakoid membranes by using excitation wavelength of 976?nm. Two types of differentiated cells, heterocysts and vegetative cells, in two diazotrophic filamentous cyanobacteria, Anabaena variabilis, and Rivularia M-261, were characterized. Relative Raman scattering intensities of phycobilisomes of the heterocyst in comparison with the nearest vegetative cells of Rivularia remained at a significantly higher level than those of A. variabilis. It was also found that the 976?nm excitation induces photoluminescence around 1017–1175?nm from the two cyanobacteria, green alga (Parachlorella kessleri) and plant (Arabidopsis thaliana). We propose that this photoluminescence can be used as an index of concentration of chlorophyll a that has relatively small Raman scattering cross-sections. The Rivularia heterocysts that we analyzed were clearly classified into at least two subgroups based on the Chla-associated photoluminescence and carotenoid Raman bands, indicating two physiologically distinct states in the development or aging of the terminal heterocyst.     

Biophysical properties of membrane lipids of anammox bacteria: II. Impact of temperature and bacteriohopanoids

Anammox bacteria possess unique membranes that are mainly comprised of phospholipids with extraordinary “ladderane” hydrocarbon chains containing 3 to 5 linearly concatenated cyclobutane moieties that have been postulated to form relatively impermeable membranes. In a previous study, we demonstrated that purified ladderane phospholipids form fluid-like mono- and bilayers that are tightly packed and relatively rigid. Here we studied the impact of temperature and the presence of bacteriohopanoids on the lipid density and acyl chain ordering in anammox membranes using Langmuir monolayer and fluorescence depolarization experiments on total lipid extracts. We showed that anammox membrane lipids of representatives of Candidatus “Kuenenia stuttgartiensis”, Candidatus “Brocadia fulgida” and Candidatus “Scalindua” were closely packed and formed membranes with a relatively high acyl chain ordering at the temperatures at which the cells were grown. Our findings suggest that bacteriohopanoids might play a role in maintaining the membrane fluidity in anammox cells.     

Fuchsin fluorescence and autofluorescence in Cryptosporidium, Isospora and Cyclospora oocysts

Cryptosporidium parvum and Isospora belli oocysts stained with carbol–fuchsin, as in a modified Ziehl–Neelsen technique, fluoresce bright red under green light (546 nm). Cryptosporidium oocysts tend to fluoresce more brightly the less intensely stained they appear under transmitted light; this is not the case with Isospora. Fuchsin-stained Cyclospora cayetanensis oocysts fluoresce rather dimly, but those not taking the dye retain their typical autofluorescence. Cryptosporidium and Isospora oocysts are also autofluorescent, appearing violet under u.v. light (365 nm), and green under violet (405 nm) and blue–violet light (436 nm). Their autofluorescence does not survive the staining procedure.     

sRNA‐FISH: versatile fluorescent in situ detection of small RNAs in plants

Localization of mRNA and small RNAs (sRNAs) is important for understanding their function. Fluorescent in situ hybridization (FISH) has been used extensively in animal systems to study the localization and expression of sRNAs. However, current methods for fluorescent in situ detection of sRNA in plant tissues are less developed. Here we report a protocol (sRNA‐FISH) for efficient fluorescent detection of sRNAs in plants. This protocol is suitable for application in diverse plant species and tissue types. The use of locked nucleic acid probes and antibodies conjugated with different fluorophores allows the detection of two sRNAs in the same sample. Using this method, we have successfully detected the co‐localization of miR2275 and a 24‐nucleotide phased small interfering RNA in maize anther tapetal and archesporial cells. We describe how to overcome the common problem of the wide range of autofluorescence in embedded plant tissue using linear spectral unmixing on a laser scanning confocal microscope. For highly autofluorescent samples, we show that multi‐photon fluorescence excitation microscopy can be used to separate the target sRNA‐FISH signal from background autofluorescence. In contrast to colorimetric in situ hybridization, sRNA‐FISH signals can be imaged using super‐resolution microscopy to examine the subcellular localization of sRNAs. We detected maize miR2275 by super‐resolution structured illumination microscopy and direct stochastic optical reconstruction microscopy. In this study, we describe how we overcame the challenges of adapting FISH for imaging in plant tissue and provide a step‐by‐step sRNA‐FISH protocol for studying sRNAs at the cellular and even subcellular level.     

A survey of autofluorescent patterns in the staminal connective base epidermis in 60 species of Asteraceae

All 60 Asteraceae species sampled, i.e., two species of Bamadesioideae, 21 species in six tribes in Cichorioideae, and 37 species in nine tribes of Asteroideae, show specific patterns of autofluorescence in abaxial connective base epidermal cells. Two species of Cichorioideae and 15 species of Asteroideae have autofluorescence in adaxial epidermal cells of the connective base. Several taxonomically useful features of the connective base are identified; they include shapes of autofluorescent cells, patterns of distribution of cells with autofluorescent walls, and patterns of distribution of autofluorescence in walls. Cellular features of many species coincide with recognized generic, tribal, and subtribal classifications. The results extend Cassini's characterization of the article anthérifere and indicate that the variable features of the connective bases of stamens of Asteraceae could contribute to phylogenetic understanding.     

Fluoreszenzmikroskopischer Nachweis des Schreckstoffes in den Schreckstoffzellen der Elritze,Phoxinus phoxinus (L.) (Cyprinidae,Ostariophysi, Pisces)

Zusammenfassung Die Schreckstoffzellen der Elritze,Phoxinus phoxinus (L.), zeigen nach Gefriertrocknung der Haut eine Eigenfluoreszenz. Diese wird bei 360–380 nm maximal angeregt; das Emissionsmaximum liegt bei ca. 515 nm. Die Fluoreszenz einer Schreckstoffzelle wird mit der Fluoreszenz des isolierten Schreckstoffes mikrospektralphotofluorimetrisch verglichen: die Emissions-maxima liegen nur 10 nm voneinander entfernt. Die Kurven relativer Fluoreszenzintensität verlaufen weitgehend gleichartig. Dies zeigt, daß der Schreckstoff tatsächlich den Schreckstoffzellen entstammt.

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Fluorescence microscopical demonstration of the alarm substance in the alarm substance cells of the European minnow,Phoxinus phoxinus (L.) (cyprinidae, ostariophysi, pisces)

Summary The alarm substance cells of the European minnow,Phoxinus phoxinus (L.), are autofluorescent after freeze-drying of the skin (Fig. 1). Their autofluorescence is maximally excited at 360–380 nm; the maximum of emission lies at about 515 nm. The fluorescence of an alarm substance cell is compared with the autofluorescence of the isolated alarm substance by means of a microspectro-photofluorometer. The maxima of emission are only about 10 nm apart. The curves of relative fluorescence intensity are almost identical (Fig. 3). These results show that the alarm substance actually comes from the alarm substance cells.

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Mit Unterstützung durch die Deutsche Forschungsgemeinschaft.     

Occurrence and evolutionary significance of RESISTANT CELL WALLS IN CHAROPHYTES AND BRYOPHYTES

A survey of charophycean green algal and bryophyte taxa revealed the frequent occurrence of vegetative cell walls that were characterized by a specific form of autofluorescence and resistance to high temperature acid treatment (acetolysis). The time of production and the location of resistant, autofluorescent cell walls varied among charophyte and bryophyte taxa in patterns that suggest that bryophytes inherited the capacity to produce such walls from charophyte ancestors. A number of charophytes produced resistant walls in response to desiccation stress, suggesting an evolutionarily early adaptive response. Coleochaete was unique among charophytes, but similar to all bryophytes tested in that sexual reproduction induced autofluorescence in cell walls of well-hydrated tissues at the placental junction. Maternal tissues in apical portions of the pseudoseta bearing Sphagnum sporophytes were characterized by autofluorescent, acetolysis-resistant cell walls similar to those observed in maternal cells adjacent to Coleochaete zygotes. These observations suggest that cell–cell stimulus–response interactions regulate deposition of autofluorescent compounds in placental cell walls, and that this characteristic may have been shared by the earliest embryophytes and their charophyte ancestors. Various bryophytes deposit autofluorescent, acid-resistant compounds at other adaptively significant sites including sporangial epidermis, spiral thickenings of elaters, rhizoids, and leaves in the special case of Sphagnum moss. Sphagnum and liverwort sporangial epidermis, which had been subjected to acetolysis or strong acid procedures commonly used to release microfossils from rock matrices, resembled published photographs of Ordovician–Devonian microfossils consisting of cellular scraps that have been attributed to earliest land plants. Our work suggests that at least some of these fossils, previously thought to represent “dispersed cuticles,” could be reinterpreted as earliest known remains of plant sporophytic tissues, and that they may be homologous with resistant sporangial epidermis of modern bryophytes. In general, the patterns of occurrence of resistant, autofluorescent cell walls in charophytes and bryophytes suggest repeated exaptation. Regulation of deposition appears to have been modified through time, so that resistant wall compounds have had a sequence of functions: desiccation resistance and/or microbial resistance in lower charophytes, a role in embryogenesis in Coleochaete and embryophytes, and finally, decay resistance in innovative structures that characterize bryophytes, such as rhizoids, sporangial epidermis, and elaters.     

THE CONNECTIVE BASE OF CIRSIUM HORRIDULUM (ASTERACEAE): DESCRIPTION AND COMPARISON WITH THE VISCOELASTIC FILAMENT

Structural, autofluorescent, and mechanical characteristics show that the so-called “collar” of the stamen is an elongated basal portion of the connective in Cirsium horridulum. The connective base/filament boundary is precisely demarcated by epidermal cells with thick, autofluorescent walls. In the region of the connective base near the anther lobes, the autofluorescence is less intense and the cells are longer, but wall thickness does not decrease. The autofluorescence can be assayed in fresh, frozen, or rehydrated materials, and is resistant to boiling in water and to acetone. Additional features delineate the connective base from the filament. The abaxial and lateral portions of the connective base surface are relatively flat due to the underlying thick secondary walls. Ultrathin sections taken at various points along the length of the connective base and the filament show that cuticle thickness gradually increases from approximately 30 nm in the connective base to 450 nm in the filament. The connective base/filament junction appears to be a weak mechanical link within the stamen. These data establish several new connective base characteristics in Cirsium and define the connective base/filament boundary.     

基于数据库分析不同类型生境中厌氧氨氧化细菌的多样性分布特征

【目的】厌氧氨氧化过程是一种能在厌氧条件下氧化NH4+同时还原NO2–或者NO3–生成N2的过程,是氮素循环过程的重要途径之一。厌氧氨氧化过程由厌氧氨氧化细菌催化完成,目前通过分子生物学的手段已证实了厌氧氨氧化细菌存在于多种类型的生境中,本文对厌氧氨氧化细菌在不同类型生境中的多样性分布规律进行了系统分析。【方法】基于NCBI数据库中厌氧氨氧化细菌的16SrRNA基因序列,利用Mothur分析平台系统分析了厌氧氨氧化细菌在不同生境中的多样性分布规律和特征。【结果】分析表明,海洋环境中Ca. Scalindua属的厌氧氨氧化细菌占绝对主导;淡水和农业土壤中Ca. Brocadia属的厌氧氨氧化细菌占优势;工程系统中普遍存在Ca. Brocadia和Ca. Kuenenia属的厌氧氨氧化细菌;而湿地和河口环境中厌氧氨氧化细菌多样性最高,Ca. Scalindua、Ca. Brocadia和Ca. Kuenenia属的厌氧氨氧化细菌均有较高的相对丰度,显示出了陆地与海洋交汇的显著特征。【结论】本研究系统展示了不同的生境中厌氧氨氧化细菌的多样性群落结构生境分布特征,表明环境特征差异直接影响了厌氧氨氧化细菌的种群分布和系统演化。     

Nitrogen removal via simultaneous partial nitrification,anammox and denitrification (SNAD) process under high DO condition

The simultaneous partial nitrification, anammox and denitrification (SNAD) process for treating domestic wastewater was investigated in a sequencing batch reactor (SBR). The SBR was operated with air flow rate of 500 L h^?1 at 30 °C. Domestic wastewater was used as influent and Kaldnes rings were used as biomass carriers. In the beginning, long aeration condition was implemented to cultivate nitrification biofilm. Afterwards, intermittent aerobic condition was conducted during the cycle operation. The influent organic matter loading rate was improved by reducing the aeration and mixing times. Consequently, when the SNAD biofilm reactor was fed with the organic matter loading rate of 0.77 (kg COD m^?3 d^?1), the bio-bubbles appeared in the reactor and the total inorganic nitrogen (TIN) removal efficiency decreased. After the organic matter loading rate decreased to 0.67 (kg COD m^?3 d^?1), the reactor showed excellent nitrogen removal performance. The TIN removal efficiency varied between 80 and 90 %, and the average TIN removal loading rate was 0.22 (kg TIN m^?3 d^?1). Additionally, the scanning electron microscope (SEM) observation confirmed that the anammox bacteria located in the inner part of the carriers. Finally, the microbial community analysis of 16S rRNA gene cloning revealed that the anammox bacteria on the carriers consisted of three main genuses: Candidatus Brocadia sp., Candidatus Brocadia caroliniensis and Candidatus Brocadia fulgida.     

Isolation of autofluorescent ‘aged’ human fibroblasts by flow sorting : Morphology, enzyme activity and proliferative capacity

In cultures of human fibroblasts the percentage of bright autofluorescent (AF) cells increases with increasing passage number. These autofluorescent cells were isolated using a FACS II cell sorter and compared with sorted non-fluorescent (NF) cells. The AF cells showed an increase in population doubling time (2.3-fold), cell protein (1.9-fold), and in specific activities of the lysosomal enzymes: β-hexosaminidase (4.2-fold), β-galactosidase (3.8-fold) and acid phosphatase (2.5-fold). The specific activities of two non-lysosomal enzymes glucose-6-phosphate dehydrogenase and lactate dehydrogenase had increased only slightly (1.1-fold) respectively (1.5-fold).The autofluorescence in the AF cells was restricted to small round organelles. The distribution and size of these autofluorescence granules were similar to the acid phosphatase-containing granules in the cytochemically stained cells. Electronmicroscopical examination showed that these AF cells contained a large amount of small electron-dense granules containing amorphosmophilic material. These granules which were positive for the acid phosphatase reaction, were classified as secondary lysosomes. The low percentage of the sorted AF cells which incorporate [³H]thymidine during a 24 h test period (19%) as compared with the labelling percentage of sorted NF cells (73%) from the same culture, indicate that the autofluorescent cells in a ‘young’ culture have a very limited remaining proliferative capacity. The results imply, that by flow sorting it is possible to isolate ‘aged’ cells with characteristics of ‘phase III’ cells out of non-aged fibroblast cultures.     

Multicolour flow cytometry analyses and autofluorescence in chlorophytes: lessons from programmed cell death studies in Chlamydomonas reinhardtii

Flow cytometry is a valuable tool in phycological studies. However, endogenous cellular compounds like nicotinamide adenine dinucleotide and chlorophyll a and b autofluoresce, potentially interfering with fluorescent markers. Furthermore, autofluorescent properties are not uniform across algae, nor are their effects consistent in different cytometers. The choice of instrument and fluorescent marker, therefore, requires careful consideration. We investigated the suitability of fluorescent markers by using standard four-colour and advanced multicolour flow cytometers in relation to the effects of autofluorescence over ranges of parameters including fluorophore excitation and emission spectra, band-pass filter configurations, voltage gains and the effects of growth in the light and dark. The unicellular chlorophyte and model organism, Chlamydomonas reinhardtii, was used and findings were correlated with investigations of programmed cell death. As previously found C. reinhardtii autofluoresces in the red, far-red and infrared spectra. This is independent of laser excitation wavelength, and autofluorescence emits and spills over into detection channels of both four-colour and multicolour instruments. Band-pass filter configurations capturing longer wavelength emissions or fluorophores excited or emitted in these longer wavelengths are generally unsuitable. Furthermore, neither dark nor light incubation impacted the autofluorescent signals. Consideration of these algal autofluorescent properties and their spillover effects is required to avoid erroneous results. Recommendations for the use of a range of fluorophores in programmed cell death and other studies in C. reinhardtii using four-colour and multicolour instruments are made.     

Pacing rate, halothane, and BDM affect fura 2reporting of [Ca2+]i in intact rat trabeculae

Experiments weredone on intact trabeculae from rats. Fura 2 in the salt form wasmicroinjected directly into the myoplasm. The experiments wereconducted at 30°C, with 2 mM extracellular Ca²⁺ concentrationand pacing at either 0.5 or 5 Hz. The aims were to establish a newmethod for in vivo calibration of fura 2 and to determine the effect ofautofluorescence changes on intracellular Ca²⁺ concentration([Ca²⁺]_i)reported by fura 2. Autofluorescence was recorded under optimal conditions for fura 2 fluorescence (emission at 510 nm). By alteration of the oxidation-reduction state, it was shown that NADH is the maincomponent of autofluorescence in heart. An increase in pacing frequencycaused a decrease in autofluorescence. Both halothane and2,3-butanedione monoxime (BDM) at 5-Hz pacing produced a substantial rise in autofluorescence, approaching the levels observed at 0.5-Hz pacing. The values for the dissociation constant (678 nM) and maximumfluorescence ratio of fura 2 forCa²⁺ for the in vivo calibrationare 3.4 times larger and 2.6 times smaller, respectively, than thosefound in vitro. Using the parameters obtained in vivo, we found thatthe diastolic and systolic[Ca²⁺]_iof a twitch at 30°C were 0.2 and 2.4 µM, respectively. Proper correction of the autofluorescence change unmasks the[Ca²⁺]_ielevation caused by 5-Hz pacing. It was concluded that autofluorescence is not constant and that interventions affecting autofluorescence needcorrection if fura 2 is used to report[Ca²⁺]_i.

     

Potent functional uncoupling between STIM1 and Orai1 by dimeric 2-aminodiphenyl borinate analogs

The coupling of ER Ca²⁺-sensing STIM proteins and PM Orai Ca²⁺ entry channels generates “store-operated” Ca²⁺ signals crucial in controlling responses in many cell types. The dimeric derivative of 2-aminoethoxydiphenyl borinate (2-APB), DPB162-AE, blocks functional coupling between STIM1 and Orai1 with an IC₅₀ (200 nM) 100-fold lower than 2-APB. Unlike 2-APB, DPB162-AE does not affect L-type or TRPC channels or Ca²⁺ pumps at maximal STIM1–Orai1 blocking levels. DPB162-AE blocks STIM1-induced Orai1 or Orai2, but does not block Orai3 or STIM2-mediated effects. We narrowed the DPB162-AE site of action to the STIM–Orai activating region (SOAR) of STIM1. DPB162-AE does not prevent the SOAR–Orai1 interaction but potently blocks SOAR-mediated Orai1 channel activation, yet its action is not as an Orai1 channel pore blocker. Using the SOAR-F394H mutant which prevents both physical and functional coupling to Orai1, we reveal DPB162-AE rapidly restores SOAR–Orai binding but only slowly restores Orai1 channel-mediated Ca²⁺ entry. With the same SOAR mutant, 2-APB induces rapid physical and functional coupling to Orai1, but channel activation is transient. We infer that the actions of both 2-APB and DPB162-AE are directed toward the STIM1–Orai1 coupling interface. Compared to 2-APB, DPB162-AE is a much more potent and specific STIM1/Orai1 functional uncoupler. DPB162-AE provides an important pharmacological tool and a useful mechanistic probe for the function and coupling between STIM1 and Orai1 channels.     

Bacteriophage P1 Ban protein is a hexameric DNA helicase that interacts with and substitutes for Escherichia coli DnaB

Since the ban gene of bacteriophage P1 suppresses a number of conditionally lethal dnaB mutations in Escherichia coli, it was assumed that Ban protein is a DNA helicase (DnaB analogue) that can substitute for DnaB in the host replication machinery. We isolated and sequenced the ban gene, purified the product, and analysed the function of Ban protein in vitro and in vivo. Ban hydrolyses ATP, unwinds DNA and forms hexamers in the presence of ATP and magnesium ions. Since all existing conditionally lethal dnaB strains bear DnaB proteins that may interfere with the protein under study, we constructed a dnaB null strain by using a genetic set-up designed to provoke the conditional loss of the entire dnaB gene from E.coli cells. This novel tool was used to show that Ban restores the viability of cells that completely lack DnaB at 30°C, but not at 42°C. Surprisingly, growth was restored by the dnaB252 mutation at a temperature that is restrictive for ban and dnaB252 taken separately. This indicates that Ban and DnaB are able to interact in vivo. Complementary to these results, we demonstrate the formation of DnaB–Ban hetero-oligomers in vitro by ion exchange chromatography. We discuss the interaction of bacterial proteins and their phage-encoded analogues to fulfil functions that are essential to phage and host growth.     

Measuring mitochondrial and cytoplasmic Ca2+ in EGFP expressing cells with a low-affinity Calcium Ruby and its dextran conjugate

The limited choice and poor performance of red-emitting calcium (Ca²⁺) indicators have hampered microfluorometric measurements of the intracellular free Ca²⁺ concentration in cells expressing yellow- or green-fluorescent protein constructs. A long-wavelength Ca²⁺ indicator would also permit a better discrimination against cellular autofluorescence than the commonly used fluorescein-based probes. Here, we report an improved synthesis and characterization of Calcium Ruby, a red-emitting probe consisting of an extended rhodamine chromophore (578/602 nm peak excitation/emission) conjugated to BAPTA and having an additional NH₂ linker arm. The low-affinity variant (K_D,Ca ～30 μM) with a chloride in meta position that was specifically designed for the detection of large and rapid Ca²⁺ transients. While Calcium Ruby is a mitochondrial Ca²⁺probe, its conjugation, via the NH₂ tail, to a 10,000 MW dextran abolishes the sub-cellular compartmentalization and generates a cytosolic Ca²⁺ probe with an affinity matched to microdomain Ca²⁺ signals. As an example, we show depolarization-evoked Ca²⁺ signals triggering the exocytosis of individual chromaffin granules. Calcium Ruby should be of use in a wide range of applications involving dual- or triple labeling schemes or targeted sub-cellular Ca²⁺ measurements.