Age and growth and maturity of southern Africa's largest cyprinid fish, the largemouth yellowfish Labeobarbus kimberleyensis

The aim of this study was to use specimens of the largemouth yellowfish Labeobarbus kimberleyensis, southern Africa's largest cyprinid [IUCN red-listed as Near Threatened (NT)], obtained from gillnet by-catch to describe aspects of its biology in order to assist future conservation and management decisions. Ninety three L. kimberleyensis were collected between March 2007 and May 2008 from Lake Gariep, South Africa. Labeobarbus kimberleyensis was present in 38% of all gillnet catches, but in low numbers (2% of the catch) and it contributed 8% to the catch by mass. Age was estimated using astericus otoliths. Growth increment formation on these otoliths was validated as annual using edge analysis and the mark-recapture of chemically tagged captive fish. Resultant analysis showed that the species is slow growing and the oldest aged fish was a 17 year, 690 mm fork length (L(F) ) male. The smallest ripe female fish measured 394 mm L(F) and was 7+ years old and the smallest mature male was 337 mm L(F) and 5+ years old. Slow growth and late maturity make this species vulnerable to exploitation emphasizing the need for continued high conservation priority.     

Genetically distinct Dutch-domesticated Clarias gariepinus used in aquaculture in southern Africa

Clarias gariepinus, a catfish species widely distributed in Africa including South Africa, is naturally absent from the Western Cape and the coastal Eastern Cape provinces. Because of its potential as an aquaculture species it has been widely used in aquaculture ventures in South Africa, specifically a stock known as Dutch catfish, a domesticated strain developed in the Netherlands. Mitochondrial DNA markers indicate that this stock is genetically distinct from the natural populations of C. gariepinus in South Africa. It could potentially pose a threat to South Africa's natural biodiversity if these fish were to escape from aquaculture farms, or was deliberately introduced into inland waters.     

Ichthyofaunal assemblages in estuaries: A South African case study

This review places the life-history styles of fishes associated with South African estuaries in a global context and presents a classification system incorporating all the major life-history categories for estuary-associated fish species around the world. In addition, it documents the early life histories of the major fish groups in South African estuaries, with particular emphasis on the differing modes of estuarine utilization by marine, estuarine and freshwater taxa.This review details factors influencing the ichthyofaunal community structure in South African estuaries. The availability of fish for recruitment into an estuary depends primarily upon the distributional range of euryhaline marine and estuarine species, with tropical and temperate taxa showing marked abundance trends. Within a particular biogeographic region, however, estuarine type and prevailing salinity regime have a major influence on the detailed ichthyofaunal structure that develops. There is an increasing preponderance of marine fish taxa when moving from a freshwater-dominated towards a seawater-dominated type of system, and a decline in species diversity between subtropical estuaries in the north-east and cool temperate systems in the south-west. Similar declines in fish species diversity between tropical and temperate estuaries in other parts of the world are highlighted.Fish assemblages in estuaries adjust constantly in response to changing seasons, salinities, turbidities, etc. Despite persistent fluctuations in both the biotic and abiotic environment, the basic ichthyofaunal structure appears to have an underlying stability and to be predictable in terms of the response of individual species to specific conditions. This stability seems to be governed by factors such as the dominance of eurytopic taxa within estuarine assemblages and the robust nature of food webs within these systems. The predictability arises from factors such as the seasonality associated with estuarine spawning cycles and juvenile fish recruitment patterns. These patterns, together with a well-documented resilience to a wide range of physico-chemical and biotic perturbations, appear to be an underlying feature of fish assemblages in estuaries around the world.In contrast to marine fish species, estuary-associated taxa have received little conservation attention. Apart from the designation of protected areas, the main direct means of conserving estuary-associated fish stocks include habitat conservation and controls over fishing methods, effort, efficiency and seasonality. Of these, the conservation of fish habitats, the most important, because healthy aquatic environments invariably support healthy fish populations. The use of estuarine sanctuaries for fish conservation is briefly reviewed, as well as the legislation governing the USA National Estuarine Research Reserve System (NERRS) and the Australian Marine and Estuarine Protected Area (MEPA) system. It is concluded that South Africa requires an expansion of the existing Estuarine Protected Area (EPA) network, as well as the upgrading of selected 'estuarine reserves' where fishing is permitted, into 'estuarine sanctuaries' where no exploitation of biological resources is allowed.     

A new species of Trichodina (Ciliophora: Peritrichia) from the intestine of the surgeonfish Acanthurus xanthopterus

A population of a trichodinid (Ciliophora: Peritrichia) was found in the gut of the surgeonfish Acanthurus xanthopterus collected from Hawaii, South Africa and New Guinea and described as a new species. This is only the second record of a trichodinid from the intestine of a marine fish. In all the fish specimens examined, the micro-fauna normally found in other species of the fish family. Acanthuridae was absent and replaced entirely by the trichodinid population.     

Assessment of fish communities using environmental DNA: Effect of spatial sampling design in lentic systems of different sizes

Freshwater fish biodiversity is quickly decreasing and requires effective monitoring and conservation. Environmental DNA (eDNA)‐based methods have been shown to be highly sensitive and cost‐efficient for aquatic biodiversity surveys, but few studies have systematically investigated how spatial sampling design affects eDNA‐detected fish communities across lentic systems of different sizes. We compared the spatial patterns of fish diversity determined using eDNA in three lakes of small (SL; 3 ha), medium (ML; 122 ha) and large (LL; 4,343 ha) size using a spatially explicit grid sampling method. A total of 100 water samples (including nine, 17 and 18 shoreline samples and six, 14 and 36 interior samples from SL, ML and LL, respectively) were collected, and fish communities were analysed using eDNA metabarcoding of the mitochondrial 12S region. Together, 30, 35 and 41 fish taxa were detected in samples from SL, ML, and LL, respectively. We observed that eDNA from shoreline samples effectively captured the majority of the fish diversity of entire waterbodies, and pooled samples recovered fewer species than individually processed samples. Significant spatial autocorrelations between fish communities within 250 m and 2 km of each other were detected in ML and LL, respectively. Additionally, the relative sequence abundances of many fish species exhibited spatial distribution patterns that correlated with their typical habitat occupation. Overall, our results support the validity of a shoreline sampling strategy for eDNA‐based fish community surveys in lentic systems but also suggest that a spatially comprehensive sampling design can reveal finer distribution patterns of individual species.     

Marine Biodiversity in South Africa: An Evaluation of Current States of Knowledge

Continental South Africa has a coastline of some 3,650 km and an Exclusive Economic Zone (EEZ) of just over 1 million km². Waters in the EEZ extend to a depth of 5,700 m, with more than 65% deeper than 2,000 m. Despite its status as a developing nation, South Africa has a relatively strong history of marine taxonomic research and maintains comprehensive and well-curated museum collections totaling over 291,000 records. Over 3 million locality records from more than 23,000 species have been lodged in the regional AfrOBIS (African Ocean Biogeographic Information System) data center (which stores data from a wider African region). A large number of regional guides to the marine fauna and flora are also available and are listed.The currently recorded marine biota of South Africa numbers at least 12,914 species, although many taxa, particularly those of small body size, remain poorly documented. The coastal zone is relatively well sampled with some 2,500 samples of benthic invertebrate communities have been taken by grab, dredge, or trawl. Almost none of these samples, however, were collected after 1980, and over 99% of existing samples are from depths shallower than 1,000 m—indeed 83% are from less than 100 m. The abyssal zone thus remains almost completely unexplored.South Africa has a fairly large industrial fishing industry, of which the largest fisheries are the pelagic (pilchard and anchovy) and demersal (hake) sectors, both focused on the west and south coasts. The east coast has fewer, smaller commercial fisheries, but a high coastal population density, resulting in intense exploitation of inshore resources by recreational and subsistence fishers, and this has resulted in the overexploitation of many coastal fish and invertebrate stocks. South Africa has a small aquaculture industry rearing mussels, oysters, prawns, and abalone—the latter two in land-based facilities.Compared with many other developing countries, South Africa has a well-conserved coastline, 23% of which is under formal protection, however deeper waters are almost entirely excluded from conservation areas. Marine pollution is confined mainly to the densely populated KwaZulu-Natal coast and the urban centers of Cape Town and Port Elizabeth. Over 120 introduced or cryptogenic marine species have been recorded, but most of these are confined to the few harbors and sheltered sites along the coast.     

Histological studies to evaluate gonad development in Barbus neefi (Cyprinidae), the sidespot barb,from South Africa

Barbus neefi gonads were collected seasonally from specimens from the Selati and Makutsi Rivers, tributaries of the Olifants River in Limpopo and Mpumalanga provinces, South Africa, preserved in 4% formalin solution and stained with hematoxilin/eosin. These collections represent new records for this species in these rivers. Mature eggs and sperm were found to occur throughout the year in most individuals (SL 22.7–67.2mm), as occurs in other cool water species. One individual was hermaphrodite.     

Length–weight and length–length relationships of fish species from the Aegean Sea (Greece)

We present the relationships between total (TL), fork (FL) and standard (SL) length for 37 fish species and the relationships between TL and wet weight for 40 fish species from the Aegean Sea (Cyclades; Greece). The relationships between TL, FL and SL were all linear (for all cases: r ² > 0.928). The values of the exponent b of the length–weight relationships ranged from 2.235 to 3.704.     

Findings of Andriashevs eel cod <Emphasis Type="Italic">Muraenolepis andriashevi</Emphasis> (Gadiformes: Muraenolepididae) at Discovery Seamount (South Atlantic)

Findings of a rare fish, Andriashevs eel cod Muraenolepis andriashevi Balushkin et Prirodina, 2005 (Muraenolepididae), from Discovery Seamount (South Atlantic) are described. The new findings extend the geographical distribution area and the range of morphological variability of this species previously known only from two type-specimens from the Agulhas Bank (South Africa).     

Evaluation of the 16S and 12S rRNA genes as universal markers for the identification of commercial fish species in South Africa

The development of DNA-based methods for the identification of fish species is important for fisheries research and control, as well as for the detection of unintentional or fraudulent species substitutions in the marketplace. The aim of this study was to generate a comprehensive reference database of DNA sequences from the mitochondrial 16S and 12S ribosomal RNA (rRNA) genes for 53 commercial fish species in South Africa and to evaluate the applicability of these genetic markers for the identification of fish at the species level. The DNA extracted from all target species was readily amplified using universal primers targeting both rRNA gene regions. Sequences from the 16S and 12S rRNA genes were submitted to GenBank for the first time for 34% and 53% of the fish species, respectively. Cumulative analysis of the 16S rRNA gene sequences revealed mean conspecific, congeneric and confamilial Kimura two parameter (K2P) distances of 0.03%, 0.70% and 5.10% and the corresponding values at the 12S level were 0.03%, 1.00% and 5.57%. K2P neighbour-joining trees based on both sequence datasets generally clustered species in accordance with their taxonomic classifications. The nucleotide variation in both the 16S and 12S sequences was suitable for identifying the large majority of the examined fish specimens to at least the level of genus, but was found to be less useful for the explicit differentiation of certain congeneric fish species. It is recommended that one or more faster-evolving DNA regions be analysed to confirm the identities of closely-related fish species in South Africa.     

Reproductive and feeding biology of the Natal mountain catfish, Amphilius natalensis (Siluriformes: Amphiliidae)

Aspects of the biology of the Natal mountain catfish, Amphilius natalensis, including gametogenesis, spawning season, size-at-maturity, sex ratio, diet and feeding morphology were determined from fish collected in the Songimvelo Game Reserve, South Africa, between 1989 and 1990. Female sexual maturity was established at 63 mm total length. A. natalensis is an asynchronous, iteroparous spawner, breeding throughout summer from August to February. Sex ratio of females to males was 2.2:1, with females attaining a significantly larger size than males. Gametogenesis followed a pattern similar to that of other freshwater teleosts peaking over the spawning period. Stomach content analysis and observations on feeding morphology revealed that A. natalensis was an opportunistic predator with large fish consuming larger prey from a greater variety of taxonomic groups. The most abundant prey items eaten were dipteran (particularly Chironomidae) and ephemeropteran (particularly Baetidae) larvae.     

Establishment of a mitochondrial DNA sequence database for the identification of fish species commercially available in South Africa

The limitations intrinsic to morphology-based identification systems have created an urgent need for reliable genetic methods that enable the unequivocal recognition of fish species, particularly those that are prone to overexploitation and/or market substitution. The aim of this study was to develop a comprehensive reference library of DNA sequence data to allow the explicit identification of 53 commercially available fish species in South Africa, most of which were locally caught marine species. Sequences of approximately 655 base pairs were generated for all species from the cytochrome c oxidase I (COI) gene, the region widely adopted for DNA barcoding. Specimens of the genus Thunnus were examined in further detail, employing additional mitochondrial DNA control region sequencing. Cumulative analysis of the sequences from the COI region revealed mean conspecific, congeneric and confamilial Kimura 2-parameter distances of 0.10%, 4.58% and 15.43%, respectively. The results showed that the vast majority (98%) of fish species examined could be readily differentiated by their COI barcodes, but that supplementary control region sequencing was more useful for the discrimination of three Thunnus species. Additionally, the analysis of COI data raised the prospect that Thyrsites atun (snoek) could constitute a species pair. The present study has established the necessary genetic information to permit the unambiguous identification of 53 commonly marketed fish species in South Africa, the applications of which hold a plethora of benefits relating to ecology research, fisheries management and control of commercial practices.     

Using Tournament Angler Data to Rapidly Assess the Invasion Status of Alien Sport Fishes (Micropterus spp.) in Southern Africa

Fishes are one of the most commonly introduced aquatic taxa worldwide, and invasive fish species pose threats to biodiversity and ecosystem function in recipient waters. Considerable research efforts have focused on predicting the invasibility of different fish taxa; however, accurate records detailing the establishment and spread of invasive fishes are lacking for large numbers of fish around the globe. In response to these data limitations, a low-cost method of cataloging and quantifying the temporal and spatial status of fish invasions was explored. Specifically, angler catch data derived from competitive bass angling tournaments was used to document the distribution of 66 non-native populations of black bass (Micropterus spp.) in southern Africa. Additionally, catch data from standardized tournament events were used to assess the abundance and growth of non-native bass populations in southern Africa relative to their native distribution (southern and eastern United States). Differences in metrics of catch per unit effort (average number of fish retained per angler per day), daily bag weights (the average weight of fish retained per angler), and average fish weight were assessed using catch data from 14,890 angler days of tournament fishing (11,045 days from South Africa and Zimbabwe; 3,845 days from the United States). No significant differences were found between catch rates, average daily bag weight, or the average fish weight between countries, suggesting that bass populations in southern Africa reach comparable sizes and numbers relative to waters in their native distribution. Given the minimal cost associated with data collection (i.e. records are collected by tournament organizers), the standardized nature of the events, and consistent bias (i.e. selection for the biggest fish in a population), the use of angler catch data represents a novel approach to infer the status and distribution of invasive sport fish.     

Threatened fishes of the world: Brycon nattereri Günther, 1864 (Characidae)

Brycon nattereri (Ostariophysi: Characiformes: Characidae), a threatened South American freshwater fish, occurs in the Paraná, Tocantins and São Francisco river basins in central Brazil. It is a middle-sized (up to 50 cm SL), omnivorous species, which occurs in swift, clear-water rivers with well-preserved riparian vegetation. Main threats to the species are water pollution, dam building, and deforestation.     

Fish by‐catch in shrimp beam trawls in the northern South China Sea

The by‐catch of shrimp beam trawl fisheries in the northern South China Sea were estimated during the 2005–2006 and 2012–2013 fishing seasons. A total of 98 hauls from three important shrimp fishing grounds were used in the analyses. A total of 119 by‐catch species were captured, compared with only 15 target species. The ratio of by‐catch to shrimp ranged from 1.01 to 13.90. The dominant standard length (SL) range of fish by‐catch was 51–100 mm. The percentage of juveniles in the total catch of some fish species was high (e.g. 100% for A. aneus).     

4. BIRD PROTECTION POLICIES AND LAWS

Walter, C. B., Cooper, J. &; Suter, W. 1987. Diet of Swift Tern chicks in the Saldanha Bay region, South Africa. Ostrich 58:49-53.

The diet of the Swift Tern Sterna bergii was investigated over a ten-year period off the west coast of South Africa by collecting regurgitations from chicks during ringing operations. A total of 1311 prey items of 25 identifiable species (20 of which were fish) was collected. Fish formed 86% of all the prey items. Other prey species included cephalopods, crustaceans and insects. 60% by number of prey taken consisted of pelagic shoaling fish, of which Cape Anchovy Engraulis japonicus occurred most frequently and was the most abundant prey species in seven of the nine years in which samples were collected. Weekly collections in 1984 confirmed that pelagic shoaling fish, in particular Cape Anchovy, were the most abundant prey taken during the chick-rearing period. Prey size varied from 7 to 138 mm in length and from 0,l to 30,0 g in mass.     

Size-related mortality due to gnathiid isopod micropredation correlates with settlement size in coral reef fishes

The transition between the planktonic and the benthic habitat is a critical period for the larvae of many demersal marine organisms. Understanding the potential constraints on the timing of this habitat transition, called settlement, is important to understanding their biology. Size-specific mortality can set the limits on lifestyle and help explain ontogenetic habitat shifts. We examined whether size-based mortality risks after settlement may include micropredation by ectoparasites by testing whether survival of settlement-stage fish varies with fish size when exposed to a reef-associated micropredator. Fish (14 species) were exposed to one blood-sucking gnathiid isopod overnight, with appropriate controls; gnathiid feeding success and survival, and fish mortality were recorded relative to fish size. After adjusting for fish relatedness, we found the relationship between fish mortality and size differed with gnathiid exposure: for gnathiid-exposed fish, the mean mortality of the smallest fish was much higher (57%) than unexposed controls (10%), and decreased to ~0% for fish >12 mm standard length (SL); mortality was almost nil in controls. Thus, a predicted optimal size to switch habitat and reduce mortality risk from micropredation should be >12 mm SL. We then asked what species might be at greater risk and if the steep increase in survival at ~12 mm SL might coincide with settlement at larger sizes among fishes. Across 102 other species (32 families), 61% settled at ≥12 mm SL. After adjusting for relatedness, mean fish settlement size was 15.0 mm and this was not significantly different from 12 mm. Thus, settlement size clusters around the minimum fish size threshold our gnathiid experiment predicted would be large enough to survive a gnathiid encounter. These results suggest micropredators may contribute to size-selective mortality during settlement processes and are consistent with the hypothesis that the pelagic phase provides fish an escape from certain micropredators.     

Convergence of temperate and tropical stream fish assemblages

The hypothesis of convergence takes the deterministic view that community (or assemblage) structure can be predicted from the environment, and that the environment is expected to drive evolution in a predictable direction. Here we present results of a comparative study of freshwater fish assemblages from headwater streams in four continents (Europe, North America, Africa and South America), with the general objective of testing whether these assemblages display convergent structures under comparable environmental conditions (i.e. assemblage position in the stream longitudinal continuum). We tested this hypothesis by comparing species richness and trophic guilds of those stream fish assemblages represented in available data from multiple sites on each continent. Independent of phylogenetic and historical constraints, fish assemblage richness and trophic structure in the four continents converged along the stream continua to a substantial degree. For the four continents, assemblage richness increased, the proportion of invertivorous species decreased, and the proportion of omnivorous species increased from upstream to downstream, supporting theoretical predictions of the river continuum concept. However, the herbivore/detritivore and piscivore guilds were virtually absent from our small European and North American stream sites, unlike our African and South American stream sites. This divergence can be linked to differences in energy availability between temperate and tropical systems.     

Mitochondrial DNA analyses of the Cape hakes reveal an expanding, panmictic population for Merluccius capensis and population structuring for mature fish in Merluccius paradoxus

The Cape hake species, Merluccius capensis and Merluccius paradoxus are the most important resource of the South African and Namibian demersal fishery, but it is unclear whether there is a single population of each shared by both countries. We analysed the population structure and evolutionary history of these two species using the variable 5' region of the mtDNA control region for 311 specimens of M. capensis and 333 specimens of M. paradoxus sampled between Lüderitz (southern Namibia) to south of Cape Point (South Africa). 107 haplotypes for M. capensis and eight haplotypes for M. paradoxus were recovered. AMOVA and pairwise Phi(st) analyses revealed no structure in M. capensis, however significant genetic differentiation between Namibian and South African 'populations' was detected for M. paradoxus. This was only restricted to mature fish older than 3 and 4 years and not for juvenile fish younger than 3 years. Analyses reveal that M. capensis has undergone population expansion (Fu's Fs=-26.65, P<0.001), possibly within the last 4500-23,000 years, whereas M. paradoxus has not. Our study highlights the utility of genetic markers to unravel the evolutionary history of sympatric species, as well as addressing management issues within regions where commercially valuable fish stocks are shared between nations.