Determining the location of a deceased mother tree and estimating forest regeneration variables by use of microsatellites and spatial genetic models

In this paper we first mathematically formulate spatial genetic models that rely on dispersal kernels, using the genetic inhomogeneous Poisson process. On the basis of mapped and genotyped data pertaining to adult and juvenile trees we are able to estimate three fundamental variables of population dynamics: individual female reproductive success, seed dispersal, and pollen flow. The model was applied to a secondary Fagus crenata stand in northern Japan, regenerated after shelterwood harvesting. Highly polymorphic microsatellite data revealed that most of the juveniles around one adult tree were not that tree’s progeny and that some minor alleles were clustered there. These data suggested that another mother tree had formerly been present in the vicinity, produced offspring there and died. Inferring its genotype and location, we applied the genetic inhomogeneous Poisson process. Results confirmed that we would have wrongly assessed the regeneration if we had been unaware of the existence of the dead mother. The average distances for seed dispersal and pollen flow were 18 and 193 m, respectively. The contribution of outside mothers, simultaneously assessed using the dispersal variables in the models, ranged from 10 to 50% depending on their positions relative to preserved adults. Individual female reproductive success varied as much as fiftyfold among the eight preserved adults. Our comprehensive approach, utilizing currently available genetic information, mathematical models, and previous forestry records, helped elucidation of the past forest-regeneration processes.     

Spatially explicit neutral models for population genetics and community ecology: Extensions of the Neyman-Scott clustering process

Spatially explicit models relating to plant populations have developed little since Felsenstein (1975) pointed out that if limited seed dispersal causes clustering of individuals, such models cannot reach an equilibrium. This paper aims to resolve this issue by modifying the Neyman-Scott cluster point process. The new point processes are dynamic models with random immigration, and the continuous increase in the clustering of individuals stops at some level. Hence, an equilibrium state is achieved, and new individual-based spatially explicit neutral coalescent models are established. By fitting the spatial structure at equilibrium to individual spatial distribution data, we can indirectly estimate seed dispersal and effective population density. These estimates are improved when genetic data are available, and become even more sophisticated if spatial distribution and genetic data pertaining to the offspring are also available.     

Avian frugivory and seed dispersal of a large fruited tree in an Indian moist deciduous forest

Seed dispersal systems in degraded areas can be compromised following the decline of large-bodied frugivore populations responsible for their dispersal. In this context we examined the seed dispersal ecology of a large fruited deciduous tree (Dillenia pentagyna) along a forest degradation gradient in India. We examined the effect of structural components of vegetation and frugivore foraging behavior on D. pentagyna seed dispersal. Depauperate mammalian community and declined large avian frugivores e.g. hornbills in our study site make this system a specialized one and currently dependent on only two large bodied avian frugivores. Seed dispersal followed an overall leptokurtic pattern and the seed dispersal kernels were best explained by an inverse power function. Seed dispersal kernels in dense forest indicated longer dispersal distances than moderately dense forest and degraded forest. In degraded areas, no dispersal away from the crown was recorded for D. pentagyna and it occurred at low density. Canopy foliage abundance of the surrounding vegetation of the focal trees was best explained by quantity of seed dispersal by large avian frugivores. The number of avian frugivore species those are effective disperser of D. pentagyna decreased along the degradation gradient. Avian frugivore behavior in terms of visitation and seed swallowed is a determining factor that controls quantity of seed dispersal. Our study underscores deleterious impact of forest degradation on avian disperser community which in turn would affect regeneration capacity of degraded forest.     

The effects of Sasa and canopy gap formation on tree regeneration in an old beech forest

Abstract. We examined the response of tree seedling emergence and survival to the dieback of Sasa and canopy gap formation in an old‐growth forest near Lake Towada, northern Japan. Synchronous death of Sasa occurred in 1995. We established four types of sampling sites differing in forest canopy conditions (Closed or Gap) and Sasa status (Dead or Live). Gap‐Dead sites had the highest light levels and the greatest fluctuation in soil temperatures. The death of Sasa alone facilitated the emergence (Acer japonicum, Fagus crenata, Fraxinus lanuginosa, and Tilia japonica) and survival (Acanthopanax sciadophylloides, F. crenata, F. lanuginosa, Kalopanax pictus, and Sorbus commixta) of species with a seedling bank strategy. Cercidiphyllum japonicum grew at all sites at a higher density than other species, but survived well only in Gap‐Dead sites. This behaviour was associated with a seed rain strategy. The additive effects of Sasa death and canopy gap formation promoted seedling emergence of pioneer tree species (Betula maximowicziana, Lindera umbellata, and Magnolia obovata), probably through break of dormancy by the large temperature fluctuation. In addition, the scarcity of advance regeneration in canopy gaps due to Sasa cover facilitates the regeneration of pioneer species. The dominance and dieback cycle of Sasa contributes to species diversity in this forest.     

A test of the escape and colonization hypotheses for zoochorous tree species in a Western Amazonian forest

In order to assess the importance of seed dispersal (escape and colonization hypotheses), I used transplant experiments for seeds and seedlings of 5–11 plant species with fleshy fruits in a lowland tropical forest (Tinigua National Park, Colombia). I controlled seed density, distance to parental tree, and habitat type. I monitored seed removal, seedling survival, and seedling growth during the first year of development for an average of 554 seeds and 169 seedlings for each species. I supplemented the experimental results with measurements of natural recruitment. I found little support for the escape hypothesis during the seed and seedling stages. For six species that showed differences in seed removal associated with distance, five showed highest removal away from, than close to parent trees, suggesting predator satiation. Seedling survival during the first year was not consistently associated with low densities and long distances from parent trees. For the majority of species, seedlings did not survive flooding in low basins, and there was growth advantage for most plant species in canopy gaps. These differences imply advantages for seed dispersal to adequate habitats, as predicted by the colonization hypothesis. In contrast to experiments, strong negative distance-dependent effects were evident when analyzing natural recruitment patterns. The ratio between saplings and seedlings was higher away from parent trees for the species with enough recruitment to be analyzed and this suggests that a negative distance-dependent effect may also occur after seedling establishment. This pattern is suspected for several other species, but an analysis with some of the other most common trees showed a variety of negative, neutral, and positive distance dependent effects. This study emphasizes the importance of long-term studies to asses the role of seed dispersal.     

Improved recruitment of a lemur-dispersed tree in Malagasy dry forests after the demise of vertebrates in forest fragments

The objective of this study was to examine how the processes of seed dispersal and seed predation were altered in forest fragments of the dry forest of Madagascar, where the usual seed dispersers and vertebrate seed predators were absent, using a lemur-dispersed tree species (Strychnos madagascariensis; Loganiaceae) as an example. We then assessed how the changes in vertebrate community composition alter the regeneration pattern and establishment of this tree species and thus, ultimately, the species composition of the forest fragments. By using size-selective exclosures, data from forest fragments were compared with results from continuous forest where vertebrate dispersers and predators were abundant. Visits to the exclosures by mammalian seed predators were monitored with hair traps. In the continuous forest up to 100% of the seeds were removed within the 7 days of the experiments. A substantial proportion of them was lost to seed predation by native rodents. In contrast, practically no predation took place in the forest fragments and almost all seeds removed were dispersed into the safety of ant nests by Aphaenogaster swammerdami, which improves chances of seedling establishment. In congruence with these findings, the abundance of S. madagascariensis in the forest fragments exceeded that of the continuous forest. Thus, the lack of vertebrate seed dispersers in these forest fragments did not lead to a decline in regeneration of this animal-dispersed tree species as would have been expected, but rather was counterbalanced by the concomitant demise of vertebrate seed predators and an increased activity of ants taking over the role of seed dispersers, and possibly even out-doing the original candidates. This study provides an example of a native vertebrate-dispersed species apparently profiting from fragmentation due to flexible animal-plant interactions in different facets, possibly resulting in an impoverished tree species community.     

The role of seed dispersal in the natural regeneration of rain forest after strip-cutting in the Peruvian Amazon

Seed dispersal and forest regeneration were studied on a 30×150 m strip cleared by strip-cutting, a system of forest management designed for sustained yield (Hartshorn 1989), in high terrace rain forest in the Department of Loreto, Peru. After one year the strip was dominated by seedlings of a few bat- and bird-dispersed pioneer tree species (Cecropia spp., Melastomataceae, and Alchornea triplinervia); stump sprouts from cut trees and saplings that survived the clearing were less numerous. The density of saplings (>2 m in height) surviving the clearing was 903 per hectare; 94% of these survived the subsequent 18 months. About 30% of 417 stumps (>7.5 cm diameter at breast height) resprouted within 3 months, with an additional 10% sprouting in the subsequent 10 months. Sprouting frequency was greater for small stumps than large and varied greatly among plant families. Seed deposition over this year was much lower in the interior of the strip, both in species richness and numbers of seeds, than within the forest; strip edges were intermediate in richness and number. The decline in seed input from forest to edge to strip, both in species and in numbers of seeds, was most pronounced for bird-dispersed taxa (primarily Melastomataceae); bat- and wind- dispersed taxa were more evenly distributed. The similarity in bat species composition between the strip and nearby primary forest was higher than the similarity in bird species composition between these habitats, reflecting a failure of many forest bird species to venture into the strip. The predominance of Cecropia spp. and other pioneers of minimal commercial value in the regeneration question the sustainability of strip-cutting. Subsequent succession and future tree species composition on the cleared strip will depend not only on the survivorship and growth of sprouts, survivors, and seedlings, but also on responses of different seed-dispersing animal taxa to changes in the species composition and structure of the vegetation in the strip.     

Impact of the spatial uncertainty of seed dispersal on tree colonization dynamics in a temperate forest

An aggregated distribution of dispersed seeds may influence the colonization process in tree communities via inflated spatial uncertainty. To evaluate this possibility, we studied 10 tree species in a temperate forest: one primarily barochorous, six anemochorous and two endozoochorous species. A statistical model was developed by combining an empirical seed dispersal kernel with a gamma distribution of seedfall density, with parameters that vary with distance. In the probability density, the fitted models showed that seeds of Fagaceae (primarily barochorous) and Betulaceae (anemochorous) were disseminated locally (i.e. within 60 m of a mother tree), whereas seeds of Acer (anemochorous) and endozoochorous species were transported farther. Greater fecundity compensated for the lower probability of seed dispersal over long distances for some species. Spatial uncertainty in seedfall density was much greater within 60 m of a mother tree than farther away, irrespective of dispersal mode, suggesting that seed dispersal is particularly aggregated in the vicinity of mother trees. Simulation results suggested that such seed dispersal patterns could lead to sites in the vicinity of a tree being occupied by other species that disperse seeds from far away. We speculate that this process could promote coexistence by making the colonization rates of the species more similar on average and equalizing species fitness in this temperate forest community.     

The role of traditional forest gardens in the conservation of tree species in West Kalimantan, Indonesia

We compared forest gardens, or tembawang, in twoareas in West Kalimantan, Indonesia, to patches of primary forest in terms ofsuccessional stage, mode of dispersal and characteristics of human use ofnon-planted tree species. This information was acquired for 144 tree speciesinventoried in six tembawang forest gardens and two intactnatural forest patches, through interviews at the site and a survey of theliterature. In particular older tembawang were found tohave practically the same proportions of species of different successionalstages and modes of dispersal as natural forests, thus emphasising the potentialof tembawang in conserving tree species. Non-planted treespecies of tembawang and natural forests also havepractically indistinguishable spectra of human uses, indicating that themanagement of these tembawang does not significantlydiscriminate between species with certain uses. However, we also identified twoaspects that should be taken into account in considering the conservation roleof tembawang. The floras of the two study areas showedsignificant regional differentiation, implying that efficient conservation inWest Kalimantan needs to have a rather dense network. We also found that latesuccessional species and animal-dispersed species oftembawang were more commonly geographically widespread thanspecies of the same ecological characteristics found in natural forests. Thus,even if tembawang are similar to natural forests in termsof numbers of species with different ecological characteristics, the compositionof non-planted tree species in tembawang is not a randomsample from natural forest, but overrepresents species that are easily dispersedand/or established.     

Genetic diversity in Nothofagus alessandrii (Fagaceae), an endangered endemic tree species of the coastal maulino forest of Central Chile

BACKGROUND AND AIMS: The endemic tree Nothofagus alessandrii (Fagaceae) has been historically restricted to the coastal range of Region VII of central Chile, and its forests have been increasingly destroyed and fragmented since the end of the 19th century. In this study, the patterns of within- and among-population genetic diversity in seven fragments of this endangered narrowly endemic tree were examined. METHODS: Allozyme electrophoresis of seven loci of N. alessandrii was used to estimate genetic diversity, genetic structure and gene flow. KEY RESULTS: High levels of genetic diversity were found as shown by mean expected heterozygosity (H(e) = 0.182 +/- 0.034), percentage of polymorphic loci (P(p) = 61.2 %), mean number of alleles per locus (A = 1.8) and mean number of alleles per polymorphic locus (A(p) = 2.3). Genetic differentiation was also high (G(ST) = 0.257 and Nm = 0.7). These values are high compared with more widespread congeneric species. CONCLUSIONS: Despite its endemic status and restricted geographical range N. alessandrii showed high levels of genetic diversity. The observed patterns of diversity are explained in part by historical processes and more recent human fragmentation.     

Initial establishment and regeneration processes of an outlying isolated <Emphasis Type="Italic">Fagus crenata</Emphasis> Blume forest stand in the northernmost boundary of its range in Hokkaido,northern Japan

We investigated initial establishment and regeneration of an outlying isolated Fagus crenata forest stand at the northernmost boundary of its range in Hokkaido, northern Japan. The study site was located in the Sannosuke beech forest (42°46′48″N, 140°23′43″E), a representative outlying beech stand beyond its continuous range. A rectangular 0.75 ha plot was established on a southwest-facing slope and divided into 300 square sub-plots of 25 m². Within each sub-plot, stems over 5 cm in diameter at breast height (DBH) were identified and measured. Furthermore, the location of stems over 10 cm in DBH (canopy stem) was recorded within each sub-plot, and their increment core samples were extracted. Wood from fallen logs was sampled to estimate the species composition of the coarse woody debris. Micro-relief of the plot was investigated by leveling with compasses for a 2.5 m × 2.5 m grid system. In the plot, the population of F. crenata was divided into three sub-populations by their frequency distribution of age. The oldest sub-population, over 121 years old, had been established in small-localized gap in the plot. The sub-population between 81 and 120 years old and the sub-population less than 80 years old were regenerated after a landslide and windthrow in a 1954 typhoon, respectively. Furthermore, dominant species in the plot shifted from Quercus mongolica var. grosseserrata to F. crenata. Consequently, regeneration of F. crenata, i.e., expansion of forest stands, at the northernmost boundary of its range was primarily dependent on episodic natural disturbance, which may be responsible for the reduction of their migration rate in Hokkaido, northern Japan.