Morphological structure and optical properties of the wings of Morphidae

The morphological structure and optical properties of the wings of 14 species of Morphidae have been investigated. Most of the scales of the iridescent species of Morphidae （Lepidoptera） present a very particular structure. The ground scales, responsible for the major part of the optical properties, are covered by a very regular set of longitudinal ridges. The ridges themselves are constituted by a superposition of lamellae that act locally as a multilayered structure. This very specific morphology leads to both interferences and diffraction effects. The first one is responsible of the brilliant blue coloration of the males, while the second one diffracts this colored light at a very large angle. These two phenomena give to the butterfly a very effective long-range communication system. The morphological characteristics of the scales of the various species are presented in detail. Two types of optical measurement were performed on the iridescent wings of 14 different species of Morphidae： spectroscopic measurements under various incidences and gonioscopic measurements for a given incidence angle and wavelength. The first allows a determination of the index of refraction of the cuticular material. The second leads to the drawing of spatial diffraction maps. It shows that most of the reflected light is diffracted laterally over a very large angle （90° 〈 0 〈 120°, according to the different species） and that this repartition depends of the polarization of incident light. As predicted by previous calculations, the dissymmetric structure of the ridge is responsible for the separation of the polarization modes in the various diffraction orders.     

鸡下丘脑内生长抑素样成分的分布

SS (somatostatin) is widely distributed in the bodies of different animals from the low invertabrates (such as protozoa) to vertabrates.The distribution of SS in the brain varies in species.In mammalian brain,except cortex,hypothalamus contains the highest SS level (Zhou,1989).Evidences for SS innervation in the mammalian and human hypothalamus have been obtained by a number of investigators.However,the reports are very few in birds.The present paper disclosed the distribution of SS-like immunoreactivity in the chicken hypothalamus by using immunocytochemical (ABC) technique to provide phylogenetical evidence for a better understanding of SS function.     

Science and scientificity

A question about science We are now living in a scientific era, in which the theory and practice of science have penetrated into all aspects of society and science is often a hot topic. However, what on earth is science？ This question is largely neglected by many people, even researchers focusing on scientific studies may not have a very clear understanding of it.     

Replication of M13 single—stranded DNA bearing a sitespecific ethenocytosine lesion by Escherichia coil cell extracts

Previous investigation on the mutagenic effects of 3,N^4-Ethenocytosine (εC),a nonpairing DNA lesion,revealed the existence of a novel SOS-independent inducible mutagenic mechanism in E.coli termed UVM for UV modulation of mutagenesis.To investigate whether UVM is mediated by an alteration of DNA replication,we have set up an in vitro replication system in which phage M13 viral single-stranded DNA bearing a single site-specific (εC) residue is replicated by soluble protein extracts from E.coli cells.Replication products were analyzed by agarose gel electrophoresis and the frequency of translesion synthesis was determined by restriction endonuclease analyses.Our data indicate that DNA replication is strongly inhibited by εC,but that translesion DNA synthesis does occur in about 14% of the replicated DNA molecules.These results are very similar to those observed previously in vivo,and suggest that this experimental system may be suitable for evaluating alterations in DNA replication in UVM-induced cells.     

Bionics and Structural Biology： A Novel Approach for Bio-energy Production

Cellular metabolism is a very complex process. The biochemical pathways are fundamental structures of biology. These pathways possess a number of regeneration steps which facilitate energy shuttling on a massive scale. This facilitates the biochemical pathways to sustain the energy currency of the cells. This concept has been mimicked using electronic circuit components and it has been used to increase the efficiency of bio-energy generation. Six of the carbohydrate biochemical pathways have been chosen in which glycolysis is the principle pathway. All the six pathways are interrelated and coordinated in a complex manner. Mimic circuits have been designed for all the six biochemical pathways. The components of the metabolic pathways such as enzymes, cofactors etc., are substituted by appropriate electronic circuit components. Enzymes are related to the gain of transistors by the bond dissociation energies of enzyme-substrate molecules under consideration. Cofactors and coenzymes are represented by switches and capacitors respectively. Resistors are used for proper orientation of the circuits. The energy obtained from the current methods employed for the decomposition of organic matter is used to trigger the mimic circuits. A similar energy shuttle is observed in the mimic circuits and the percentage rise for each cycle of circuit functioning is found to be 78.90. The theoretical calculations have been made using a sample of domestic waste weighing 1.182 kg. The calculations arrived at finally speak of the efficiency of the novel methodology employed.     

Crystallization and micro FT-IR spectroscopy investigation of cytochrome bc_1 complex

A simple method to obtain large red crystals of cytochrome bc1 complex from beef heart mitochondria has been developed. These crystals are very stable. Their shapes are retained for a long time in tip-sealed Pasteur pipets placed in a refrigerator. The structure of crystalline cytochrome bc1 complex by micro FT-IR spectroscopy has been investigated. Based on the IR spectra of cytochrome c, the empirical assignments of the major infrared frequencies of cytochrome bc1 complex are given. Infrared frequencies and relative intensities of variable orientation and section of crystal are significantly different. These imply that infrared spectral characterization of the membrane protein crystallization is associated with the variable symmetries and orientations of the structure. Experimental results show that phospholipid exists in the crystal of cytochrome bc1 complex. The membrane protein is probably spanned on the mitochondrial membrane and buried in phospholipid bilayer in an asymmetric manner.     

Geochemistry and clay mineralogy of soils eaten by Japanese macaques

Three groups of soils from two Japanese monkey parks at Arashiyama (Honshu) and Takasakiyama (Kyushu) were analyzed for their geochemistry and clay and primary mineral content. Two groups (Y and T) of soils are regularly eaten by Japanese macaques; a third group (N) is not eaten. Of the elements analyzed, soil group N (not eaten) is within the range of all elements in the Y group, and is very different from the T group. These preliminary data suggest there is no chemical stimulus in soil eating behaviour. We also analyzed the mineralogy of the clay fraction (<2 μm) but could find only a possible stimulus from ingesting plagioclase and orthoclase minerals. The clay mineral content consists of small to trace amounts of metahalloysite that might play a role in countering the effects of diarrhea. However, from the available data there are no clear trends that would provide a stimulus for geophagic behaviour.     

Translocation of Otostegia bucharica,a highly threatened narrowly distributed relict shrub

Translocation is a recognized means of rescuing imperiled species but the evidence for the long-term success of translocations is limited. We report the successful translocation of reproductive individuals of a critically endangered shrub Otostegia bucharica from a site facing imminent habitat destruction into a nearby natural population of the species. The relocated plants were visited the year after planting and 13 years later to assess short-and long-term plant survival. Significant percentage of plants that survived transplanting shock and very dry spring following transplanting(around 36%), and further decrease of this number in the next 12 years by only 14%, indicated that O. bucharica is amenable to translocation using reproductive plants. Based on results of species distribution modeling, and failed attempts of ex situ cultivation, we propose introduction of this species into areas with suitable climatic and soil conditions.However, because there is currently no nature reserve in Uzbekistan having suitable conditions for the species under the present climate and that expected in the near future, and because all known habitats of O. bucharica are exposed to the very strong anthropogenic pressure, establishment of a new protected area, awareness building and involvement of local community in conservation activities are required to prevent extinction of this extremely rare species.     

A NEW SPECIES OF ALLIGATOR FROM SHANWANG, SHANDONG

<正> A crocodilian specimen is described and identified, as a new species of Alligalor in present paper. The material was collected from the Middle Member of the Shanwang Formation, Linqu County, Shandong Province by the members of the Linqu Paleontological Museum in 1984. Nearly 40 taxa of fossil vertebrates, including fishes, amphibians, reptiles, birds and mammals, have been reproted from this Miocene locality since 1930's (Yian et al. 1983, Qiu et al. 1986). Within the vertebrate fauna the fossil mammals and fishes are very rich, but the other are relatively rare. This is the first record of a crocodilan from the diatomaceous quarry of Shanwang.     

pepgrep: A Tool for Peptide MS/MS Pattern Matching

Typically, detection of protein sequences in collision-induced dissociation (CID) tandem MS (MS2) dataset is performed by mapping identified peptide ions back to protein sequence by using the protein database search (PDS) engine. Finding a particular peptide sequence of interest in CID MS2 records very often requires manual evaluation of the spectrum, regardless of whether the peptide-associated MS2 scan is identified by PDS algorithm or not. We have developed a compact cross-platform database-free command-line utility, pepgrep, which helps to find an MS2 fingerprint for a selected peptide sequence by pattern-matching of modelled MS2 data using Peptide-to-MS2 scoring algorithm. pepgrep can incorporate dozens of mass offsets corresponding to a variety of post-translational modifications (PTMs) into the algorithm. Decoy peptide sequences are used with the tested peptide sequence to reduce false-positive results. The engine is capable of screening an MS2 data file at a high rate when using a cluster computing environment. The matched MS2 spectrum can be displayed by using built-in graphical application programming interface (API) or optionally recorded to file. Using this algorithm, we were able to find extra peptide sequences in studied CID spectra that were missed by PDS identification. Also we found pepgrep especially useful for examining a CID of small fractions of peptides resulting from, for example, affinity purification techniques. The peptide sequences in such samples are less likely to be positively identified by using routine protein-centric algorithm implemented in PDS. The software is freely available at http://bsproteomics.essex.ac.uk:8080/data/download/pepgrep-1.4.tgz.     

Matrix metalloproteinases and their expression in mammary gland

The matrix metalloproteinases (MMPs) are a family of zine-dependent endopeptidases that play a key role in both normal and pathological processes involving tissue remodeling events.The expression of these proteolytic enzymes is highly regulated by a balance between extracellular matrix (ECM) deposition and its degradation,and is controlled by growth factors,cytokines,hormones,as well as interactions with the ECM macromolecules.Furthermore,the activity of the MMPs is regulated by their natural endogenous inhibitors,which are members of the tissue inhibitor of metalloproteinases (TIMP) family.In the normal mammary gland,MMPs are expressed during ductal development,lobulo-alveolar development in pregnancy and involution after lactation.Under pathological conditions,such as tumorigenesis,the dysregulated expression of MMPs play a role in tumor initiation,progression and malignant conversion as well as facilitating invasion and metastasis of malignant cells through degradation of the ECM and basement membranes.     

Prediction of PK-specific phosphorylation site based on information entropy

Phosphorylation is a crucial way to control the activity of proteins in many eukaryotic organisms in vivo. Experimental methods to determine phosphorylation sites in substrates are usually restricted by the in vitro condition of enzymes and very intensive in time and labor. Although some in silico methods and web servers have been introduced for automatic detection of phosphorylation sites, sophisticated methods are still in urgent demand to further improve prediction performances. Protein primary se-quences can help predict phosphorylation sites catalyzed by different protein kinase and most com-putational approaches use a short local peptide to make prediction. However, the useful information may be lost if only the conservative residues that are not close to the phosphorylation site are consid-ered in prediction, which would hamper the prediction results. A novel prediction method named IEPP (Information-Entropy based Phosphorylation Prediction) is presented in this paper for automatic de-tection of potential phosphorylation sites. In prediction, the sites around the phosphorylation sites are selected or excluded by their entropy values. The algorithm was compared with other methods such as GSP and PPSP on the ABL, MAPK and PKA PK families. The superior prediction accuracies were ob-tained in various measurements such as sensitivity (Sn) and specificity (Sp). Furthermore, compared with some online prediction web servers on the new discovered phosphorylation sites, IEPP also yielded the best performance. IEPP is another useful computational resource for identification of PK-specific phosphorylation sites and it also has the advantages of simpleness, efficiency and con-venience.     

The structural characterization and antigenicity of the S protein of SARS-CoV

The corona-like spikes or peplomers on the surface of the virion under electronic microscope are the most striking features of coronaviruses. The S (spike) protein is the largest structural protein, with 1,255 amino acids, in the viral genome. Its structure can be divided into three regions: a long N-terminal region in the exterior, a characteristic transmembrane (TM) region, and a short C-terminus in the interior of a virion. We detected fifteen substitutions of nucleotides by comparisons with the seventeen published SARS-CoV genome sequences, eight (53.3%) of which are non-synonymous mutations leading to amino acid alternations with predicted physiochemical changes. The possible antigenic determinants of the S protein are predicted, and the result is confirmed by ELISA (enzyme-linked immunosorbent assay) with synthesized peptides. Another profound finding is that three disulfide bonds are defined at the C-terminus with the N-terminus of the E (envelope) protein, based on the typical sequence and posit     

Downregulation of Rice DWARF 14 LIKE Suppress Mesocotyl Elongation via a Strigolactone Independent Pathway in the Dark

Strigolactones(SLs) are a class of plant hormones that control plant development in response to environmental conditions. In rice,mesocotyl elongation is regulated by SLs in the dark, while mesocotyls are longer in SL deficient or insensitive mutants. SLs are perceived by DWARF14(D14), which is a member of a small gene family. In this study, we examined the function of another D14 family gene in rice, D14 LIKE(D14L), focusing on mesocotyl growth. The mesocotyls of D14 L RNAi lines are longer than those of WT in the dark. This phenotype is enhanced when the D14 L RNAi lines are combined with the d14 mutation, suggesting that D14 and D14 L work independently to inhibit mesocotyl elongation. This phenotype is alleviated by the exogenous supply of GR24, a synthetic SL, suggesting that D14 L is not necessary for SL signaling. D14 L m RNA is predominantly expressed in vascular bundles and crown root primordia. Our results suggest that D14 L and D14 confer their effects via an SL independent pathway and an SL signaling pathway respectively.     

A REVIEW OF THE GENUS A CRICOTOPUS KIEFFER （DIPTERA： CHIRONOMIDAE） IN CHINA

The genus Acricotopus Kieffer including three species from China is reviewed.Acricotopus lucens (Zetterstedt) is reexamined. Two species A. simplex sp. nov. and A.zhalingensis sp. nov. are described as male imagines. Acricotopus simplex sp. nov. was collected from Xizang, Sichuan and Qinghai Provinces; the species differs from others of the genus by the absence of hind tibial comb, temporal and clypeal seta. Acricotopus zhalingensis sp. nov. was collected from Qinghai Province; the species is recognized by a combination of characters: the larger body size; the clypeus without setae; anal lobe strongly produced, nearly hemispherical shape; inferior volsella triangular, strongly sclerotized; gonostylus with 13 very long setae. A key to the world males of the genus is presented. The generic diagnosis is emended.All the types described in this paper are deposited in Department of Biology, Nankai University,China (BDN).     

印尼爪哇动物群与周口店地区及华南动物群对比

Recently the vertebrate faunal succession established by von Koenigswald in 1930s was replaced by a new one which was proposed by Sondaar (1984), which arose some problems in regional correlations, because the relationship between the two schemes are not very clear,and some of the guide fossils mentioned by von Koenigswald were not included in the new scheme. In China, we used to compare the Jetis Fauna with Gongwangling fauna, Trinil Fauna with Zhoukoudian and Yanjinggou Faunas, but at the present time, both of the faunal names were given up. The new dating works changed the old scheme of faunas, the oldest mammalian fossil record in Java is only 1.5 Ma, which had been thought to be Middle Pliocene in the past half century. The new results from the dating works are not well correlated yet with the turnover of faunal assemblages. It's sure that the Java Faunas have close relationship with that of China, but how we can correlate them precisely is still to be done in the future.
     

Protein Tyrosine Phosphatases Mediate the Signaling Pathway of Stomatal Closure of Vicia faba L.

The regulation of stomatal movement is one of the most important signaling networks in plants.The H^ -ATPase at the plasma membrane of guard cells plays a critical role in the stomata opening, while there are some conflicting results regarding the effectiveness of the plasma membrane H^ -ATPase inhibitor,vanadate, in inhibiting stomata opening. We observed that 2 mmol/L vanadate hardly inhibited light-stimulated stomata opening in epidermal peels of Vicia faba L., but significantly inhibited dark- and ABA-induced stomatal closure. These results cannot be explained with the previous findings that H~-ATPase was inhibited by vanadate. In view of the fact that vanadate is an inhibitor of protein tyrosine phosphatases (PTPases),we investigated whether the stomatal movement regulated by vanadate is through the regulation of PTPase,As expected, phenylarsine oxide (PAO), a specific inhibitor of PTPase, has very similar effects and even more effective than vanadate. Typical PTPase activity was found in guard cells of V.faba; moreover, the phosphatase activity could be inhibited by both vanadate and PAO. These results not only provide a novel explanation for conflicting results about vanadate modulating stomatal movement, but also provide further evidence for the involvement of PTPases in modulating signal transduction of stomatal movement.