Domoic acid in phytoplankton and fish in San Diego, CA, USA

We provide the first confirmation of the presence of domoic acid (DA) in phytoplankton and fish in San Diego, California, based on samples collected between 1 October 2003 and 29 September 2004. In February 2004, we detected DA in seawater samples collected off the Scripps Pier and also in coastal samples as far as 120 km to the north. At the same time we observed populations of toxic Pseudo-nitzschia australis and Pseudo-nitzschia multiseries as high as 7.7 × 10⁴ cells l⁻¹. Elevated concentrations of DA and abundances of the toxic species were also found further north in coastal waters of Orange County and, to a lesser extent, in southern Los Angeles County. DA concentrations in the viscera from four species of fish obtained at or near the Scripps Pier ranged from low to above the critical level for public safety. Samples of mussel tissues from the Scripps Pier analyzed by the State Department of Health Services contained low but detectable amounts of DA. Concomitant sea lion strandings from San Diego to Malibu Beach may be related to the presence of DA. DA in tissue from mussels and fish provides evidence for the local transfer of DA from an algal source to higher trophic levels in San Diego coastal waters.     

Population genetic diversity and structure of two rare vernal pool grasses in central California

Vernal pool ecosystems are declining throughout California, with only 10% of historic habitat remaining. This has endangered many specialist endemic plant species, leaving extant populations fragmented, isolated, and threatened or endangered. Recovery plans for the increasing number of endangered vernal pool species require information on their genetic and ecological status to guide conservation and restoration efforts. Federally threatened Neostapfia colusana (Colusa grass) and federally endangered Tuctoria greenei (Greene’s tuctoria) are two endemic vernal pool grasses of high conservation concern in central California. Remaining populations are highly fragmented due to range-wide habitat destruction. Using five polymorphic microsatellite markers for each species, we performed genetic surveys of 240 individuals from eight vernal pools for N. colusana, and 317 individuals from 13 vernal pools for T. greenei. We detected high within-population genetic diversity for both species, with average allelic diversities of 24 alleles/locus (mean Hobs = 0.68, mean Hexp = 0.71) for N. colusana, and 19 alleles/locus (mean Hobs = 0.77, and mean Hexp = 0.79) for T. greenei. Bayesian clustering and AMOVA indicated two genetically distinct population groups for N. colusana (Fst = 0.268, P < 0.0001), and three for T. greenei (Fst = 0.11, P < 0.0001). We found very slight temporal genetic structure at one N. colusana (Fst = 0.013, P < 0.05) and two T. greenei (Fst = 0.015, Fst = 0.018, P < 0.05) pools. These estimates of population genetic diversity and structure are critical measures for both species that will help inform recovery management actions.     

Poor reproductive success of Gray Vireos in a declining California population

Since the 1940s, populations of Gray Vireos (Vireo vicinior) in California have collapsed, presumably because of parasitism by Brown‐headed Cowbirds (Molothrus ater). In 2012 and 2013, we studied the vireo's nesting ecology to assess factors affecting two of California's largest remaining populations in the chaparral of San Diego County. Nest success was extremely low, with a model‐averaged probability of nest survival of only 0.08 (N = 95). More nest failures were due to predation (83%) than to cowbird parasitism (13%). Video‐recording at 30 nests revealed that California Scrub‐Jays (Aphelocoma californica) were the most common nest predator (67%). Of eight variables tested, height of shrubs surrounding the nest had the strongest negative influence on nest survival, but was more strongly correlated with cowbird parasitism than with jay predation. Despite frequent renesting, seasonal productivity was well below the level required to sustain a population, especially in northern San Diego County where we found no Gray Vireos at six of seven sites where they had been present from 1997 to 2001 and where cowbird parasitism was more frequent. The vireo's continuing range collapse contrasts with recent climate‐change models predicting a range expansion, highlighting the importance of demographic studies. Low nest success is likely contributing to population declines in California, and the additive effect of cowbird parasitism suppresses productivity. Conservation of Gray Vireos in California will likely require development of alternative approaches to cowbird and scrub‐jay control appropriate to sites widely scattered in rugged chaparral.     

Optimized DNA extraction methods for encysted embryos of the endangered fairy shrimp, Branchinecta sandiegonensis

The San Diego fairy shrimp Branchinecta sandiegonensis is a federally endangered species endemic to vernal pools in southern California, USA. Filling events in these habitats are highly variable, with some pools failing to hold water long enough for reproduction over many successive years. Studies of this species are thus hindered by the relatively rare appearance of aquatically active life history phases. Because diapausing cysts are abundant and present at all times, they provide an underutilized opportunity for both species identification and genetic studies. However, methods for extracting DNA from cysts are technically challenging because of their structure and size. Here we present a protocol for extracting DNA from B. sandiegonensis cysts in sufficient quantities for “DNA Barcoding”, microsatellite analysis and other genotyping and sequencing applications. The technique will aid in population genetic studies and species identification (since taxonomic keys only distinguish among adults), and will be applicable to other crustaceans with similar diapausing cysts.     

Invertebrate community composition differs between restored and natural vernal pools

The loss of freshwater wetlands worldwide has underscored the importance of restoration to enhance biodiversity and functional objectives. While aquatic invertebrate communities within restored perennial freshwaters are well studied, few studies have occurred in the greatly reduced habitat of seasonal wetlands, such as vernal pools. California vernal pools have experienced high habitat loss and support many threatened or endangered invertebrate species. We compared 90 natural and 90 restored vernal pools of different ages across 10 sites throughout California and Southern Oregon using the Sars' method. Large branchiopod abundance, total invertebrate abundance, class richness, and community composition were assessed between pool types (natural vs. restored) and along environmental gradients (e.g. site, pool depth, surface area, age since restoration). Large branchiopod and total invertebrate abundance were 215 and 274% higher in natural pools than restored pools, but class richness was not different. Community composition was significantly different and driven by greater abundances of vernal pool fairy shrimp, San Diego fairy shrimp, Ostracoda, Cladocera, and Copepoda in natural pools. Few environmental or habitat variables explained patterns in richness or abundance. Our work demonstrates that restored pools, even those decades old, are different than natural pools. Future mitigation and monitoring guidelines for restored vernal pools should include quantitative evaluations for aquatic invertebrates. Restored pools are not adequate compensation for lost natural pools because they do not have the same ecological functions and values.     

The emergence of Cochlodinium along the California Coast (USA)

A sudden and nearly synchronous emergence of the red tide forming dinoflagellate Cochlodinium along more than 800 km of California coastline was initially observed in late summer 2004. Thereafter high cell concentrations have been detected on an annual basis. Here, we present quantitative and semi-quantitative data indicating that Cochlodinium was uncommon in the phytoplankton community in California prior to 2004 and is now persisting as a more regular component and one that seasonally can cause red tides. The quantitative portion of this study was primarily conducted in Monterey Bay, where cell densities reached at least 6 × 10⁴ cells L⁻¹ during the initial outbreak. A semi-quantitative comparison of California coastal counties by the California Department of Health Services (CDHS) was also made: of the 15 counties surveyed (most with multiple sites per county), cells were detected only from Los Angeles County in the south to San Mateo County in the central region (seven counties), but not in the northern part of the state (six counties). Two counties in the central region of the state, San Luis Obispo and Santa Cruz, displayed intense and frequent periods of elevated Cochlodinium cell abundances. Although not observed in the state-wide CDHS survey, we occasionally found cells in San Diego County with densities up to 2.7 × 10⁴ cells L⁻¹. Though these colonial dinoflagellates have been recognized in California for over 80 years, with several “blooms” recorded prior to 2004, the species’ geographic range and abundance in recent years suggest significant shifts in the nearshore phytoplankton community of this region of the eastern Pacific.     

Pre-mission invasion of Erodium cicutarium in California

Abstract. The California grassland is dominated by alien plant species. It is generally assumed that the invasion of aliens began with the initial introduction of livestock by Spanish missionaries in 1769. In this paper we present pollen evidence which indicates that Erodium cicutarium, a Mediterranean annual, was well established in the Santa Barbara region several years before the founding of the first California mission at San Diego in 1769. Historical evidence shows that it took the Spanish nearly a decade to develop a livestock base in California. Disturbance by livestock was therefore not a necessary prerequisite for invasion by alien plants. Historical and macrofossil evidence indicates that E. cicutarium invaded California from Baja California.     

RANGE CHARACTERISTICS OF PACIFIC COAST BOTTLENOSE DOLPHINS (TURSIOPS TRUNCATUS) IN THE SOUTHERN CALIFORNIA BIGHT

Boat-based photoidentification surveys of bottlenose dolphins (Tursiops truncatus) were conducted from 1982 to 1989 in three discrete coastal study areas within the Southern California Bight: (1) Santa Barbara, California; (2) Orange County, California; (3) Ensenada, Baja California, Mexico. A total of 207 recognizable dolphins were identified in these three “secondary” study areas. These individuals were compared to 404 dolphins identified from 1981 to 1989 in our “primary” study area, San Diego, California, to examine the coastal movement patterns of bottlenose dolphins within the Southern California Bight. A high proportion of dolphins photographed in Santa Barbara (88%), Orange County (92%), and Ensenada (88%) were also photographed in San Diego. Fifty-eight percent (n= 120) of these 207 dolphins exhibited back-and-forth movements between study areas, with no evidence of site fidelity to any particular region. Minimum range estimates were 50 and 470 km. Minimum travel-speed estimates were 11-47 km/d, and all dolphin schools sighted during the study were within 1 km of the shore. These data suggest that bottlenose dolphins within the Southern California Bight are highly mobile within a relatively narrow coastal zone. Home-range dimensions and movement patterns for many vettebrate species are influenced, in part, by variation in food resources. The unique range characteristics documented during this study may reflect the highly dynamic nature of this coastal ecosystem and the associated patchy distribution of food resources available to these bottlenose dolphins.     

Hydroperiods of created and natural vernal pools in central Ohio: A comparison of depth and duration of inundation

Water levels were recorded weekly from six natural vernal pools and 10 created vernal pools at two forested wetland complexes in central Ohio. Vernal pool median water depth and duration of inundation were significantly greater at the created vernal pools than at the natural vernal pools (α = 0.05, P < 0.05). The average period of inundation for created pools was 309 ± 32 days, compared with 250 ± 16 days for natural pools. The created pools produced a range of inundation times, from 163 to 365 days in length, with three pools permanently inundated.     

Distribution quantified by microtopography in an assemblage of saxicolous mosses

Microtopography was quantified and related to plant microdistribution in an assemblage of bryophytes on granitic rocks in the inland chaparral of San Diego County, California, U.S.A. The dominant species, Grimmia laevigata, grew mostly on north-, east-, and west-facing surfaces with slope less than 60°. Other bryophytes tended to grow on steep, concave, north- and west-facing surfaces. Occurrence of these latter species was strongly associated with shade, as estimated from microtopography. The relationship of microdistribution to microclimate and ultimately to plant physiology can probably be successfully defined in systems such as this.Nomenclature follows Crum et al. (1973) for bryophytes and Munz (1974) for vascular plants.I thank W. C. Oechel for arranging access to the San Diego State University research area at Echo Valley and to facilities maintained there by the Systems Ecology Research Group; D. Alpert, C. Harkins, C. M. M. Hermida, J. Jacobson, and C. Scheidlinger for assistance with portions of the field work; M. P. Harthill and B. D. Mishler for help with identification of mosses; H. A. Mooney for comments on an earlier draft; and R. E. Cook and N. G. Miller for advice and support in many forms. This work was supported by National Science Foundation Grant DEB-7906428 and by a grant from the William and Alice Hinckley Scholarship Fund.     

Range and Frequency of Africanized Honey Bees in California (USA)

Africanized honey bees entered California in 1994 but few accounts of their northward expansion or their frequency relative to European honey bees have been published. We used mitochondrial markers and morphometric analyses to determine the prevalence of Africanized honeybees in San Diego County and their current northward progress in California west of the Sierra Nevada crest. The northernmost African mitotypes detected were approximately 40 km south of Sacramento in California’s central valley. In San Diego County, 65% of foraging honey bee workers carry African mitochondria and the estimated percentage of Africanized workers using morphological measurements is similar (61%). There was no correlation between mitotype and morphology in San Diego County suggesting Africanized bees result from bidirectional hybridization. Seventy percent of feral hives, but only 13% of managed hives, sampled in San Diego County carried the African mitotype indicating that a large fraction of foraging workers in both urban and rural San Diego County are feral. We also found a single nucleotide polymorphism at the DNA barcode locus COI that distinguishes European and African mitotypes. The utility of this marker was confirmed using 401 georeferenced honey bee sequences from the worldwide Barcode of Life Database. Future censuses can determine whether the current range of the Africanized form is stable, patterns of introgression at nuclear loci, and the environmental factors that may limit the northern range of the Africanized honey bee.     

Livestock grazing affects vernal pool specialists more than habitat generalists in montane vernal pools

Questions

Do livestock grazing and seasonal precipitation structure species composition in montane vernal pools? Which grazing and precipitation variables best predict cover of vernal pool specialists and species with broader habitat requirements? Is vernal pool species diversity correlated with livestock exclosure, and at what spatial scales?

Location

Montane vernal pools, northeast California, USA.

Methods

Vegetation was sampled in 20 vernal pools, including pools where livestock had been excluded for up to 20 years We compared plant species composition, functional group composition and species diversity among sites that varied in grazing history and seasonal precipitation using CCA and LMM.

Results

Although vernal pool specialists were dominant in montane vernal pools, over a third of plant cover was comprised of species that occur over a broad range of wetland or upland environments. The species composition of vernal pool plant communities was influenced by both livestock grazing and precipitation patterns, however the relative effects of these environmental variables differed by functional group. Livestock exclosures favoured perennial vernal pool specialists over annual vernal pool specialists. In contrast, the cover of habitat generalists was more strongly influenced by seasonal precipitation than livestock grazing. At small spatial scales, species richness and diversity decreased as the number of years a pool had been fenced increased, but this relationship was not significant at a larger spatial scale.

Conclusions

Both livestock grazing and seasonal precipitation structure the montane vernal pool plant community. We found that livestock grazing promotes the cover of annual vernal pool specialists, but at the expense of perennial vernal pool specialists. Wetter vernal pools, however, support higher cover of wetland generalist species regardless of whether pools are grazed.     

New notharctine (primates,adapiformes) skull from the Uintan (middle Eocene) of San Diego County,California

A new genus and species of notharctine primate, Hesperolemur actius, is described from Uintan (middle Eocene) aged rocks of San Diego County, California. Hesperolemur differs from all previously described adapiforms in having the anterior third of the ectotympanic anulus fused to the internal lateral wall of the auditory bulla. In this feature Hesperolemur superficially resembles extant cheirogaleids. Hesperolemur also differs from previously known adapiforms in lacking bony canals that transmit the internal carotid artery through the tympanic cavity. Hesperolemur, like the later occurring North American cercamoniine Mahgarita stevensi, appears to have lacked a stapedial artery. Evidence from newly discovered skulls of Notharctus and Smilodectes, along with Hesperolemur, Mahgarita, and Adapis, indicates that the tympanic arterial circulatory pattern of these adapiforms is characterized by stapedial arteries that are smaller than promontory arteries, a feature shared with extant tarsiers and anthropoids and one of the characteristics often used to support the existence of a haplorhine-strepsirhine dichotomy among extant primates. The existence of such a dichotomy among Eocene primates is not supported by any compelling evidence. Hesperolemur is the latest occurring notharctine primate known from North America and is the only notharctine represented among a relatively diverse primate fauna from southern California. The coastal lowlands of southern California presumably served as a refuge area for primates during the middle and later Eocene as climates deteriorated in the continental interior. Hesperolemur probably was an immigrant taxon that entered California from either the northern (Wyoming/Utah) or southern (New Mexico) western interior during the middle Eocene © 1995 Wiley-Liss, Inc.     

Dynamic landscapes shape post‐wildfire recolonisation and genetic structure of the endangered Hermes copper (Lycaena hermes) butterfly

1. The coastal sage scrub vegetation community experiences frequent fires, so the long‐term survival of species depends on the rate of recolonisations exceeding the rate of local extinctions. Recolonisation of these post‐wildfire habitats probably requires long‐distance dispersal events. These movements can also counter detrimental impacts associated with inbreeding. 2. The Hermes copper (Lycaena hermes) is an extremely rare butterfly inhabiting coastal sage scrub adjacent to San Diego, California, USA. Habitat loss due to urbanisation and impacts of recent wildfires has greatly restricted its range, prompting the United States Fish and Wildlife Service to list the Hermes copper as a Candidate Species in 2011. 3. Surveys for Hermes copper butterflies in 2010–2013 documented only two recolonisation events following wildfires in 2003 and 2007. Larger populations were readily detected each year, but detection of smaller populations was inconsistent. 4. Amplified fragment length polymorphism was used to identify potential genetic discontinuities within this species across the landscape. Results indicated that movements across much of the landscape were possible historically. However, individuals from three peripheral populations exhibited a higher degree of differentiation, suggesting more restricted dispersal in these regions. 5. From the results, it can be concluded that historically Hermes copper butterflies were able to move among habitat patches prior to recent changes in the landscape. However, low post‐fire recolonisation rates suggest limited contemporary dispersal, probably due to recent habitat fragmentation. This fragmentation is a relatively new event, as the human population in San Diego County experienced substantial growth in the late 20th Century.     

Effects of an African grass invasion on Hawaiian shrubland nitrogen biogeochemistry

African perennial C₄ grasses are highly successful invaders in Hawaiian ecosystems. We examined the effects of African molasses grass (Melinis minutiflora Beauv.) on Hawaiian shrubland nitrogen (N) dynamics without the influence of fire disturbance. Vegetation tissue carbon and nitrogen chemistry, soil inorganic N pools, net N mineralization rates, and total soil N were studied in three adjacent areas: a monospecificMelinis grassland, a mixed grass/shrubland mosaic, and an un-invaded shrubland.Melinis plots within the mosaic area exhibited the largest inorganic N pools and fastest net N mineralization rates, but were temporally variable with grass phenology. Un-invaded shrubland plots contained the smallest inorganic N pools and lowest net N mineralization rates. Grass foliar C:N and litter C:N were lower than those of common shrubland species, providing one possible link between species and ecosystem N dynamics at this site. The combined effects of N cycle modification, successful light competition, and fire-cycle enhancement make the invasion ofMelinis a significant perturbation to Hawaiian shrubland ecosystem function and successional dynamics. ei]Section editor H Lambers     

A new Senecio (Compositae) from California

Senecio ganderi is described as new from San Diego County, California. It is referable to theAurei species-group and is distinguished by its orange-yellow corollas, cordate to subcordate basal leaves, and its restriction to chaparral and recently burned areas.     

The effect of soil nitrogen on competition between native and exotic perennial grasses from northern coastal California

The invasion of European perennial grasses represents a new threat to the native coastal prairie of northern California. Many coastal prairie sites also experience anthropogenic nitrogen (N) deposition or increased N availability as a result of invasion by N-fixing shrubs. We tested the hypothesis that greater seedling competitive ability and greater responsiveness to high N availability of exotic perennial grasses facilitates their invasion in coastal prairie. We evaluated pairwise competitive responses and effects, and the occurrence of asymmetrical competition, among three common native perennial grasses (Agrostis oregonensis, Festuca rubra, and Nassella pulchra) and three exotic perennial grasses (Holcus lanatus, Phalaris aquatica, and Festuca arundinacea), at two levels of soil N. We also compared the root and shoot biomass and response to fertilization of singly-grown plants, so we could evaluate how performance in competition related to innate plant traits. Competitive effects and responses were negatively correlated and in general varied continuously across native and exotic species. Two exceptions were the exotic species Holcus, which had large effects on neighbors and small responses to them, and competed asymmetrically with all other species in the experiment, and the native grass Nassella, which had strong responses to but little effect on neighbors, and was out-competed by all but one other species in the experiment. High allocation to roots and high early relative growth rate appear to explain Holcus’s competitive dominance, but its shoot biomass when grown alone was not significantly greater than those of the species it out-competed. Competitive dynamics were unaffected by fertilization. Therefore, we conclude that seedling competitive ability alone does not explain the increasing dominance of exotic perennial grasses in California coastal prairie. Furthermore, since native and exotic species responded individualistically, grouping species as ‘natives’ and ‘exotics’ obscured underlying variation within the two categories. Finally, elevated soil N does not appear to influence competition among the native and exotic perennial grasses studied, so reducing soil N pools may not be a critical step for the restoration of California coastal prairie.     

A UNIQUE COLONIAL MARINE CENTRIC DIATOM,COENOBIODISCUS MURIFORMIS GEN. ET SP. NOV.1

A new colonial centric marine diatom, Coenobio-discus muriformis gen. et sp. nov. (family Coscinodiscaceae) has been found in San Diego Bay, San Diego, California. The colony is composed of a single layer of 200-530 cells linked girdle to girdle by a compartmentalized matrix. The colony has the shape of a slightly concavo-convex disk approximately 400 μ. in diameter. Each cell is about 10 μ, in diameter and the valves have many structural features in common with those of Thalassiosira. The organic matrix contains 6-11 partitions that radiate from each cell, forming a number of extracellular chambers. The organic matrix does not contain chitin or cellulose as a major constituent. Histochemical similarities are found with the capsular and tubular material of previously described diatoms. The colonies reproduce without passing through a unicellular vegetative stage.     

Meeting Announcement

The San Diego Glycobiology Symposium March 13–14, 2009, Shelter Pointe Hotel and Marina, SanDiego, California, USA The 12th Annual San Diego Glycobiology Symposium will take placeat the Shelter Pointe Hotel and Marina in San Diego, California.The symposium is jointly organized     

Conservation genetics of Butte County meadowfoam (Limnanthes floccosa ssp. californica Arroyo), an endangered vernal pool endemic

The endangered annual plant Limnanthes floccosa ssp. californica Arroyo is restricted to vernal pools in Butte County, California. To identify populations with unique genetic resources, guide reintroduction efforts, and design seed collection scenarios for long-term ex situ seed storage we determined extant genetic diversity and structure by surveying 457 individuals from 21 distinct populations using nine polymorphic microsatellite markers. We found low within population genetic diversity: low allelic diversity (1.9 [0.06 SE] alleles/locus); low heterozygosity (H _obs = 0.10 ± 0.018, H _exp = 0.19 ± 0.015), and a high fixation index (0.556 ± 0.044). The number of polymorphic loci ranged between 11 and 89%. Bayesian ordination determined 20 distinct populations and we found high genetic structure among these (F _st = 0.65, P < 0.0001). We identified notable gene flow barriers across populations, confirming regional structuring between three previously defined population density centers and two outlying populations (F _st = 0.21, P < 0.0001). Population size estimates ranged between ~50 and >5,000 extant plants per site. Our study confirms previous isozyme-based results and suggests that the loss of any population would represent a significant loss in the species’ genetic diversity. Recovery requires active restoration of existing populations and permanent habitat protection. We recommend close comparison of microhabitats of declining populations with genetically similar populations, to determine the potential for human assisted gene flow via seed movement to recover declining populations.