Biodiversity under rocks: the role of microhabitats in structuring invertebrate communities in Brazilian outcrops

There is little knowledge on the factors that can structure communities of tropical arthropods that live under rocks (lapidicolous communities). Using 28 rock shelters in a small granitic outcrop, we examined the relations among area, inclination, organic matter content, substrate moisture and distance from the border of the outcrop and richness and diversity of the communities. In total, we collected 1216 individuals from 106 morphospecies of Araneida, Acarina, Polyxenida, Spirostreptida, Dermaptera, Neuroptera, Orthoptera, Dictyoptera, Psocoptera, Coleoptera, Hymenoptera, Diptera, Embioptera, Homoptera, Isoptera, Heteroptera, Lepidoptera, Collembola, Nematoda and Oligochaeta. The richness and diversity of the lapidicolous communities were significantly correlated with area, inclination and distance from the edge of the outcrop in the dry season. The richness and diversity of lapidicolous communities were significantly correlated with organic matter, substrate moisture and area in the rainy season. Space availability seemed to be an important structuring factor for lapidicolous communities in the present study, the most significant variables (substrate moisture and organic matter) were related to shelter area.     

Primary faunal succession in volcanic terrain: lava and cave studies on the Canary Islands

Invertebrate communities in volcanic habitats of different ages on the islands of La Palma and El Hierro were studied using standardized trapping and searching techniques. A variety of graphical and numerical approaches were used to analyse relationships among the sites. Young, barren lava flows constitute aeolian ecosystems with a fauna of generalized detritivores and predators, especially collembolans, earwigs, thysamirans and crickets. Surface samples have many individuals and low diversity; those from caves have smaller numbers but similar taxonomic composition.
Vegetated surface habitats have richer communities, with diverse herbivores and predators but largely without the pioneer 'lavicolous' species. Caves with high humidity and stable temperature contain mainly specialized troglobitic species, but if there are both dry and humid sections lavicoles may also be present. Divergence into distinct epigean and hypogean communities results from both abiotic and biotic processes, including erosion and plant succession. While these occur mainly on the surface they also affect caves, increasing humidity and providing insulation from variations in external environmental conditions; the process is considered as a form of 'maturation' of the caves. Various models of succession are considered, which might help to account for the disappearance of lavicoles from mature epigean and hypogean communities.     

Genome and cuticular hydrocarbon‐based species delimitation shed light on potential drivers of speciation in a Neotropical ant species complex

Geographic separation that leads to the evolution of reproductive isolation between populations generally is considered the most common form of speciation. However, speciation may also occur in the absence of geographic barriers due to phenotypic and genotypic factors such as chemical cue divergence, mating signal divergence, and mitonuclear conflict. Here, we performed an integrative study based on two genome‐wide techniques (3RAD and ultraconserved elements) coupled with cuticular hydrocarbon (CHC) and mitochondrial (mt) DNA sequence data, to assess the species limits within the Ectatomma ruidum species complex, a widespread and conspicuous group of Neotropical ants for which heteroplasmy (i.e., presence of multiple mtDNA variants in an individual) has been recently discovered in some populations from southeast Mexico. Our analyses indicate the existence of at least five distinct species in this complex: two widely distributed across the Neotropics, and three that are restricted to southeast Mexico and that apparently have high levels of heteroplasmy. We found that species boundaries in the complex did not coincide with geographic barriers. We therefore consider possible roles of alternative drivers that may have promoted the observed patterns of speciation, including mitonuclear incompatibility, CHC differentiation, and colony structure. Our study highlights the importance of simultaneously assessing different sources of evidence to disentangle the species limits of taxa with complicated evolutionary histories.     

A study of Culicoides in Rondônia,in the Brazilian Amazon: species composition,relative abundance and potential vectors

There is very little information available about Culicoides species (Diptera: Ceratopogonidae) in the western Brazilian Amazon. However, studies of the fauna of this region are essential to knowledge of the species and potential vectors within it. Thus, the present study aims to evaluate the abundance, richness and composition of Culicoides species in rural areas in the state of Rondônia, Brazil. Culicoides specimens were collected in forest and pasture environments in the municipality of Porto Velho, using light traps. A total of 1708 individuals (1136 females and 572 males) belonging to 33 species were collected; 28 of these samples represent new records for the state of Rondônia and include the first record of Culicoides contubernalis in Brazil. Culicoides insignis was the most abundant species (86.1%). Species richness was greater in forest areas (32 species, 96.96%), whereas pastures presented the greatest number of Culicoides captured (n = 1540, 90.1%). This study shows that Culicoides populations differ between forest and pasture environments and indicates that the abundance of C. insignis is an important factor in epidemiological vigilance studies in the region.     

Diversity of microbial communities colonizing the walls of a Karstic cave in Slovenia

Karstic cave systems in Slovenia receive substantial amounts of organic input from adjacent forest and freshwater systems. These caves host microbial communities that consist of distinct small colonies differing in colour and shape. Visible to the naked eye, the colonies cover cave walls and are strewn with light-reflecting water droplets. In this study, the diversity of prokaryotes constituting these unusual microbial communities in Pajsarjeva jama cave was examined. A molecular survey based on small subunit rRNA diversity showed a high diversity within the Bacteria , while members of Archaea were not recovered. A total of eight bacterial phyla were detected. The application of various species richness estimators confirmed the diverse nature of the microbial community sample. Members of Gammaproteobacteria were most abundant in the clone libraries constructed and were followed in abundance by members of Actinobacteria and Nitrospira . In addition, members of Alphaproteobacteria, Betaproteobacteria and Deltaproteobacteria as well as Acidobacteria, Verrucomicrobia, Planctomycetes, Chloroflexi and Gemmatimonadetes were identified in clone libraries. The high number of clones most closely related to environmental 16S rRNA gene clones showed the broad spectrum of unknown and yet to be cultivated microorganisms inhabiting these cave systems.     

Entomogenous fungi in tropical forest ecosystems: an appraisal

Abstract. 1. Species of the genus Cordyceps (Ascomycotina; Clavicipitales) are the commonest fungi encountered on arthropods in tropical forests.
2. The asexual states of Cordyceps may occur in conjunction with or separately from the perfect state and are classified in the genera Hirsutella, Hymenostilbe, Nomuraea, Paecilomyces and Verticillium of the imperfect fungi (Deuteromycotina; Moniliales).
3. Most Cordyceps species have a restricted host range and this rigid host specificity, at the generic or tribal level, is especially evident in ant-fungal associations.
4. Pathogenicity was not tested but circumstantial evidence is presented which supports the view that Cordyceps species are primary pathogens of arthropods.
5. Observations of living, infected ants suggest that behavioural patterns are radically altered, possibly altruistically orientated.
6. It is thought that entomogenous fungi are involved in the regulation of arthropod populations and may help to maintain stability in tropical forest ecosystems.
7. The value of these organisms to man may be in the metabolites they produce rather than in their direct usage as biological control agents of insect pests.     

Primate communities: Their structure and role in tropical ecosystems

The structure of primate communities living in a number of undisturbed areas is described and compared. Species richness is highest in tropical rain forests of Africa and South America, where up to 14 different species can share the same habitat. The number of sympatric primates in woodlands and savannas is always much lower. Some striking differences in community structure may be observed between communities living in apparently similar habitats. Three major factors may be held responsible for such discrepancies: history and paleoecology, present spatial heterogeneity of the vegetation, and competition with other taxonomic groups. The role of primates in the functioning of forest ecosystems is discussed. Though their trophic impact may be important, the role they play in seed dispersal appears to be more significant; they contribute greatly to homeostasis, as well as to regeneration, of the rain forests. A number of ecological traits are particularly developed among primates and may have contributed to the rapid evolutionary success of the order. Their predominantly vegetarian diet allows them to build up higher population densities than sympatric carnivorous mammals;their arborealism permits them to make use of all edible plant material available in a tridimensional environment; the opportunistic tendencies of some cebids, cercopithecids, and pongids enable them to take advantage of a variety of habitats and situations; and finally, an extended socialization period and a long life-span, allowing them to develop social traditions, give to many of them a further possibility to adapt quickly to novel situations. This paper is a revised version of the third Osman Hill Memorial Lecture delivered at the joint meeting of the Primate Society of Great Britain and the Association for the Study of Animal Behaviour, held in London on 2/3 December 1982.     

Plant species richness–environment relationships across the Subantarctic–Patagonian transition zone

Aim To evaluate the relative importance of climate, productivity, environmental heterogeneity, biotic associations and habitat use by cattle to account for the species richness of trees, shrubs and herbs across the Subantarctic–Patagonian transition. Location An area of c. 150 × 150 km, within the transition zone between the Subantarctic and Patagonian subregions on the eastern slope of the Andes (c. 39–42° S, 70–72° W). Methods All vascular plants found at each one of 50 (10 × 10 m) sampling plots were counted to estimate the local tree, shrub and herb species richness. Path analysis was used to evaluate the relationship between the richness of the three life‐forms and plant cover, dried litter biomass, mean annual temperature, annual precipitation, daily temperature range, substrate heterogeneity and number of faecal pats. Principal coordinates of neighbour matrices was used to model the spatial autocorrelation of the data. Results Total plant species richness showed a unimodal pattern of spatial variation across the transition. Richness responded positively to indirect effects of precipitation mediated through plant cover, but there was a negative overall effect of precipitation on richness towards the west of the transition, most strongly for trees. An increase in substrate heterogeneity promoted a local increase in herb and shrub richness; the richness of trees increased in sites with steeper slopes. Canopy closure had a direct negative impact on herb richness; it also increased the local accumulation of litter, which negatively affected shrub and herb richness. The impact of habitat use by cattle negatively affected herb richness in areas to the east of the biogeographical transition. Main conclusions We suggest that the importance of indirect climatic effects mediated by vegetation cover can account for species richness patterns across this transition, most strongly for woody species, which supports the productivity hypothesis. The southern temperate forests towards the west may represent a deviation from the predictions of the water–energy dynamics hypothesis. Dissimilar spatial patterns of variation in the richness of woody and herbaceous species, and their different responses to climatic and heterogeneity variables across the transition, suggest that plant life‐form influences the plant species richness–environment relationships.     

Species limits and hybridization zones in Icterus cayanensis–chrysocephalus group (Aves: Icteridae)

One of the best examples of differentiation and hybridization among South American passerine birds is exhibited by Icterus cayanensis (Epaulet Oriole) and Icterus chrysocephalus (Moriche Oriole). Icterus chrysocephalus is a monotypic species restricted to northern South America. Icterus cayanensis is a polytypc species that ranges from Suriname and French Guyana to northern Argentina. Five subspecies are recognized to I. cayanensis. Hybrid zones are known between I. cayanensis and I. chrysocephalus as well as between subspecies of I. cayanenis, even though character variation has never been adequately assessed and mapped. Although molecular data support the hypothesis that I. cayanensis and I. chrysocephalus form a monophyletic group, they do not support the species limits currently recognized within this group. We analysed the geographic variation of plumage characters along the range of this group to map the geographic variation of individual plumage characters and identify the populations that have uniform phenotypic character expression and therefore represent genuine phylogenetic species. We also used molecular data to investigate the phylogenetic relationships among these species. Geographic variation of plumage characters, habitat preferences and molecular data identified four species within I. cayanensis–chrysocephalus clade: an Amazonian species group, formed by I. cayanensis and I. chrysocephalus and a Southern species group composed of I. pyrrhopterus and I. tibialis. The Amazonian species are separated by a relatively narrow hybrid zone along the Amazon valley, whereas the Southern species are separated by a hybrid zone that is larger than the ranges of the two species individually. © 2008 The Linnean Society of London, Biological Journal of the Linnean Society, 2008, 95 , 583–597.     

DarkDivNet – A global research collaboration to explore the dark diversity of plant communities

DarkDivNet is a global research collaboration which explores dark diversity — the set of species that are absent from a site despite being suitable under the site conditions and present in the region. Participants of the network survey vascular plant diversity both at local (10  m × 10 m) and regional scales (radius 10 km) using a standardized approach. They also measure simple plant traits and collect soil samples. Observed and dark diversity together form the site‐specific species pool, and the ratio of observed diversity and dark diversity describes community completeness. We shall explore how observed and dark diversity, site‐specific species pool and community completeness vary across natural and anthropogenic gradients. We link plant diversity measures to the information obtained from environmental DNA: soil biota and plant taxa that occurred at the site before. We will refine existing dark diversity methods and use large vegetation databases to infer species habitat suitability. We expand the dark diversity concept from a purely taxonomy‐based approach to include the functional and phylogenetic aspects of diversity. DarkDivNet currently includes 161 planned sampling areas globally, but new participants are welcome. The main vegetation sampling period is scheduled until September 2020, with the first research papers being produced after that.     

Large ecosystems in transition: Bifurcations and mass extinction

We propose a model of multispecies populations surviving on distributed resources. System dynamics are investigated under changes in abiotic factors such as the climate, as parameterized through environmental temperature. In particular, we introduce a feedback between species abundances and resources via abiotic factors. This model is apparently the first of its kind to include a feedback mechanism coupling climate and population dynamics. Moreover, we take into account self-limitation effects. The model explains the coexistence of many species, yet also displays the possibility of catastrophic bifurcations, where all species become extinct under the influence of abiotic factors. We show that as these factors change there are different regimes of ecosystem behavior, including a possibly chaotic regime when abiotic influences are sufficiently strong.     

Multiple cave invasions by species of the planthopper genus Oliarus in Hawaii (Homoptera: Fulgoroidea: Cixiidae)

Although geologically young, the Hawaiian Islands harbour a rich and remarkably diverse fauna of terrestrial troglobites: more than 70 cave species are known from Kauai, Oahu, Molokai, East Maui, and Hawaii Island. Among the more speciosc groups that have invaded the subterranean biome are the planthoppers (Homoptera Cixiidae) of the genus Oliarus. Five new obligately cavernicolous (troglobitic) Oliarus species which differ in their degree of troglomorphy and male genital structures, are described from lava tubes on the Hawaiian Islands: O. lorettae sp. nov. and O. makaiki sp. nov. from Hawaii Island, O. gagnei sp. nov. and O. ivaikau sp. nov. from Maui Island, and O. kalaupapae sp. nov. from Molokai Island. Short diagnoses of the two troglobitic species already known, 0. polyphemus Fennah, 1973 from Hawaii Island and 0. priola Fennah, 1973 from Maui are provided. Notes on the ecology and distribution of all cavernicolous species are given. Morphological evidence suggests that each of the seven cavernicolous Oliams species from Hawaii represents a separate, independent adaptive shift to underground environments. Potential relationships to the extant epigean species are discussed.     

Response of ground-dwelling arthropods to a 'push–pull' habitat management system: spiders as an indicator group

Abstract Studies were conducted to assess the numerical response of ground‐dwelling arthropods to a habitat management system (‘push–pull’) developed to control maize stemborers using spiders (Araneae) as an indicator group. In this cropping system, maize is intercropped with a stemborer moth‐repellent (push) plant while an attractant trap crop (pull) is planted around this intercrop. Two study sites in western Kenya and one site at the Grain Crops Institute of the Agricultural Research Council in Potchefstroom, South Africa, were sampled. Treatments comprised a maize monocrop and an intercrop of maize and desmodium, Desmodium uncinatum Jacq., with Napier grass, Pennisetum purpureum (Schumach), as a trap crop around the field (‘push–pull’) in each site. Experiments were laid out in a completely randomized design with four replications at each site. Ground‐dwelling spiders were sampled using a combination of pitfall traps and soil samples. A total of 2175 spiders, 78 species in 18 families, were recovered in Kenya and 284 spiders, 34 species in nine families, were recovered in South Africa. Lycosidae was the most abundant family, accounting for >50% of all individual spiders and 27.6% by species richness. Spiders were significantly more abundant at the Kenyan sites than in South Africa while species diversity was significantly higher in South Africa than at the Kenyan sites. At all sites, spider abundance was significantly higher in the ‘push–pull’ than in the maize monocrop plots. However, the overall spider diversity was only significantly higher in the ‘push–pull’ than in the maize monocrop plots in South Africa. Moreover, species dominance did not differ between the two cropping systems at all sites. The results showed that the ‘push–pull’ system evidently enhances overall abundance of spiders, illustrating its potential in further pest control in the maize agroecosystems where spiders may often be one of the most important predatory groups.     

Diversity and ecology of the bryophytes in the cave environment: a study on the volcanic and karstic caves of Sicily

The results of a long investigation (20 years) on bryophyte diversity of 28 Sicilian caves are reported; the study regarded both karstic and volcanic caves, located at altitudes ranging from 15 to 2030 m a.s.l. The bryophyte diversity consists of a total of 136 taxa, 20 liverworts, 3 hornworts and 113 mosses. The ecological analysis was performed using the Ellenberg indicator values for moisture, light and soil reaction to the substrate. On the whole, mesophytic and meso-hygrophytic, sciophytic and photo-sciophytic species strongly prevail independently from the geological nature of the caves; the values of the soil reaction to the substrate well reflect the characteristics of the substrate. The phytogeographical analysis shows the prevalence of the Mediterranean species, followed by the temperate and southern-temperate species. It is remarkable the occurrence of boreo-arctic-montane species, which find refuge for their survival in some high-altitude caves. Some typical species well adapted to the cave environment are reported, including Amphidium mougeotii, Isopterygiopsis pulchella, Thamnobryum alopecurum and Rhynchostegiella tenella, showing a troglophilous character. The occurrence of species of phytogeographical significance, as well as of conservation interest, e.g. Ptychostomum cernuum, Tortula bolanderi, Rhabdoweisia fugax, Grimmia torquata, Brachytheciastrum collinum, very rare in Italy, is emphasized too.     

Environmental drivers of species composition and functional diversity of dung beetles along the Atlantic Forest–Pampa transition zone

Human activities are causing a rapid loss of biodiversity, which impairs ecosystem functions and services. Therefore, understanding which processes shape how biodiversity is distributed along spatial and environmental gradients is a first step to guide conservation and management efforts. We aimed to determine the relative explanatory importance of biogeographic, environmental, landscape and spatial variables on assemblage dissimilarities and functional diversity of dung beetles along the Atlantic Forest–Pampa (i.e. forest–grassland) transition zone located in Southeast South America. We described each site according to their biogeographic position, environmental conditions, landscape features and spatial patterns. The compositional dissimilarity was partitioned into turnover and nestedness components of β‐diversity. Mantel tests and generalised dissimilarity models were used to relate β‐diversity and its components to biogeographic, environmental, landscape and spatial variables. Variation partitioning analysis was used to estimate the pure and shared variation in species composition and functional diversity explained by the four categories of predictors. Biome domain was the main factor causing dung beetle compositional dissimilarity, with a high species replacement between Atlantic Forest and Pampa. Biogeographic, environmental, landscape and spatial distances also affected the patterns of dung beetle dissimilarity and β‐diversity components. The shared effects of the four sets of predictors explained most of the variation in dung beetle composition. A similar response pattern was found for dung beetle functional diversity, which excluded biogeographic effects. Only the pure effects of environmental and spatial predictors were significant for species composition and functional diversity. Our results indicate that dung beetle species composition and functional diversity are jointly driven by environmental, landscape and spatial predictors with higher pure environmental and spatial effects. The forest–grassland transition zone promotes a strong species and trait replacement highly influenced both by environmental filtering and dispersal limitation.     

Measuring the Short‐term Success of Grassland Restoration: The Use of Habitat Affinity Indices in Ecological Restoration

Agricultural intensification threatens grasslands worldwide and the restoration of grasslands from arable lands can at least partially counter this threat. We studied grassland restoration by following early successional changes of arthropod assemblages (spiders, Araneae; true bugs, Heteroptera; orthopterans, Orthoptera; and ground beetles, Carabidae) on 1‐ and 2‐year‐old restorations using arable lands and native grasslands as two ends of the succession timescale. To examine the changes in species composition among the habitat types, we used habitat affinity indices based on fidelity and/or specificity of the species. We found that the number of species did not differ between habitat types, while species composition changed markedly with time. Species richness was thus not adequate to detect favorable changes after grassland restoration. Habitat affinity indices, on the other hand, were useful to detect compositional changes caused by the increasing numbers of species characteristic of target grasslands as early as the second year after restoration. Habitat affinity indices are easy‐to‐use, easy‐to‐interpret measures of restoration success; therefore, we recommend their use as measures complementary to species richness and simple similarity. Our results show that sowing low‐diversity seed mixture followed by mowing and grazing can be particularly successful in grassland restoration in time periods as short as 2 years.