代谢异速生长理论及其在微生物生态学领域的应用

新陈代谢是生物的基本生理过程,影响生物在不同环境中参与物质循环和能量转化的过程.代谢速率作为生物体重要的生命过程指标,几乎影响所有的生物活性速率,且在很多研究中均表现出异速生长现象.所谓代谢异速是指生物体代谢速率与其个体大小(或质量)之间存在的幂函数关系.代谢异速生长理论的提出,从机制模型角度解释了代谢异速关系这一普遍存在的生命现象.该理论利用分形几何学及流体动力学等原理,从生物能量学角度阐释了异速生长规律的机理,证实了3/4权度指数的存在;但同时有研究表明,权度指数因环境因素等影响处于2/3-1范围之间而非定值.随着研究工作的深入,代谢异速生长理论研究从起初的宏观动植物领域拓展到了微生物领域,在研究微生物的代谢异速生长理论时,可将微生物的可操作分类单元(Operational taxonomic unit,OTU)或具有特定功能的功能群视为一个微生物个体,基于其遗传多样性和功能多样性特征进行表征,以便于将微生物群落多样性与其生态功能性联系起来,使该理论在微生物生态学领域得到有效的补充和完善.尽管细菌具有独特的生物学特性,但与宏观生物系统中观测到的现象表现出明显的一致性.有研究表明,3个农田土壤细菌基于遗传多样性的OTU数的平均周转率分别为0.71、0.80和0.84,介于2/3与1之间,可能与生物代谢异速指数有一定关联,为微生物代谢异速指数的研究提出了一个参考解决方案.鉴于微生物个体特征和生物学特性,在分析代谢速率与个体大小关系中,从微生物单位个体的定义、个体大小表征到计量单位的统一,仍需更多的理论支持.分析了代谢异速生长理论在微生物与生态系统功能关系研究中的可能应用,延伸了该理论的应用范围,并对尚待加强的研究问题进行了评述和展望.     

WBE 模型及其在生态学中的应用：研究概述

介绍了WBE模型,综述了该模型在生态学中的应用进展。WBE模型,以及以该模型为基础的MTE模型,假设生物体为自相似分形网络结构,提出代谢速率和个体大小之间存在3/4指数关系,分别预测了从个体到生物圈多个尺度上的生物属性之间的异速生长关系,而且部分得到了验证。WBE模型的应用涵盖了个体组织生物量、年生长率,种群密度和生态系统单位面积产量、能量流动率等多个方面;即使在生物圈大尺度上,WBE模型也可用来预测试验中无法直接测量的特征变量的属性,如全球碳储量的估算等。至今,关于WBE和MTE模型仍然存在各种褒贬争论,讨论焦点主要集中于模型建立的前提假设以及权度指数的预测。今后的研究工作应规范试验技术和方法,考虑物种多样性和环境等因素的影响,提出符合各类生物的模型结构体系,使其具有更广泛的应用性和预测性。     

Size–abundance relationships in Florida ant communities reveal how ants break the energetic equivalence rule

1. Ants are among the most abundant terrestrial organisms, yet little is known of how ant communities divide resources because it is difficult to measure the number of individuals in colonies and the density of colonies. 2. The body size–abundance relationships of the ants of five upland ecosystems in Florida were examined. The study tested whether abundance, energy use, and total biomass were distributed among species and body sizes as predicted by Damuth's energetic equivalence rule. Estimates of average worker body size, colony size, colony mass, and field metabolic rates were used to examine the relationships among body sizes, energy use, and total biomass. 3. Analyses revealed significant variation in energy use and did not support the energetic equivalence hypothesis. Specifically, the energy use and total standing biomass of species with large workers and colonies was much greater than smaller species. 4. These results suggest that larger species with larger colonies account for a disproportionate fraction of the total abundance and biomass of ants. A general model of resource allocation in colonies provides a possible explanation for why ants do not conform to the predictions of the energetic equivalence rule and for why ants are so abundant.     

Universal temperature and body-mass scaling of feeding rates

Knowledge of feeding rates is the basis to understand interaction strength and subsequently the stability of ecosystems and biodiversity. Feeding rates, as all biological rates, depend on consumer and resource body masses and environmental temperature. Despite five decades of research on functional responses as quantitative models of feeding rates, a unifying framework of how they scale with body masses and temperature is still lacking. This is perplexing, considering that the strength of functional responses (i.e. interaction strengths) is crucially important for the stability of simple consumer–resource systems and the persistence, sustainability and biodiversity of complex communities. Here, we present the largest currently available database on functional response parameters and their scaling with body mass and temperature. Moreover, these data are integrated across ecosystems and metabolic types of species. Surprisingly, we found general temperature dependencies that differed from the Arrhenius terms predicted by metabolic models. Additionally, the body-mass-scaling relationships were more complex than expected and differed across ecosystems and metabolic types. At local scales (taxonomically narrow groups of consumer–resource pairs), we found hump-shaped deviations from the temperature and body-mass-scaling relationships. Despite the complexity of our results, these body-mass- and temperature-scaling models remain useful as a mechanistic basis for predicting the consequences of warming for interaction strengths, population dynamics and network stability across communities differing in their size structure.     

Energetic determinants of abundance in winter landbird communities

There is increasing evidence that individual energetics constrain macroecological patterns. Here we model total abundance within winter landbird communities as a function of (1) energy supply, as measured by ecosystem net primary productivity, and (2) energy use of individuals, as influenced by body mass and ambient temperature. Using data from the North American Christmas Bird Count, we find that total abundance increases with productivity to the 0.61 power, and decreases with body mass and environmental temperature as predicted by metabolic theory when individuals are below their thermoneutral zone. We note a negative relationship between ambient temperature and average body mass, and suggest that this community‐level pattern, reminiscent of Bergmann's Rule, is related to a tendency for small species to be less‐abundant or absent from cold locations. Results from this study emphasize the importance of individual‐level metabolism for understanding large‐scale ecological patterns.     

Trophic level scales positively with body size in fishes

Aim The existence of a body size hierarchy across trophic connections is widely accepted anecdotally and is a basic assumption of many food‐web models. Despite a strong theoretical basis, empirical evidence has been equivocal, and in general the relationship between trophic level and body size is often found to be weak or non‐existent. Location Global (aquatic). Methods Using a global dataset for fishes ( http://www.fishbase.org ), we explored the relationship between body size and trophic position for 8361 fishes in 57 orders. Results Across all species, trophic position was positively related to maximum length (r²= 0.194, b= 0.065, P < 0.0001), meaning that a one‐level increase in trophic level was associated with an increase in maximum length by a factor of 183. On average, fishes in orders that showed significantly positive trophic level–body size relations [mean = 51.6 cm ± 11.8 (95% confidence interval, CI)] were 86 cm smaller than fishes in orders that showed no relation [mean = 137.1 cm ± 50.3 (95% CI), P < 0.01]. A separate slopes model ANCOVA revealed that maximum length and trophic level were positively correlated for 47% (27 of 57) of orders, with two more orders showing marginally non‐significant positive relations; no significant negative correlations were observed. The full model (order × body size) explained 37% of the variation between body size and trophic position (P < 0.0001). Main conclusions Our results support recent models which suggest that trophic level and body size should be positively correlated, and indicate that morphological constraints associated with gape limitation may play a stronger role in determining body size in smaller fishes. Differences among orders suggest that the nature of the trophic level–body size relation may be contingent, in part, on evolutionary history.     

Beyond the '3/4-power law': variation in the intra- and interspecific scaling of metabolic rate in animals

In this review I show that the '3/4-power scaling law' of metabolic rate is not universal, either within or among animal species. Significant variation in the scaling of metabolic rate with body mass is described mainly for animals, but also for unicells and plants. Much of this variation, which can be related to taxonomic, physiological, and/or environmental differences, is not adequately explained by existing theoretical models, which are also reviewed. As a result, synthetic explanatory schemes based on multiple boundary constraints and on the scaling of multiple energy-using processes are advocated. It is also stressed that a complete understanding of metabolic scaling will require the identification of both proximate (functional) and ultimate (evolutionary) causes. Four major types of intraspecific metabolic scaling with body mass are recognized [based on the power function R=aMb, where R is respiration (metabolic) rate, a is a constant, M is body mass, and b is the scaling exponent]: Type I: linear, negatively allometric (b<1); Type II: linear, isometric (b=1); Type III: nonlinear, ontogenetic shift from isometric (b=1), or nearly isometric, to negatively allometric (b<1); and Type IV: nonlinear, ontogenetic shift from positively allometric (b>1) to one or two later phases of negative allometry (b<1). Ontogenetic changes in the metabolic intensity of four component processes (i.e. growth, reproduction, locomotion, and heat production) appear to be important in these different patterns of metabolic scaling. These changes may, in turn, be shaped by age (size)-specific patterns of mortality. In addition, major differences in interspecific metabolic scaling are described, especially with respect to mode of temperature regulation, body-size range, and activity level. A 'metabolic-level boundaries hypothesis' focusing on two major constraints (surface-area limits on resource/waste exchange processes and mass/volume limits on power production) can explain much, but not all of this variation. My analysis indicates that further empirical and theoretical work is needed to understand fully the physiological and ecological bases for the considerable variation in metabolic scaling that is observed both within and among species. Recommended approaches for doing this are discussed. I conclude that the scaling of metabolism is not the simple result of a physical law, but rather appears to be the more complex result of diverse adaptations evolved in the context of both physico-chemical and ecological constraints.     

Measurement of body size and abundance in tests of macroecological and food web theory

1. Mean body mass (W) and mean numerical (N) or biomass (B) abundance are frequently used as variables to describe populations and species in macroecological and food web studies. 2. We investigate how the use of mean W and mean N or B, rather than other measures of W and/or accounting for the properties of all individuals, can affect the outcome of tests of macroecological and food web theory. 3. Theoretical and empirical analyses demonstrate that mean W, W at maximum biomass (W(mb)), W when energy requirements are greatest (W(me)) and the W when a species uses the greatest proportion of the energy available to all species in a W class (W(mpe)) are not consistently related. 4. For a population at equilibrium, relationships between mean W and W(me) depend on the slope b of the relationship between trophic level and W. For marine fishes, data show that b varies widely among species and thus mean W is an unreliable indicator of the role of a species in the food web. 5. Two different approaches, 'cross-species' and 'all individuals' have been used to estimate slopes of abundance-body mass relationships and to test the energetic equivalence hypothesis and related theory. The approaches, based on relationships between (1) log(10) mean W and log(10) mean N or B, and (2) log(10) W and log(10) N or B of all individuals binned into log(10) W classes (size spectra), give different slopes and confidence intervals with the same data. 6. Our results show that the 'all individuals' approach has the potential to provide more powerful tests of the energetic equivalence hypothesis and role of energy availability in determining slopes, but new theory and empirical analysis are needed to explain distributions of species relative abundance at W. 7. Biases introduced when working with mean W in macroecological and food web studies are greatest when species have indeterminate growth, when relationships between W and trophic level are strong and when the range of species'W is narrow.     

Effects of metabolic level on the body size scaling of metabolic rate in birds and mammals

Metabolic rate is traditionally assumed to scale with body mass to the 3/4-power, but significant deviations from the '3/4-power law' have been observed for several different taxa of animals and plants, and for different physiological states. The recently proposed 'metabolic-level boundaries hypothesis' represents one of the attempts to explain this variation. It predicts that the power (log-log slope) of metabolic scaling relationships should vary between 2/3 and 1, in a systematic way with metabolic level. Here, this hypothesis is tested using data from birds and mammals. As predicted, in both of these independently evolved endothermic taxa, the scaling slope approaches 1 at the lowest and highest metabolic levels (as observed during torpor and strenuous exercise, respectively), whereas it is near 2/3 at intermediate resting and cold-induced metabolic levels. Remarkably, both taxa show similar, approximately U-shaped relationships between the scaling slope and the metabolic (activity) level. These predictable patterns strongly support the view that variation of the scaling slope is not merely noise obscuring the signal of a universal scaling law, but rather is the result of multiple physical constraints whose relative influence depends on the metabolic state of the organisms being analysed.     

The ecological and evolutionary energetics of hunter‐gatherer residential mobility

Residential mobility is a key aspect of hunter‐gatherer foraging economies and therefore is an issue of central importance in hunter‐gatherer studies. 1 - 7 Hunter‐gatherers vary widely in annual rates of residential mobility. Understanding the sources of this variation has long been of interest to anthropologists and archeologists. The vast majority of hunter‐gatherers who are dependent on terrestrial plants and animals move camp multiple times a year because local foraging patches become depleted and food, material, and social resources are heterogeneously distributed through time and space. In some environments, particularly along coasts, where resources are abundant and predictable, hunter‐gatherers often become effectively sedentary. But even in these special cases, a central question is how these societies have maintained viable foraging economies while reducing residential mobility to near zero.     

Responses of species abundance distribution patterns to spatial scaling in subtropical secondary forests

To quantify and assess the processes underlying community assembly and driving tree species abundance distributions(SADs) with spatial scale variation in two typical subtropical secondary forests in Dashanchong state‐owned forest farm, two 1‐ha permanent study plots (100‐m × 100‐m) were established. We selected four diversity indices including species richness, Shannon–Wiener, Simpson and Pielou, and relative importance values to quantify community assembly and biodiversity. Empirical cumulative distribution and species accumulation curves were utilized to describe the SADs of two forests communities trees. Three types of models, including statistic model (lognormal and logseries model), niche model (broken‐stick, niche preemption, and Zipf‐Mandelbrodt model), and neutral theory model, were estimated by the fitted SADs. Simulation effects were tested by Akaike's information criterion (AIC) and Kolmogorov–Smirnov test. Results found that the Fagaceae and Anacardiaceae families were their respective dominance family in the evergreen broad‐leaved and deciduous mixed communities. According to original data and random sampling predictions, the SADs were hump‐shaped for intermediate abundance classes, peaking between 8 and 32 in the evergreen broad‐leaved community, but this maximum increased with size of total sampled area size in the deciduous mixed community. All niche models could only explain SADs patterns at smaller spatial scales. However, both the neutral theory and purely statistical models were suitable for explaining the SADs for secondary forest communities when the sampling plot exceeded 40 m. The results showed the SADs indicated a clear directional trend toward convergence and similar predominating ecological processes in two typical subtropical secondary forests. The neutral process gradually replaced the niche process in importance and become the main mechanism for determining SADs of forest trees as the sampling scale expanded. Thus, we can preliminarily conclude that neutral processes had a major effect on biodiversity patterns in these two subtropical secondary forests but exclude possible contributions of other processes.     

Growth-size scaling relationships of woody plant species differ from predictions of the Metabolic Ecology Model

The Metabolic Ecology Model predicts that tree diameter ( D ) growth ( dD/dt ) scales with D ^1/3. Using data on diameter growth and height–diameter relationships for 56 and 40 woody species, respectively, from forests throughout New Zealand, we tested one prediction and two assumptions of this model: (i) the exponent of the growth–diameter scaling relationship equals 1/3 and is invariant among species and growth forms, (ii) small and large individuals are invariant in their exponents and (iii) tree height scales with D ^2/3. We found virtually no support for any prediction or assumption: growth–diameter scaling exponents varied substantially among species and growth forms, correlated positively with species' maximum height, and shifted significantly with increasing individual size. Tree height did not scale invariantly with diameter. Based on a quantitative test, violation of these assumptions alone could not explain the model's poor fit to our data, possibly reflecting multiple, unsound assumptions, as well as unaccounted-for variation that should be incorporated.     

Rates of molecular evolution in tree ferns are associated with body size,environmental temperature,and biological productivity

Variation in rates of molecular evolution (heterotachy) is a common phenomenon among plants. Although multiple theoretical models have been proposed, fundamental questions remain regarding the combined effects of ecological and morphological traits on rate heterogeneity. Here, we used tree ferns to explore the correlation between rates of molecular evolution in chloroplast DNA sequences and several morphological and environmental factors within a Bayesian framework. We revealed direct and indirect effects of body size, biological productivity, and temperature on substitution rates, where smaller tree ferns living in warmer and less productive environments tend to have faster rates of molecular evolution. In addition, we found that variation in the ratio of nonsynonymous to synonymous substitution rates (dN/dS) in the chloroplast rbcL gene was significantly correlated with ecological and morphological variables. Heterotachy in tree ferns may be influenced by effective population size associated with variation in body size and productivity. Macroevolutionary hypotheses should go beyond explaining heterotachy in terms of mutation rates and instead, should integrate population‐level factors to better understand the processes affecting the tempo of evolution at the molecular level.     

Repeatable inter‐individual variation in the thermal sensitivity of metabolic rate

Assessing whether trait variations among individuals are consistent over time and among environmental conditions is crucial to understand evolutionary responses to new selective pressures such as climate change. According to the universal thermal dependence hypothesis, thermal sensitivity of metabolic rate should not vary strongly and consistently among organisms, implying limited evolutionary response for metabolic traits under climate change. However, this hypothesis has been rarely tested at an individual level, leaving a gap in our understanding of climate change impacts on metabolic responses and their potential evolution. Using the amphipod Gammarus fossarum, we investigated the variability and repeatability of individual metabolic thermal reaction norms over time. We found large variations in both the thermal sensitivity (i.e. slope) and expression level (i.e. intercept) of individual metabolic reaction norms. Moreover, differences among individuals were consistent over time, and therefore repeatable. Inter‐individual variations in body mass resulted in a high repeatability of metabolic expression level but had no significant effect on the repeatability of thermal sensitivity. Overall, our results highlight that inter‐individual variability and repeatability of thermal reaction norms can be substantial. We conclude that these consistent differences among individuals should not be overlooked when apprehending the ecological and evolutionary effects of climate change.     

生态学代谢理论: 基于个体新陈代谢过程解释物种多样性的地理格局

新陈代谢是生物的基本生理过程。生态学代谢理论(metabolic theory of ecology)基于生物个体大小和环境温度对个体新陈代谢过程的影响, 使用尺度推移(scaling)的方法来解释多种生态学格局和过程。James Borwn等将这一理论用于解释物种多样性的大尺度格局, 并从机制上解释了物种多样性与环境温度的关系。这一理论提出了两个明确的预测: (1)物种多样性的对数与绝对温度的倒数之间呈线性关系; (2) 这一线性关系的斜率为–0.6至–0.7。这一理论自提出以来, 饱受争议, 经过了正反两方面经验数据的检验, 目前仍未形成一致的结论。虽然这一理论仍面临着一些有待解决的问题, 但它以崭新的思路和方法有别于以往的基于统计学方法的研究。人们过去对该理论的实证检验忽略了两个重要的约束条件, 即除温度以外的环境条件处于理想状态和群落处于平衡状态, 而这两个约束条件是理解该理论的基础。本文对生态学代谢理论的理论框架、预测和含义, 以及以往的检验结果进行阐述, 在此基础上提出了作者对该理论的若干认识和未来研究中应考虑的若干问题。     

Size matters in regulating the biodiversity of tropical forest soils

Tropical forests have long fascinated ecologists, inspiring a plethora of research into the mechanisms regulating their immense biodiversity, which originally captured the interests of early natural historians and explorers, and that still persists to this day. A new focus of this research emerged in the early 2000s highlighting the potential role of neutral (stochastic) processes in regulating the composition and diversity of tropical forest communities, and thus the maintenance of a large portion of global biodiversity (Hubbell, 2001). This strictly contrasted the long‐held belief that communities assembled via the sorting of species (and their abundances) via a deterministic response to local abiotic and biotic environmental conditions, reflecting the niche of each species (Leibold & McPeek, 2006). Yet, it is unlikely that the assembly of any community is solely governed by either stochastic or deterministic processes, but instead a combination of both. However, whether deterministic processes via niche‐based environmental sorting of species, or stochastic processes reflecting pattens of dispersal limitation, neutral effects and ecological drift dominate is often unclear. This prompts questions as to whether the relative influence of one process over another is dependent on the scale (spatial or temporal) or context of the study, or specific traits of the taxa under investigation (e.g., body size). In a From the Cover paper in this issue of Molecular Ecology, Zinger et al. (2018) tackle all these issues and show, among other things, that for soil microbes and mesofauna from tropical forests, the relative contribution of stochastic and deterministic processes in assembling their communities is strongly dependent on the body size or the studied taxa.