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1.
Phytoplankton account for >45% of global primary production, and have an enormous impact on aquatic food webs and on the entire Earth System. Their members are found among prokaryotes (cyanobacteria) and multiple eukaryotic lineages containing chloroplasts. Genetic surveys of phytoplankton communities generally consist of PCR amplification of bacterial (16S), nuclear (18S) and/or chloroplastic (16S) rRNA marker genes from DNA extracted from environmental samples. However, our appreciation of phytoplankton abundance or biomass is limited by PCR-amplification biases, rRNA gene copy number variations across taxa, and the fact that rRNA genes do not provide insights into metabolic traits such as photosynthesis. Here, we targeted the photosynthetic gene psbO from metagenomes to circumvent these limitations: the method is PCR-free, and the gene is universally and exclusively present in photosynthetic prokaryotes and eukaryotes, mainly in one copy per genome. We applied and validated this new strategy with the size-fractionated marine samples collected by Tara Oceans, and showed improved correlations with flow cytometry and microscopy than when based on rRNA genes. Furthermore, we revealed unexpected features of the ecology of these ecosystems, such as the high abundance of picocyanobacterial aggregates and symbionts in the ocean, and the decrease in relative abundance of phototrophs towards the larger size classes of marine dinoflagellates. To facilitate the incorporation of psbO in molecular-based surveys, we compiled a curated database of >18,000 unique sequences. Overall, psbO appears to be a promising new gene marker for molecular-based evaluations of entire phytoplankton communities.  相似文献   

2.
南亚热带贫营养水库春季浮游植物群落结构与动态   总被引:8,自引:1,他引:8       下载免费PDF全文
2005年1~6月,通过每两周一次的高频率采样,对南亚热带贫营养水库——梅溪水库的水文、营养盐和浮游植物进行了调查,并计算水体浮游植物生物量。主要结果如下:梅溪水库浮游植物具有物种少,生物量低,以飞燕角甲藻(Ceratium hirundinella)和多甲藻(Peridinium sp.)为优势藻的特征。12次采样24个样品共检测到浮游植物42种。浮游植物在早春(1~3月)和晚春(4~6月)有显著的差别,其中每次采样浮游植物早春平均13种,晚春平均21种。浮游植物总的细胞丰度为31~273 cells·ml-1,总生物量为0.176~2.024 mg·L-1之间。晚春浮游植物平均生物量明显高于早春。低营养盐和弱酸性水体有利于能够垂直迁移获得营养的鞭毛藻类和其它藻类之间竞争,而使其成为整个春季优势类群。在晚春,随着水温显著增加,浮游植物丰度和生物量也明显增加,但是降雨的增加降低了水体的透明度,大大减缓了由水温上升导致生物量增长的趋势。水温是梅溪水库浮游植物变化的主要限制因子,但是降雨有明显的干扰作用。  相似文献   

3.
Dimethylsulfoniopropionate (DMSP) is an abundant organic sulfur metabolite produced by many phytoplankton species and degraded by bacteria via two distinct pathways with climate-relevant implications. We assessed the diversity and abundance of bacteria possessing these pathways in the context of phytoplankton community composition over a 3-week time period spanning September–October, 2014 in Monterey Bay, CA. The dmdA gene from the DMSP demethylation pathway dominated the DMSP gene pool and was harboured mostly by members of the alphaproteobacterial SAR11 clade and secondarily by the Roseobacter group, particularly during the second half of the study. Novel members of the DMSP-degrading community emerged from dmdA sequences recovered from metagenome assemblies and single-cell sequencing, including largely uncharacterized gammaproteobacteria and alphaproteobacteria taxa. In the DMSP cleavage pathway, the SAR11 gene dddK was the most abundant early in the study, but was supplanted by dddP over time. SAR11 members, especially those harbouring genes for both DMSP degradation pathways, had a strong positive relationship with the abundance of dinoflagellates, and DMSP-degrading gammaproteobacteria co-occurred with haptophytes. This in situ study of the drivers of DMSP fate in a coastal ecosystem demonstrates for the first time correlations between specific groups of bacterial DMSP degraders and phytoplankton taxa.  相似文献   

4.
Plankton in mountain lakes are confronted with generally higher levels of incident ultraviolet radiation (UVR), lower temperatures, and shorter growing seasons than their lower elevation counterparts. The direct inhibitory effects of high UVR and low temperatures on montane phytoplankton are widely recognized. Yet little is known about the indirect effects of these two abiotic factors on phytoplankton, and more specifically whether they alter zooplankton grazing rates which may in turn influence phytoplankton. Here, we report the results of field microcosm experiments that examine the impact of temperature and UVR on phytoplankton growth rates and zooplankton grazing rates (by adult female calanoid copepods). We also examine consequent changes in the absolute and relative abundance of the four dominant phytoplankton species present in the source lake (Asterionella formosa, Dinobryon sp., Discostella stelligera, and Fragilaria crotonensis). All four species exhibited higher growth rates at higher temperatures and three of the four species (all except Dinobryon) exhibited lower growth rates in the presence of UVR versus when shielded from UVR. The in situ grazing rates of zooplankton had significant effects on all species except Asterionella. Lower temperatures significantly reduced grazing rates on Fragilaria and Discostella, but not Dinobryon. While UVR had no effect on zooplankton grazing on any of the four species, there was a significant interaction effect of temperature and UVR on zooplankton grazing on Dinobryon. Discostella and Dinobryon increased in abundance relative to the other species in the presence of UVR. Colder temperatures, the presence of zooplankton, and UVR all had consistently negative effects on rates of increase in overall phytoplankton biomass. These results demonstrate the importance of indirect as well as direct effects of climate forcing by UVR and temperature on phytoplankton community composition in mountain lakes, and suggest that warmer climates and higher UVR levels may favor certain species over others.  相似文献   

5.
The relationship between physicochemical factors and plankton abundance in the newly created Bui reservoir was studied during 2011 and 2012. The objective was to assess the influence of physicochemical factors on plankton abundance and provide data for monitoring the hydrobiology of the newly created Bui reservoir. Two sampling stations were selected on the Black Volta upstream (Bui) and downstream (Bamboi) of the dam, with samples taken pre‐ and postimpoundment during the study period. Canonical Correspondence Analysis (CCA) was used to trace temporal plankton community changes and to examine the relationships between species composition and physicochemical variables. The relative abundance of some phytoplankton species such as Anabaena sp., Planktothrix sp. and Scenedesmus sp. was directly correlated to nitrates. CCA indicated that physicochemical variables explained 41–64% of zooplankton and 8–12% of phytoplankton variation. Hence, there were correlations between environmental variables and the structure of plankton assemblages. This feature should therefore be used for bio‐monitoring of environmental variables of the river by the Bui Power Authority to ensure protection of the aquatic biota downstream of the Bui dam.  相似文献   

6.
【目的】通过研究林地转型耕地对土壤编码碱性磷酸酶基因的细菌群落丰度、多样性和结构的影响,为丘陵区耕地长期施肥下农田土壤微生物多样性丧失的影响机制以及未来的退耕还林过程中土壤微生物多样性的提升和土地可持续利用研究提供一些基础数据和技术支撑。【方法】采用实时荧光定量PCR (real-time quantitative PCR,qPCR)和高通量测序技术解析土壤编码碱性磷酸酶基因的细菌群落的丰度、多样性和结构变化,并耦合土壤化学性质分析,明确土壤编码碱性磷酸酶基因的细菌群落丰度和多样性与土壤化学性质的关系以及关键的驱动因子。【结果】林地垦殖为农田后,长期施肥导致土壤酸化,pH从5.58降至4.72,而土壤速效磷则从2.49 mg/kg增至49.3 mg/kg。相应地,耕地土壤编码碱性磷酸酶基因的细菌群落的丰度和Shannon指数均显著低于林地。基于编码碱性磷酸酶的phoD基因(alkaline phosphatase-encoding gene)序列的物种分类表明,丘陵区土壤编码碱性磷酸酶基因的细菌群落的优势门为变形菌门(Proteobacteria)、蓝藻门(Cyanobacteria)、浮霉菌门(Planctomycetes)、放线菌门(Actinobacteria)、厚壁菌门(Firmicutes)和疣微菌门(Verrucomicrobia),其中林地土壤的蓝藻门的相对丰度显著高于耕地。耕地土壤的慢生根瘤菌属(Bradyrhizobium)和芽孢杆菌属(Bacillus)的相对丰度显著高于林地,而中慢生根瘤菌属(Mesorhizobium)、假单胞菌属(Pseudomonas)、Chlorogloea属、Gemmata属、Phormidesmis属和Pseudolabrys属的相对丰度显著低于林地。土壤编码碱性磷酸酶基因的细菌群落结构因林地转型耕地而发生显著改变。phoD基因丰度和Shannon指数与pH显著正相关,而与总磷、速效磷、硝态氮和铵态氮均显著负相关,其中土壤速效磷是这些影响因素中影响最强烈的,长期施用无机磷肥导致含碱性磷酸酶的土壤细菌群落对有机磷分解的能力退化。【结论】林地转型耕地加之长期施肥改变了土壤pH和速效磷,并在其他理化因子的协同驱动下,导致土壤编码碱性磷酸酶基因的细菌群落丰度、多样性和结构的显著变化。  相似文献   

7.
8.
任辉  田恬  杨宇峰  王庆 《生态学报》2017,37(22):7729-7740
随着城市生态健康理念的提出,城市河涌生态健康也受到了前所未有的关注。为更好的了解河涌的水环境和浮游植物现状,于2015年3月至2016年2月对珠江口南沙河涌8个站位水环境和浮游植物群落结构进行调查。结果显示:共发现浮游植物164种(属),隶属7门73属,其中以绿藻种类最多,达33属79种,占48.17%;硅藻次之,17属41种,占25%。优势种为梅尼小环藻(Cyclotella meneghiniana)、假鱼腥藻属(Pseudanabaena sp.)和小球藻(Chlorella vulgaris)。浮游植物细胞密度在0.19×10~6—101.34×10~6个/L内变动,呈现单峰型,在4月发生拟菱形弓形藻(Schroederia nitzschioides)水华,14涌密度高达87.38×10~6个/L,随后因强降雨细胞密度骤降。浮游植物群落的季节演替基本符合PEG(Plankton Ecology Group)模型,从冬季的硅藻,到春夏季的绿藻,再到秋季的蓝藻。One-way ANOVA分析显示,各月份浮游植物细胞密度差异显著(P0.01)。Pearson相关性分析表明绿藻细胞丰度变化主导着浮游植物总丰度的变化(r=0.454,P0.01)。运用Margalef物种丰富度指数、Shannon物种多样性指数、Pielou均匀度指数对水体进行评价表明,调查水体呈中度污染。相关加权营养状态指数表明,河涌全年处于富营养化状态。浮游植物聚类分析表明,时间异质性较高,总体相似性较低;空间上相似性较高,人为活动可能是导致空间差异的关键因子。冗余分析显示,叶绿素a、溶解氧、盐度、水温、总氮和p H与浮游植物群落结构关系最为密切。p H对硅藻门浮游植物影响较大,碱性条件适宜直链藻生长,春季水华形成的驱动因子是盐度、温度和总氮。  相似文献   

9.
Temporal patterns of species abundance, although less well-studied than spatial patterns, provide valuable insight to the processes governing community assembly. We compared temporal abundance distributions of two communities, phytoplankton and fish, in a north temperate lake. We used both 17 years of observed relative abundance data as well as resampled data from Monte Carlo simulations to account for the possible effects of non-detection of rare species. Similar to what has been found in other communities, phytoplankton and fish species that appeared more frequently were generally more abundant than rare species. However, neither community exhibited two distinct groups of “core” (common occurrence and high abundance) and “occasional” (rare occurrence and low abundance) species. Both observed and resampled data show that the phytoplankton community was dominated by occasional species appearing in only one year that exhibited large variation in their abundances, while the fish community was dominated by core species occurring in all 17 years at high abundances. We hypothesize that the life-history traits that enable phytoplankton to persist in highly dynamic environments may result in communities dominated by occasional species capable of reaching high abundances when conditions allow. Conversely, longer turnover times and broad environmental tolerances of fish may result in communities dominated by core species structured primarily by competitive interactions.  相似文献   

10.
基于2003-2012年太湖竺山湖和西部沿岸区水体理化指标与浮游植物丰度的逐月监测数据,分析了两个湖区氮磷营养盐状态和浮游植物丰度以及浮游植物主要类群的年际变化趋势及季节变化特征,探讨了浮游植物群落变化与水温及营养盐指标间的关系。结果表明:10年间两个湖区氮磷营养盐浓度总体呈下降趋势,以竺山湖TN、NH3-N浓度和西部沿岸区NO3-N浓度下降最为显著;浮游植物丰度总体呈上升趋势,蓝藻在群落结构中日益占据绝对优势;季节变化上,氮营养盐浓度表现为春冬季节高于夏秋季节,TP浓度和浮游植物丰度呈相反的变化趋势。Pearson相关分析显示,水温、NH3-N浓度和TN/TP是影响蓝藻丰度及其在浮游植物群落中所占比例的主要因素。在温度和营养盐结构的共同作用下,10年间两个湖区蓝藻水华暴发时间逐渐提前,而消退时间逐渐滞后,水华持续时间逐年上升。在全球变暖背景下,太湖水华治理需执行更加严格的氮磷限制阈值,且在重污染的西北湖区控磷依然是关键。  相似文献   

11.
磷是浮游植物生长的必要元素,也是调控水体富营养化的重要因子之一。在无机磷缺乏的水域,能够有效利用有机磷的藻类有可能成为浮游植物群落的优势种。为了研究有机磷对浮游植物群落结构演替的影响,分别从3个水库采集表层水样,西陂水库(硅藻70.3%,甲藻19.1%,绿藻9.3%)、山美水库(硅藻31.3%,甲藻59.2%,绿藻3.5%)、三十六脚湖(硅藻43.1%,甲藻50.5%,绿藻5.0%),选用有机磷单磷酸腺苷(Adenosine monophosphate,AMP)作为磷源进行实验室模拟实验,并与无机磷(NaH_2PO_4·2H_2O)作为磷源实验组做同步对比,探讨有机磷源条件下浮游植物竞争及群落结构演替规律。结果显示:AMP培养20 d后,西陂水库、山美水库和三十六脚湖的浮游植物生物量分别增加了6.5倍,2.1倍和1.9倍,浮游植物群落结构都演替为以甲藻门和绿藻门为优势藻,所占比例分别为81.8%和16.7%、55.2%和33.5%、73.2%和24.3%,其中西陂水库甲藻门拟多甲藻对有机磷AMP的利用能力强,其所占比例达到81.8%。表明有机磷AMP能有效地促进甲藻门拟多甲藻属的增殖,进而改变水体浮游植物群落结构。  相似文献   

12.
13.
To study how archaeal community responds to environmental changes, we investigated archaeal community structures in waters of three Tibetan saline lakes in northwestern China (Gahai, Xiaochaidan, and Charhan Lakes) with 16S rRNA gene phylogenetic analysis. Temperature, pH, and water chemistry (major anions and cations) of the lakes were measured. Three archaeal clone libraries were constructed with a total of 297 sequences. Incorporating our previous data obtained from other lakes on the Tibetan Plateau, we performed statistical analyses to identify dominant environmental parameters that could account for the observed variations in archaeal community structure. We concluded that salinity and water chemistry (Na and bicarbonate concentration in particular) played an important role in shaping archaeal community. In particular, the relative abundance of archaeal 16S rRNA genes affiliated with the Halobacteriales of the Euryarchaeota increased with salinity, whereas that of crenarchaeotal 16S rRNA gene sequences showed the opposite trend. Crenarchaeotal 16S rRNA gene sequences were retrieved from lake waters with salinity up to 28.3%. These results have important implications for our understanding of response of archaeal community to environmental changes in high-altitude lake ecosystems.  相似文献   

14.
The phytoplankton lake community model PROTECH (Phytoplankton RespOnses To Environmental CHange) was applied to the eutrophic lake, Esthwaite Water (United Kingdom). It was validated against monitoring data from 2003 and simulated well the seasonal pattern of total chlorophyll, diatom chlorophyll and Cyanobacteria chlorophyll with respective R2‐values calculated between observed and simulated of 0.68, 0.72 and 0.77 (all P<0.01). This simulation was then rerun through various combinations of factorized changes covering a range of half to double the flushing rate and from ?1 to +4 °C changes in water temperature. Their effect on the phytoplankton was measured as annual, spring, summer and autumn means of the total and species chlorophyll concentrations. In addition, Cyanobacteria mean percentage abundance (%Cb) and maximum percentage abundance (Max %Cb) was recorded, as were the number of days that Cyanobacteria chlorophyll concentration exceed two World Health Organization (WHO) derived risk thresholds (10 and 50 mg m?3). The phytoplankton community was dominated in the year by three of the eight phytoplankton simulated. The vernal bloom of the diatom Asterionella showed little annual or seasonal response to the changing drivers but this was not the case for the two Cyanobacteria that also dominated, Anabaena and Aphanizomenon . These Cyanobacteria showed enhanced abundance, community dominance and increased duration above the highest WHO risk threshold with increasing water temperature and decreasing flushing rate: this effect was greatest in the summer period. However, the response was ultimately controlled by the availability of nutrients, particularly phosphorus and nitrogen, with occasional declines in the latter's concentration helping the dominance of these nitrogen‐fixing phytoplankton.  相似文献   

15.
Despite extensive research for several decades, there remains a lack of understanding of the processes that determine the dynamics of natural plant communities. In this paper some current concepts in vegetation dynamics are reviewed and an attempt is made to provide a perspective of the way in which data for molecular diversity might be used to help in developing an understanding of population processes. It is proposed that data from assessments of general population diversity, and specific ecophysiological traits can be used to assess the potential for individual species to compete and substitute for each other in a community.Keywords: Natural plant communities, dynamics, molecular diversity, population diversity, ecophysiological traits.   相似文献   

16.
Diagnostic photopigment analysis is a useful tool for determining the presence and relative abundance of algal groups in natural phytoplankton assemblages. This approach is especially useful when a genus has a unique photopigment composition. The toxic dinoflagellate Karenia brevis (Davis) G. Hansen & Moestrup comb. nov. shares the diagnostic pigment gyroxanthin‐diester with only a few other dinoflagellates and lacks peridinin, one of the major diagnostic pigments of most dinoflagellate species. In this study, measurements of gyroxanthin‐diester and other diagnostic pigments of K. brevis were incorporated into the initial pigment ratio matrix of the chemical taxonomy program (CHEMTAX) to resolve the relative contribution of K. brevis biomass in mixed estuarine phytoplankton assemblages from Florida and Galveston Bay, Texas. The phytoplankton community composition of the bloom in Galveston Bay was calculated based on cell enumerations and biovolumetric measurements in addition to chl a‐specific photopigment estimates of biomass (HPLC and CHEMTAX). The CHEMTAX and biovolume estimates of the phytoplankton community structure were not significantly different and suggest that the HPLC–CHEMTAX approach provides reasonable estimates of K. brevis biomass in natural assemblages. The gyroxanthin‐diester content per cell of K. brevis from Galveston Bay was significantly higher than in K. brevis collected from the west coast of Florida. This pigment‐based approach provides a useful tool for resolving spatiotemporal distributions of phytoplankton in the presence of K. brevis blooms, when an appropriate initial ratio matrix is applied.  相似文献   

17.
Pest outbreaks, harmful algal blooms and population collapses are extreme events with critical consequences for ecosystems. Therefore, understanding the ecological mechanisms underlying these extreme events is crucial. We evaluated theoretical predictions on the size scaling and variance of extreme population abundance by combining (i) the generalized extreme value (GEV) theory and (ii) the resource-limited metabolic restriction hypothesis for population abundance. Using the phytoplankton data from the L4 station in the English Channel, we showed a negative size scaling of the expected value of maximal density, whose confidence interval included the predicted metabolic scaling (α = −1) supporting theoretical predictions. The role of resources and temperature in the distribution of the size–abundance pattern and residuals was well characterized by the GEV distribution. This comprehensive modelling framework will allow to elucidate community structure and fluctuations and provide unbiased return times estimates, thereby improving the prediction accuracy of the timing of the population outbreaks.  相似文献   

18.
Photosynthetic euglenids acquired chloroplasts by secondary endosymbiosis, which resulted in changes to their mode of nutrition and affected the evolution of their morphological characters. Mapping morphological characters onto a reliable molecular tree could elucidate major trends of those changes. We analyzed nucleotide sequence data from regions of three nuclear‐encoded genes (nSSU, nLSU, hsp90), one chloroplast‐encoded gene (cpSSU) and one nuclear‐encoded chloroplast gene (psbO) to estimate phylogenetic relationships among 59 photosynthetic euglenid species. Our results were consistent with previous works; most genera were monophyletic, except for the polyphyletic genus Euglena, and the paraphyletic genus Phacus. We also analyzed character evolution in photosynthetic euglenids using our phylogenetic tree and eight morphological traits commonly used for generic and species diagnoses, including: characters corresponding to well‐defined clades, apomorphies like presence of lorica and mucilaginous stalks, and homoplastic characters like rigid cells and presence of large paramylon grains. This research indicated that pyrenoids were lost twice during the evolution of phototrophic euglenids, and that mucocysts, which only occur in the genus Euglena, evolved independently at least twice. In contrast, the evolution of cell shape and chloroplast morphology was difficult to elucidate, and could not be unambiguously reconstructed in our analyses.  相似文献   

19.
Although the dinophytes generally possess red‐algal‐derived secondary plastids, tertiary plastids originating from haptophyte and diatom ancestors are recognized in some lineages within the Dinophyta. However, little is known about the nuclear‐encoded genes of plastid‐targeted proteins from the dinophytes with diatom‐derived tertiary plastids. We analyzed the sequences of the nuclear psbO gene encoding oxygen‐evolving enhancer protein from various algae with red‐algal‐derived secondary and tertiary plastids. Based on our sequencing of 10 new genes and phylogenetic analysis of PsbO amino acid sequences from a wide taxon sampling of red algae and organisms with red‐algal‐derived plastids, dinophytes form three separate lineages: one composed of peridinin‐containing species with secondary plastids, and the other two having haptophyte‐ or diatom‐derived tertiary plastids and forming a robust monophyletic group with haptophytes and diatoms, respectively. Comparison of the N‐terminal sequences of PsbO proteins suggests that psbO genes from a dinophyte with diatom‐derived tertiary plastids (Kryptoperidinium) encode proteins that are targeted to the diatom plastid from the endosymbiotic diatom nucleus as in the secondary phototrophs, whereas the fucoxanthin‐containing dinophytes (Karenia and Karlodinium) have evolved an additional system of psbO genes for targeting the PsbO proteins to their haptophyte‐derived tertiary plastids from the host dinophyte nuclei.  相似文献   

20.
Global climate change scenarios predict lake water temperatures to increase up to 4°C and extreme weather events, including heat waves and large temperature fluctuations, to occur more frequently. Such changes may result in a reorganization of the plankton community structure, causing shifts in diversity and structure toward a community dominated by fewer species that are more adapted to endure warmer and irregular temperature conditions. We designed a long‐term (8 months) mesocosm experiment to explore how ambient water temperature (C: control), induced increased temperature (T: +4°C), and temperature fluctuations (F: ±4°C relative to T) change phytoplankton phenology, taxonomical diversity, and community structure, and how such changes affected zooplankton abundance and composition. Synthesis. Our results show that T and F relative to C significantly decreased phytoplankton diversity. Moreover, there was a clear effect of the temperature treatments (T and F) on phytoplankton size structure that resulted in a significantly lower growth of large species (i.e., large Chlorophyta) compared to C. Decreased diversity and evenness in the T and F treatments pushed the community toward the dominance of only a few phytoplankton taxa (mainly Cyanobacteria and Chlorophyta) that are better adapted to endure warmer and more irregular temperature conditions. The observed shift toward Cyanobacteria dominance may affect trophic energy transfer along the aquatic food web.  相似文献   

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