Study on the mycoflora of Egyptian soils

Fifty genera and 155 species, in addition to three varieties of Aspergillus nidulans, were isolated from 100 soil samples collected from different localities in Egypt. Aspergillus (33 species in addition to 3 varieties of A. nidulans), Penicillium (46 species), Fusarium (6 species) and Mucor (4 species) were of high occurrence, from which A. niger, A. fumigatus, A. terreus, M. racemosus, P. notatum, P. chrysogenum and A. flavus were dominant. Five genera were of moderate occurrence and these were Humicola, Myrothecium, Rhizopus, Cochliobolus and Alternaria. Fourteen genera were of low occurrence namely, Cunninghamella, Chaetomium, Stachybotrys, Cladosporium, Syncephalastrum, Paecilomyces, Trichoderma, Scolecobasidium, Circinella, Curvularia, Ulocladium, Botryotrichum, Sepedonium and Gliocladium. Twenty-seven genera were of rare occurrence.Fourteen species were of moderate occurrence and these were A. sydowii, M. verrucaria, P. funiculosum, A. versicolor, H. grisea, F. oxysporum, A. nidulans, F. moniliforme, A. alternata, F. solani, M. hiemalis, A. candidus, R. nigricans and A. ochraceus. The remaining species were of low or rare occurrence in soils tested.Comparison between the present results and those of others showed that there is no fungal flora characteristic cultivated soils.     

Mycoflora and mycotoxin-producing fungi of air-dust particles from Egypt

Using the dilution-plate method, 27 genera and 64 species were collected from 20 air-dust samples on glucose — (24 genera and 57 species) and cellulose — (21 genera and 45 species) Czapek's agar at 28 °C. There are basic similarities between the mycoflora of air-dust on the two media and the most prevalent species were Aspergillus niger, A. flavus, A. ochraceus, A. terreus, A. versicolor, Penicillium chrysogenum, P. funiculosum, Alternaria alternata, Cladosporium herbarum, Fusarium oxysporum, Rhizopus stolonifer and Trichoderma viride. Chaetomium globosum, Stachybotrys chartarum, Humicola grisea and Arthrobotrys oligospora were common only on cellulose agar plates.Extracts of mycelium from 25 isolates were tested with brine schrimp (Artemia salina); of these 23 displayed varying degrees of toxicity. Thin layer Chromatographic analysis of 12 isolates of Aspergillus flavus revealed that 4 strains were producing detectable aflatoxin. Zearalenone production was noted for 3 out of 5 strains of Fusarium oxysporum and 2 out of 5 strains of F. solani.     

Survey of the mycoflora of barley grains in Egypt

The fungi of 40 samples of barley grains collected from Upper Egypt were estimated using the dilution- and the grain-plate methods. 33 genera and 109 species, in addition to 2 varieties of Aspergillus nidulans, one variety of Aspergillus flavus and one variety of Penicillium cyclopium were identified. The spectrum of fungal genera and species collected by the grain-plate method (29 genera and 94 species+3 varieties) was broader than by the dilutionplate method (27 genera and 71 species+3 varieties), but the order of frequency of occurrence of fungal genera and species was basically similar in the two methods. The most frequent genera were Aspergillus (25 species+3 varieties), Penicillium (32 species+1 variety), Rhizopus (2 species), Alternaria (2 species), Fusarium (6 species) and Drechslera (5 species) and were represented (as assayed by the grainplate method) in 100 %, 77.5 %, 85 % 62,5 %, 60 % and 52.5 % of the samples constituting 60.4 %, 10.2 %, 7.7 %, 3.7 %, 5 % and 2.3 % of the gross total count of fungi respectively. From the preceding genera A. niger, A. fumigatus, A. flavus, A. sydowii, P. notatum, P. citrinum, F. oxysporum, F. moniliforme, F. solani, R. stolonifer, A. alternata and D. spicifera were the most frequent.     

Rhizosphere and phyllosphere fungi of four fern plants growing in Saudi Arabia

Seventy-eight species in addition to 1 variety of A. flavus belonging to 31 genera were collected from the rhizosphere (55 species + 1 variety and 24 genera) and phyllosphere (59 species and 22 genera) of Adiantum capillus-veneris, Ceterach officinarum, Asplenium filare and Cheilanthes catanensis.In the rhizosphere, the most common genera were Aspergillus, Penicillium, Fusarium, Mucor and yeasts. In the phyllosphere, the most prevalent fungi were Cladosporium herbarum, C. sphaerospermum, Alternaria alternata, Drechslera spicifera, Aspergillus spp., Penicillium spp., Cephalosporium roseo-griseum, Myrothecium verrucaria, Mucor racemosus and yeasts.     

The mycoflora of peanuts in Egypt

Twenty-six genera and Sixty-six species, in addition to two varieties of Aspergillus nidulans and one variety of Humicola grisea were isolated from 80 peanut seed (uncovered or covered within shell at the time of sampling) samples and 40 samples of shells collected from different places in Egypt.At 28 °C, the broadest spectrum of genera and species was recorded in the shells (21 genera and 53 species), followed by the naked seeds (16 genera and 38 species) and the covered seeds (17 genera and 33 species). Aspergillus and Penicillium were regularly the most common genera in the three substrates. A. niger, A. fumigatus, A. flavus A. terreus, A. ochraceus and P. funiculosum were generally the most common fungal species recovered from the three substrates. A. flavus was represented in 80%, 60% and 80% of the samples constituting 16.1%, 8.4% and 27.2% of the total count of fungi of the shells, covered and uncovered seeds respectively.At 45 °C, nine genera and sixteen species were collected of which Aspergillus fumigatus was extremely dominant in the three substrates, followed by A. terreus and A. niger. Penicillium was completely eliminated.     

Thermophilic and thermotolerant fungi in the desert soils of Saudi Arabia

Forty-eight thermophilic and thermotolerant species in addition to 5 varieties which belong to 24 genera were collected from desert soils in Saudi Arabia on glucose-(22 genera and 38 species + 5 varieties), cellulose-(15 genera and 27 species + 4 varieties) and 40% sucrose-Czapek's agar plates (13 genera and 26 species + 4 varieties) at 45 °C. The most frequent species were as follows: Aspergillus fumigatus, A. terreus, Humicola grisea var. thermoidae and Chaetomium thermophile var. copropile on glucose-; A. fumigatus, C. thermophile var. copropile, A. terreus, A. nidulans and C. thermophile var. dissitum on cellulose-; and A. fumigatus and A. terreus on 40% sucrose-Czapek's agar plates. Sixteen species and 4 varieties were particularly thermophilic and these were A. fumigatus, H. grisea var. thermoidae, H. insolens, H. lanuginosa, C. thermophile var. copropile, C. thermophile var. dissitum, C. virginicum, M. pusillus, S. thermophila, S.? pulverulentum, T. thermophilus, T.? emersoni, T. aurantiacus, T. thermophila, M. pulchella var. sulfurea, M. albomyces, ?A. terrestris, C. pruinosum, T. thermophila and P. thermophila. The remaining species showed different degrees of thermotolerant (32 species + 1 variety).     

Mycoflora and mycotoxins of peanut (Arachis hypogaea L.) seeds in Egypt. III. Cellulose-decomposing and mycotoxin-producing fungi

From 40 peanut seed samples collected in Egypt, forty-three species and one variety of fungi, belonging to 16 genera, were collected. The most dominant genera were Aspergillus (11 species + one variety), Penicillium (11 species) and Fusarium (4 species). From the preceding genera A. fumigatus, A. flavus, A. niger, P. chrysogenum and F. oxysporum were the most frequent species.Forty-nine isolates belonging to 12 species and one variety were tested for production of mycotoxins, after growth on liquid medium containing two carbon sources (sucrose or cellulose). Thin layer chromatographic analysis revealed that the quality and quantity of mycotoxins was higher on sucrose than cellulose. Mycotoxins identified were aflatoxins B₁, B₂, G₁ & G₂, citrinin; fumagillin; diacetoxyscirpenol T-2 toxin; satratoxin H; and zearalenone.     

Coprophilous fungi of the horse

A total of 1267 microfungi, including 35 Myxomycetes, were recorded from the fecal samples of the 60 horses; of these 395 were found on 20 saddle-horse feces, 363 on 20 race-horses and 509 on 20 working-horses. Eighty two species representing 53 genera were recorded; of these 7 were Zygomycetes, 18 Ascomycetes, 1 Basidiomycetes and 25 Fungi Imperfecti: 2 Myxomycetes. Common coprophilous fungi are in decreasing orderPilobolus kleinii, Saccobolus depauperatus, Mucor hiemalis, Lasiobolus ciliatus, Podospora curvula, Petriella guttulata, M. circinelloides, Coprinus radiatus, Dictyostelium mucoroides, Sordaria fimicola, C. miser, C. stercorarius, Acremonium sp., Coprotus granuliformis, Graphium putredinis, Iodophanus carneus, Chaetomium murorum, Podospora communis, P. inaequalis, P. setosa, Saccobolus versicolor andCladosporium cucumerinum. Species ofMyrothecium verrucaria, Actinomucor elegans, Kernia nitida, Spiculostilbella dendritica andMucorparvispora were found exclusively in working-horses feces.Badhamia sp., Anixiopsis stercoraria, Echinobotryum state ofD. stemonitis, Geotrichum candidum andOidiodendron sp. were found only in saddle-horses feces.Chlamidomyces palmarum andPhilocopra sp. were found exclusively in race-horses feces.Notes on infrequent or interesting fungi includeThamnostylum piriforme, Phialocephala dimorphospora, Rhopalomyces elegans andSpiculostilbella dendritica.     

Contribution to the fungal flora of cereal grains in Egypt

30 genera and 77 species, in addition to 4 varieties were isolated from 25 samples of each of barley, wheat, maize and sorghum grains collected from different places in Egypt. The broadest spectrum of genera and species was recorded in wheat (25 genera and 59 species + 4 varieties) followed by barley (21 genera and 52 species + 2 varieties), sorghum (14 genera and 33 species + 2 varieties) and maize grains (11 genera and 29 species + 2 varieties). Aspergillus, Fusarium, Penicillium and Rhizopus were the most common genera in the four grains, except maize where Penicillium emerged in low frequency. Aspergillus was the main component of the fungal flora of the four grains and contributed 79–94.4% of the gross total count of fungi. From the preceding genera A. niger, A. flavus, A. fumigatus, F. oxysporum, P. chrysogenum, P. corylophilum, P. notatum and R. stolonifer were the most frequent.     

Survey of the mycoflora of desert soils in Saudi Arabia

Thirty-four genera and 80 species in addition to one variety of A. nidulans were identified from 40 soil samples colleted from different places in desert of Saudi Arabia. More than forty-two species are new records from Saudi Arabian soils. Aspergillus and Penicillium contributed the greatest number of species (15 species + 1 variety and 13 species respectively).The most frequent genera were Aspergillus, Penicillium, Botryotrichum, and Ulocladium followed by Macrophomina, Rhizopus, Fusarium, Alternaria and Cladosporium from which A. fumigatus, A. terreus, A. niger, A. flavus, P. citrinum, P. corylophilum, B. atrogriseum, U. botrytis, M. phaseoli, R. stolnifer, F. moniliforme, A. alternata and C. herbarum were the most common.Comparison between the present results and those of the other studies showed that there is no fungal flora characteristic of desert soils of Saudi Arabia.     

Rhizosphere and rhizoplane fungi of Triticum vulgare cultivated in Saudi Arabia

131 species in addition to 7 varieties which belong to 40 genera were collected from the rhizosphere (36 genera and 120 species + 7 varieties) and rhizoplane (27 genera and 56 species + 2 varieties) of Triticum vulgare. More than 22 species and 3 varieties were not encountered previously from soils or other sources in Saudi Arabia.In the rhizosphere, Aspergillus and Penicillium contributed the broadest spectrum of species (26 species + 5 varieties; and 24 species, respectively). The most frequent fungi were Aspergillus niger, A. clavatus, A. flavus, A. terreus, A. carneus, Penicillium citrinum, P. notatum, P. chrysogenum and Fusarium solani. In the rhizoplane which is a more selective substratum for fungi than the rhizosphere, the picture of dominance became different and the most common fungi were Fusarium solani, F. oxysporum, F. moniliforme, Drechslera spicifera, Cephalosporium roseo-griseum, Stemphylium botryosum, Acremonium strictum and Rhizoctonia solani.     

Cellulose-decomposing fungi of desert soils in Saudi Arabia

Seventy-five species in addition to 5 varieties of cellulose-decomposing which belong to 27 genera were collected during this investigation. Aspergillus (12 species + 4 varieties), Alternaria (4 species), Stachybotrys (3 species + 1 variety), and Penicillium (12 species) were of high frequency of occurrence, of which A. fumigatus, A. niger, A. terreus, A. alternata, A. tenuissima, S. atra, P. citrinum and P. corylophilum were the most common. Six genera were of moderate frequency and these were Botryotrichum (2 species), Macrophomina (1 species), Drechslera (5 species), Ulocladium (4 species), Chaetomium (7 species) and Curvularia (4 species) of which B. atrogriseum, D. spicifera, D. sativus, Ubotrytis, C. spirale and C. lunata were the most prevalent. Five and twelve genera were recovered on cellulose-Czapek's agar plates in low and rare frequency of occurrence, respectively.     

Molecular characterization of fungal endophytes from Calotropis procera plants in Taif region (Saudi Arabia) and their antifungal activities

Fungal endophytes were isolated from the leaves of Calotropis procera (Apocynaceae) collected from Taif region (Saudi Arabia). Thirty-three different taxa were recovered. The overall foliar colonization rate was 35.1%. A total of 161 isolates were obtained and identified into 33 distinct operational taxonomic units based on the sequencing of the internal transcribed spacer regions of the rRNA gene. The most prevalent fungi were Aspergillus flavus, Chaetomium globosum, Cochliobolus lunatus, Fusarium dimerum, F. oxysporum, and Penicillium chrysogenum. A total of 161 isolates were tested for antifungal activities against four plant pathogenic fungi (Alternaria alternata, Fusarium oxysporum, Botrytis cinerea, and Pythium ultimum), of which 33 isolates showed antifungal activity against at least one plant pathogenic fungi. Four isolates of Chaetomium globosum and three isolates of Myrothecium verrucaria showed the strongest antifungal activity. This study reported the occurrence of a much wider spectrum of fungi, when compared with previous work. Also, it confirmed the variation of different isolates from the same species in terms of antifungal activity.     

Cellulose-decomposing fungi of salt marshes in Egypt

Seventy-five species and three varieties which belong to thirty-four genera were identified from 74 soil samples collected from salt marshes in Egypt. The most frequent fungi wereAspergillus fumigatus, Aspergillus niger, Cladosporium herbarum andAlternatia alternata, followed byAspergillus terreus,Curvularia spicifera andPenicillium notatum. Six genera were of moderate occurrence:Penicillium, Futarium, Curvularia, Rhizopus, Stachybotrys, andChaetomium. Five genera were of low occurrence:Paecilomyces, Oephalosporium, Epicoccum, Mucor andMyrothecium.     

Interaction between pathogenic and saprobic fungi isolated from soybean roots and seeds

A variety of interactions was recorded in culture between 11 saprobic fungi isolated from soybean (Glycine max) roots and seeds and the soybean pathogens Cercospora sojina, Colletotrichum truncatum, Macrophomina phaseolina, Phomopsis sojae, and Septoria glycines. The most active saprobes were Aspergillus terreus, Chaetomium cupreum, Epicoccum nigrum, Gliocladium roseum, Myrothecium roridum, Penicillium thomii, and Trichothecium roseum. Hyphal lysis of several fungal pathogens by Acremonium sp., C. cupreum and P. thomii was recorded perhaps because of parasitism by G. roseum and T. roseum. In greenhouse studies, seeds coated with G. roseum, P. thomii, and T. harzianum emerged significantly (P=0.05) more than those coated with A. terreus and the control. In field studies, seeds coated with a conidial suspension of A. terreus, G. roseum, P. thomii or Trichoderma harzianum produced a significantly greater stand than the control. The area of cotyledons covered with lesions caused by C. truncatum was significantly less on seeds coated with G. roseum, P. thomii and T. harzianum than the control.     

Endophytic Fungal Flora from Roots and Fruits of an Indian Neem Plant <Emphasis Type="Italic">Azadirachta indica</Emphasis> A. Juss., and Impact of Culture Media on their Isolation

Azadirachta indica A. Juss. (neem), native to India, is well known worldwide for its insecticidal and ethanopharmacological properties. Although endophytic microbes are known from this plant as only leaves and stems were the subjects of past reports. Now, a variety of procedures and a number of different media were used to isolate the maximum number of endophytic fungi from unripe fruits and roots. A total of 272 isolates of 29 filamentous fungal taxa were isolated at rate of 68.0% from 400 samples of three different individual trees (at locations-Az1, Az2, Az3). Mycological agar (MCA) medium yielded the highest number of isolates (95, with a 14.50% isolation rate) with the greatest species richness. Mycelia Sterilia (1, 2, 3) accounted for 11.06%, Coelomycetes 7.25%, while Hyphomycetes showed the maximum number of representative isolates (81.69%). Mycelia-Sterilia (1, 2, 3), based on their 5.8S ITS 1, ITS2 and partial 18S and 28S rDNA sequences were identified as Fusarium solani (99%), Chaetomium globosum (93%) and Chaetomium globosum (93%) respectively. Humicola, Drechslera, Colletotrichum, and Scytalidium sp. were some of the peculiar fungal endophytes recovered from this plant.     

Keratinolytic and keratinophilic fungi in the soils of Papua New Guinea

A study was made of soil samples collected during an expedition to the Highlands of Papua New Guinea. Fungi were isolated from the samples by the method of hair baiting (To-Ka-Va). Of the 33 species isolated, about half showed keratinolytic activity. Such activity is previously unreported for Mucor hiemalis f. hiemalis, Myrothecium roridum, Paecilomyces carneus, P. marquandii, Penicillium brevicompactum, Rhinocladiella mansonii and Verticillium lecanii. The species most active keratinolytically were Chrysosporium an. Arthroderma cuniculi, C. an. A. curreyi, C. indicum, Myceliophthora vellerea and Trichophyton ajelloi. The spectrum of fungi with keratinolytic activity isolated from the different sites differed considerably according to the frequency of use by man, heaviest use being correlated with greatest activity. The pH of the soil (varying from 5.8–7.5) had little influence on the type of such fungi isolated.     

Mycoflora and mycotoxins of peanut (Arachis hypogaea L.) seeds in Egypt. 1-sugar fungi and natural occurrence of mycotoxins

Sixty-four species and 2 varieties which belong to nineteen genera of fungi were identified from 40 peanut seed samples collected from different places in Egypt by using a dilution-plate method on glucose-Czapek's medium. The most frequent genera were Aspergillus (21 species & 2 varieties), Penicillium (16 species) and Fusarium (6 species). A. flavus, A. fumigatus, A. niger, P. chrysogenum and F. oxysporum were the most common fungal species. Forty seven percent of the samples proved to be toxic to brine shrimp (Artemia salina) larvae. Thin-layer Chromatographic analysis revealed that peanuts were contaminated by aflatoxins (11 samples), thrichothecene-toxins (10 samples), zearalenone (one sample) and citrinin (one sample). We believe that this is the first report of the natural occurrence of zearalenone and trichothecene-toxins in peanuts.     

Keratinophilic fungi and other moulds associated with air-dust particles from Egypt

One-hundred and eleven species and three species varieties belonging to 39 genera were collected from 50 dust samples on the five media used at 28°C. Using the hair-baiting technique with horse hair, 10 species ofChrysosporium were isolated:C. asperatum, C. state ofArthroderma tuberculatum, C. indicum, C. inops, C. keratinophilum, C. merdarium, C. pannorum, C. queenslandicum, C. tropicum andC. xerophilum. True dermatophytes were isolated:Trichophyton verrucosum andTrichophyton sp. Also, numerous fungi tolerating high levels of cycloheximide were encountered, such as members ofAcremonium, Aspergillus andPenicillium. On plates of glucose or cellulose Czapek-Dox agar (free from sucrose) the most frequent fungi were:Alternaria alternata, Aspergillus flavus, A. flavus var.columnaris, A. fumigatus, A. niger, A. ochraceus, A. sydowii, A. terreus, Chaetomium globosum, Cladosporium herbarum, Emericella nidulans, Fusarium oxysporum, Mucor hiemalis, Penicillium chrysogenum, P. oxalicum, Scopulariopsis brevicaulis andUlocladium atrum. On plates of 50% sucrose or 10 and 20% NaCl-Czapek's agar, some interesting species were frequently encountered:Eurotium amstelodami, E. chevalieri, E. halophilicum, E. montevidensis, E. repens, E. rubrum andScopulariopsis halophilica. The isolated, fungi have been tested for osmophilicity and halophilicity, they showed different rates of growth on sucrose and sodium chloride-Czapek's medium of various osmotic potential.     

Mycoflora of bean,broad bean,lentil, lupine and pea seeds in Saudi Arabia

Using the seed-plate method on glucose-Czapek's agar at 28 °C (±2 °C), 24 genera and 60 species in addition to two varieties were collected from bean, broad bean, lentil, lupine and pea seeds. The most frequent genera were Aspergillus (16 species + two varieties), Penicillium (14 species), Rhizopus (1 species) and Yeasts, followed by Fusarium (3 species), Mucor (4 species) and Drechslera (3 species). From the preceding genera, Aspergillus niger, A.flavus, Penicillium citrinum, Rhizopus stolonifer, Fusarium moniliforme or F. oxysporum, Mucor hiemalis or M. racemosus and Drechslera spicifera were the most prevalent species.