Development of a structured model for batch cultures of lactic acid bacteria

A combined stochastic-deterministic model able to predict the growth curve of microorganisms, from inoculation to death, is presented. The proposed model is based on the assumption that microorganisms can experience two different physiological states: non-proliferating and proliferating. The former being the physiological state of the cells right after their inoculation into the new extracellular environment; the latter the state of microorganisms after adaptation to the new medium. To validate the model, a Lactobacillus bulgaricus strain was tested in a medium at pH 4.6 at two different temperatures (42°C and 35°C). Curves representing the bacterial growth cycle were satisfactorily fitted by means of the proposed model. Moreover, due to the mechanistic structure of the proposed model, valuable quantitative information on the following was obtained: rate of conversion of non-proliferating cells into proliferating cells, growth and death rate of proliferating cells, and rate of nutrient consumption.     

Mathematical model of the interaction of components in a plant-rhizospheric microorganisms system at the higher level of carbon dioxide in atmosphere

A mathematical model describing the interaction of plants and rhizospheric microorganisms on complete mineral medium at a higher CO2 level in the atmosphere was constructed. The positive effect of CO2-enrichment on the system plant--rhizospheric microorganisms was shown. The effect of rhizospheric microorganisms on plant growth at normal and high level of carbon dioxide was demonstrated. It was shown that the biomass of plant in the system is smaller than the biomass of plant growing without microorganisms. It was experimentally demonstrated that a simple ecosystem wheat--Pseudomonas putida--artificial soil develops and functions differently than its individual constituents in the case of a wheat-artificial soil system. With unlimited nutrition and a higher CO2 level (0.06%), plants with roots inoculated with microorganisms have a smaller biomass than plants that were not inoculated with microorganisms.     

A cellular automata model for simulating fed-batch penicillin fermentation process

A cellular automata model to simulate penicillin fed-batch fermentation process(CAPFM)was established in this study,based on a morphologically structured dynamic penicillin production model,that is in turn based on the growth mechanism of penicillin producing microorganisms and the characteristics of penicillin fed-batch fermentation.CAPFM uses the three-dimensional cellular automata as a growth space,and a Moore-type neighborhood as the cellular neighborhood.The transition roles of CAPFM are designed based on mechanical and structural kinetic models of penicillin batch-fed fermentation processes.Every cell of CAPFM represents a single or specific number of penicillin producing microorganisms,and has various state.The simulation experimental results show that CAPFM replicates the evolutionary behavior of penicillin batch-fed fermentation processes described by the structured penicillin production kinetic model accordingly.     

Growth behavior of microorganisms using UV-Vis spectroscopy: Escherichia coli

Multiwavelength transmission spectra of microorganisms and cell suspensions consist of combined absorption and scattering phenomena resulting from the interaction of light with microorganisms or cells typically suspended in a nonabsorbing media. The distribution of intensities as a function of wavelength depends on the size, shape, and optical properties of the sample. The optical properties are functions of the chemical composition and the state of aggregation, or association, of the chromophoric groups contained in the microorganisms. This article explores the growth behavior of Escherichia coli from the perspective of multiwavelength UV-Vis spectroscopy. Experimentally, it is demonstrated that the spectral signatures of the microorganism evolve as a function of time. It is also demonstrated that the spectral changes observed during growth are consistent with data reported elsewhere. From the theoretical point of view, it is demonstrated that the spectral signatures can be adequately represented with an interpretation model based on light-scattering theory. The parameters from the interpretation model reflect changes in size and chemical composition known to take place in the microorganisms during growth.     

有机污染土壤电动修复过程中微生物的分布特征及模型构建

外加电场下土壤微生物会发生快速繁殖和定向迁移.本研究在十四烷污染土壤中不同位置投加十四烷高效降解菌,并施加1 V·cm^-1的单向直流电场,考察目标菌群的迁移分布及降解特征.结果表明:微生物受电渗析和电泳作用分别向阴极和阳极迁移,电渗析迁移量是电泳的3.5倍.同时,施加电场还会使土壤环境在空间上存在差异进而影响微生物生长,施加电场的土壤中微生物数量平均值为1.16×10⁸ CFU·g^-1 (6 d),是不施加电场处理组的2.3倍;S₂～S₄区是微生物的高效生长区域,电动30 d后,区域平均数量是阴阳极的2.8～3.5倍,是对照处理组的2.1倍.十四烷降解率与微生物数量呈显著正相关关系(r=0.895, P<0.05),最佳降解区域在近阴极区(S₄),可达94.6%.基于试验结果模拟,建立了环境因子修正的电动区域微生物分布模型.该模型结合电动激活和电动运移作用对土壤微生物的叠加影响,实现了定点投加微生物在电动过程中数量的分布模拟.研究结果可为外源功能菌在电动-微生物修复有机污染土壤中的高效引入提供理论依据.     

Estimation of vaginal probiotic lactobacilli growth parameters with the application of the Gompertz model

Lactobacilli are widely described as probiotic microorganisms used to restore the ecological balance of different animal or human tracts. For their use as probiotics, bacteria must show certain characteristics or properties related to the ability of adherence to mucosae or epithelia or show inhibition against pathogenic microorganisms. It is of primary interest to obtain the highest biomass and viability of the selected microorganisms. In this report, the growth of seven vaginal lactobacilli strains in four different growth media and at several inoculum percentages was compared, and the values of growth parameters (lag phase time, maximum growth rate, maximum optical density) were obtained by applying the Gompertz model to the experimental data. The application and estimation of this model is discussed, and the evaluation of the growth parameters is analyzed to compare the growth conditions of lactobacilli. Thus, these results in lab experiments provide a basis for testing different culture conditions to determine the best conditions in which to grow the probiotic lactobacilli for technological applications.     

Coexistence of photosynthetic microorganisms with growth rates depending on the spectral quality of light

A new equation for the growth rate of photosynthetic microorganisms is derived. It is based on a series formulation of the mechanism of photosynthesis and it has the form of a functional of the spectral qualities of light. Using this functional to model their growth it is shown that populations of photosynthetic microorganisms can coexist in the same homogeneous environment even though they compete for the available light.     

The dynamics of the macromolecular composition of biomass

The biomass composition of microorganisms depends on the growth conditions. This study explores whether a two-component model can explain how the elemental and macromolecular composition of the biomass of bacteria varies with the specific growth rate. The model describes the rates at which microorganisms assimilate substrates into reserves and utilize reserves for maintenance and growth. Crucial model assumptions are that biomass consists of reserves and structure and that each of these components has an invariant composition. The composition of biomass can vary when the ratio between reserves and structure varies. Literature data on the macromolecular composition of Escherichia coli, cultivated on various substrates, show that the protein, RNA and DNA content of biomass follow a distinctive trend when plotted as a function of the dry-weight-specific growth rate. This observation leads to the proposition that the macromolecular composition of E. coli depends directly on the growth rate, and only indirectly on the carbon- and energy-source used as substrate. We show that the variation of the macromolecular composition of E. coli over its entire range of growth rates can be described with invariant macromolecular compositions of the reserve and structural components of biomass. The model is also applied to our data on a succinate-limited continuous culture of Paracoccus denitrificans.     

Computer simulation of temperature autostabilization: an analysis of the phenomenon

A mathematical model of the temperature autostabilization by microorganism populations in batch and continuous operation has been developed. It adequately describes the process of temperature autostabilization by Candida tropicalis yeast microorganisms on H-alkanes. The model analysis has permitted determination of the conditions for the existence of the phenomenon and an explanation of its basic factors, such as linear biomass growth and dependence of microorganisms growth velocity on heat transfer through reactor walls. The industrial application of this interesting phenomenon is discussed. Correspondence to: M. Kristapsons     

Co-immobilized Nitrosomonas europaea and Nitrobacter agilis cells: validation of a dynamic model for simultaneous substrate conversion and growth in kappa-carrageenan gel beads

A dynamic model for two microbial species immobilized in a gel matrix is presented and validated with experiments. The model characterizes the nitrification of ammonia with Nitrosomonas europaea and Nitrobacter agilis co-immobilized in K-carrageenan gel beads. The model consists of kinetic equations for the microorganisms and mass transfer equations for the substrates and products inside and outside the gel beads. The model predicts reactor bulk concentrations together with the substrate consumption rate, product formation, and biomass growth inside the gel beads as a function of time. A 50-day experiment with immobilized cells in a 3.3-dm(3) air-lift loop reactor was carried out to validate the model. The parameter values for the model were obtained from literature and separate experiments. The experimentally determined reactor bulk concentrations and the biomass distribution of the two microorganisms in the gel beads were well predicted by the model. A sensitivity analysis of the model for the given initial values indicated the most relevant parameters to be the maximum specific growth rate of the microorganisms, the diffusion coefficient of oxygen, and the radius of the beads. The dynamic model provides a useful tool for further study and possible control of the nitrification process. (c) 1994 John Wiley & Sons, Inc.     

Antibiotic properties of lignin components

Inhibitory effects of compounds with guaiacyl and syringyl structure, representing the structure of native lignin, were studied on model cultures of bacteria, yeasts, yeast-like microorganisms and moulds. Isoeugenol exhibited the most pronounced inhibitory effect on growth of the studied microorganisms.     

A Combined Model for Growth and Subsequent Thermal Inactivation of Brochothrix thermosphacta

A mathematical technique for integrating growth and thermal inactivation models of microorganisms into a smooth combined model that can be applied to circumstances under which the temperature gradually rises from growth to inactivation regions is described. For the death part of the model, a correction term is introduced to allow for additional resistance of the cells gained during slow heating. The model was validated with Brochothrix thermosphacta heated in broth at rising temperatures.     

Kinetic modeling of poly(beta-hydroxybutyrate) production and consumption by Paracoccus pantotrophus under dynamic substrate supply

The objective of the research was to obtain insights into the behavior of microorganisms under feast/famine conditions as often occur in wastewater treatment processes. The response of microorganisms to such conditions is the accumulation of storage polymers like poly(beta-hydroxybutyrate). The research was performed using a pure culture of Paracoccus pantotrophus LMD 94.21. A steady-state C-limited chemostat culture was switched to batch mode and a pulse of acetate was added. As long as external substrate (acetic acid) was present, the organism grew and accumulated poly(beta-hydroxybutyrate). After depletion of the external substrate, the stored poly(beta-hydroxybutyrate) was used as growth substrate. Poly(beta-hydroxybutyrate) accumulation was found to be strongly dependent on the growth rate of the organism before the pulse addition of acetate. Poly(beta-hydroxybutyrate) accumulation was correlated to the difference in maximum acetate uptake rate and the acetate required for growth. Based on the interpretation of the experimental results, a metabolically structured model has been set up. This model adequately describes the observed kinetics of the poly(beta-hydroxybutyrate) formation and consumption. (c) 1997 John Wiley & Sons, Inc. Biotechnol Bioeng 55: 773-782, 1997.     

Mixed culture model of anaerobic digestion: application to the evaluation of startup procedures

The successful operation of anaerobic digestion depends on the balanced growth of many bacterial species. The functions of the main groups of microorganisms present in a digester have been analyzed and a mathematical model constructed that describes the interactions among the microbial populations and their effect on the digester performance. The model was validated by comparing its predictions with actual digester operation. Several startup procedures were evaluated in the light of the model predictions and improvements on current operational practices suggested in order to minimize startup time.     

嗜酸氧化亚铁硫杆菌生长动力学

在确定二价铁离子为A.f生长过程中惟一限制性底物条件下,通过考察初始亚铁离子浓度、初始pH值两种影响亚铁离子氧化代谢的主要因素来研究细菌的生长特性,得到以限制性底物亚铁离子浓度为表征的细菌生长曲线。利用基于Monod方程建立的细菌生长动力学方程模型,采用Matlab软件中的Gauss-Newton算法确定了在不同条件下细菌生长动力学参数,包括最大比生长速率μm、Monod常数K及Ro,推导出了不同条件下A.f对数期以底物Fe(Ⅱ)浓度为表征的生长动力学方程。     

A cellular automata model for simulating fed-batch penicillin fermentation process

A cellular automata model to simulate penicillin fed-batch fermentation process (CAPFM) was established in this study, based on a morphologically structured dynamic penicillin production model, that is in turn based on the growth mechanism of penicillin producing microorganisms and the characteristics of penicillin fed-batch fermentation. CAPFM uses the three-dimensional cellular automata as a growth space, and a Moore-type neighborhood as the cellular neighborhood. The transition rules of CAPFM are designed based on mechanical and structural kinetic models of penicillin batch-fed fermentation processes. Every cell of CAPFM represents a single or specific number of penicillin producing microorganisms, and has various state. The simulation experimental results show that CAPFM replicates the evolutionary behavior of penicillin batch-fed fermentation processes described by the structured penicillin production kinetic model accordingly. __________ Translated from ACTA BIOPHYSICA, 2005, 21(2) [译自: 生物物理学报, 2005,21(2)]     

Influence of Food Microorganisms on Staphylococcal Growth and Enterotoxin Production in Meat

Forty-four microorganisms were studied for their influence on staphylococcal growth and enterotoxin production. Inhibition was found to be more common than stimulation. Two types of inhibition were observed: inhibition of staphylococcal growth, and inhibition of enterotoxin formation with no apparent effect on growth. By use of a plate test, 12 of the 44 food microorganisms were found to inhibit staphylococcal growth at 35 C. Of the 12, 3 also inhibited growth at 25 C. No significant differences in inhibition were observed with the 15 strains of enterotoxigenic staphylococci. In meat slurries, inhibition of staphylococcal growth was found to be greater at 25 C than at 35 C. Results on inhibition obtained from the plate test could not be correlated with the effect of the organisms in slurries. Environmental conditions were found to affect markedly the influence of food microorganisms on staphylococci. Of the 44 food microorganisms studied, only Bacillus cereus was observed to stimulate significantly staphylococcal growth and enterotoxin formation. Stimulation was more pronounced with Staphylococcus aureus 196E than with other strains of enterotoxigenic staphylococci. Bacillus megaterium and Brevibacterium linens were inhibited by staphylococci. These organisms were completely inhibited when inoculated in mixed cultures with staphylococci. In pure cultures, good staphylococcal growth was found to be accompanied by enterotoxin production; however, in the presence of food microorganisms, good staphylococcal growth occurred without the formation of detectable levels of enterotoxin A.     

Growth of Anopheles mosquito larvae on dietary microbiota in aquatic surface microlayers

Abstract. Hydrophobic organic matter accumulates under the surface film of water bodies to form the surface microlayers. Heterotrophic microorganisms use this organic matter for growth, and they, in turn, are fed upon by Anopheles mosquito larvae and other animals. From laboratory experiments we show that two species of mosquito larvae, Anopheles gambiae and An.quadrimaculatus , grew most rapidly where surface micro-layers were present and, especially, where labile dissolved organic matter was added to promote growth of microorganisms. The importance of microorganisms was confirmed by the addition of gentamicin antibiotic, which suppressed the microbiota and reduced the growth of larvae feeding on surface microlayers. Anopheles larvae grew well on a suspension of finely ground fish food to which the antibiotic had been added, showing that reduced growth was not due to gentamicin itself. Because sub-surface microorganisms are the components of the larval diet that most affect growth, we discuss their relevance to strategies for larval control of Anopheles mosquitoes.     

Biofilms and biocides

Biofilm is a ubiquitous material generated by microorganisms proliferating on solid surfaces in water exposed to appropriate aqueous nutrients. It is suggested that model biofilm fermenters will be useful in investigating and in the end controlling biofilm formation. The Cardiff constant depth film fermenter is described. The growth of cutting fluid organisms on a model amine: carboxylate medium in this system is discussed. A simple film model based on a dominant metal-working fluid organism Pseudomonas aeruginosa was investigated and preliminary results using formaldehyde as a biocide are presented.