Integrative taxonomy of the Pavlovophyceae (Haptophyta): a reassessment

The Pavlovophyceae (Haptophyta) contains four genera (Pavlova, Diacronema, Exanthemachrysis and Rebecca) and only thirteen characterised species, several of which are important in ecological and economic contexts. We have constructed molecular phylogenies inferred from sequencing of ribosomal gene markers with comprehensive coverage of the described diversity, using type strains when available, together with additional cultured strains. The morphology and ultrastructure of 12 of the described species was also re-examined and the pigment signatures of many culture strains were determined. The molecular analysis revealed that sequences of all described species differed, although those of Pavlova gyrans and P. pinguis were nearly identical, these potentially forming a single cryptic species complex. Four well-delineated genetic clades were identified, one of which included species of both Pavlova and Diacronema. Unique combinations of morphological/ultrastructural characters were identified for each of these clades. The ancestral pigment signature of the Pavlovophyceae consisted of a basic set of pigments plus MV chl cPAV, the latter being entirely absent in the Pavlova + Diacronema clade and supplemented by DV chl cPAV in part of the Exanthemachrysis clade. Based on this combination of characters, we propose a taxonomic revision of the class, with transfer of several Pavlova species to an emended Diacronema genus. The evolution of the class is discussed in the context of the phylogenetic reconstruction presented.     

Taxonomy of Mechanitis (F.) (Lepidoptera: Nymphalidae) from the West Colombian Andes: an Integrative Approach

Species identification in the butterfly genus Mechanitis (F.) (Lepidoptera: Nymphalidae) becomes difficult when it is based only on wing color patterns, a common practice in butterfly taxonomy. Difficulties in Mechanitis taxonomy are related to the widespread mimicry and polymorphism among species belonging to this genus. Species recognition and inventories of Mechanitis genus in geographic areas as the Andean region of Colombia are of particular interest and the use of more than one character for taxonomic identification is desirable. In this study, we included morphological, ecological, and mitochondrial DNA data to identify the occurring species in this region. Species of Mechanitis were studied from ecological, morphological, and molecular perspectives considering host plant identification, oviposition behavior, and life cycles under laboratory conditions. Immature morphology, patterns of wing color, and genital structures of adults were also studied. The genetic barcoding region of the cytochrome oxidase I mitochondrial gene was sequenced and used to verify the limits between species previously defined by the other characters and to validate its usefulness for species delimitation in this particular genus. The integrative approach combining independent datasets successfully allowed species identification as compared to the approach based on a single dataset. Three well-differentiated species were found in the studied region, Mechanitis menapis (Hewitson), Mechanitis polymnia (Linnaeus), and Mechanitis lysimnia (Fabricius). New valuable characters that could improve taxonomic identification in this genus are considered.     

Integrative Taxonomy and Species Delimitation in Harvestmen: A Revision of the Western North American Genus Sclerobunus (Opiliones: Laniatores: Travunioidea)

Alpha taxonomy, and specifically the delimitation of species, is becoming increasingly objective and integrative. The use of coalescent-based methods applied to genetic data is providing new tools for the discovery and delimitation of species. Here, we use an integrative approach via a combination of discovery-based multivariate morphological analyses to detect potential new species. These potential species are then used as a priori species in hypothesis-driven validation analyses with genetic data. This research focuses on the harvestmen genus Sclerobunus found throughout the mountainous regions of western North America. Based on our analyses, we conduct a revision of Sclerobunus resulting in synonymy of Cyptobunus with Sclerobunus including transfer of S. cavicolenscomb. nov. and elevation of both subspecies of S. ungulatus: S. ungulatuscomb. nov. and S. madhousensiscomb. nov., stat. nov. The three subspecies of S. robustus are elevated, S. robustus, S. glorietusstat. nov., and S. idahoensisstat. nov. Additionally, five new species of Sclerobunus are described from New Mexico and Colorado, including S. jemezsp. nov., S. klomaxsp. nov., S. skywalkerisp. nov., S. speoventussp. nov., and S. steinmannisp. nov. Several of the newly described species are single-cave endemics, and our findings suggest that further exploration of western North American cave habitats will likely yield additional new species.     

Toxicity of coastal coccolithophores (Prymnesiophyceae, Haptophyta)

Over the last decade, certain coccolithophores have been thesubject of extensive multidisciplinary research. Several speciesof coccolithophore, belonging mainly to the families Pleurochrysidaceaeand Hymenomonadaceae, inhabit inshore coastal waters where theymay occasionally bloom and hence impact aquaculture resources.The toxicity to Artemia salina larvae of 11 species of coccolithophore(nine coastal and two oceanic members of the order Coccolithales)was tested. For the nine coastal species, tests were conductedwith rapidly growing and stationary phase cultures at a rangeof cellular concentrations and for two different exposure times(24 and 48 h). Five of the coastal species (four in the genusPleurochrysis as well as Jomonlithus littoralis) were foundto be toxic to A. salina nauplii. Allelopathic effects of acell-free filtrate of a culture of a toxic coccolithophore werealso tested on three flagellate microalgal species: Scrippsiellatrochoidea, Tetraselmis sp. and Isochrysis galbana. Negativeeffects of the filtrate on growth rates and motility of S. trochoideaand Tetraselmis sp. were recorded, suggesting that the toxinof the coccolithophore tested could be an exotoxin similar tothat produced by other non-calcifying members of the Prymnesiophyceae.The fact that certain coccolithophores were found to be toxicto invertebrates and were shown to exhibit allelopathic activitycould imply negative effects at different trophic levels incoastal areas.     

142 Insight Into the Mitochondrial Genome of Emiliania Huxleyi (Haptophyta)

Emiliania huxleyi (Lohmann) Hay et Mohler 1967 (CCMP373) is the most abundant representative of the Haptophyta, and can be found in oceanic and neritic waters from subpolar to tropical latitudes. Blooms of this coccolithophorid may reach cell densities of 2.106 ml⁻¹ and emit vast amounts of DMS (dimethyl sulfide), with the potential to affect the global climate. We report here the DNA sequence of more than 21 kb of the mitochondrial genome of this species, out of an approximate total of 30 kb. Preliminary annotation of the genome using database searches identified at least 16 genes. The data were also compared to the unpublished mitochondrial genome of Pavlova lutheri , another member of the haptophytes, and some important differences were identified. Although the gene content of E. huxleyi mtDNA seems to closely resemble that of P. lutheri mtDNA, the gene order differs substantially. Access to the P. lutheri and E. huxleyi mitochondrial genomes will permit the comparative analysis of two deeply diverging members of an ancient and ecologically significant lineage. Among other potential applications, the data will help to clarify phylogeny within the haptophytes as well as to determine the phylogenetic position of this division in relation to other groups of algae, such as heterokonts, dinoflagellates and cryptophytes.     

Morphological variation in the deep ocean-dwelling coccolithophore Florisphaera profunda (Haptophyta)

Detailed analysis of the morphology of Florisphaera profunda from plankton samples collected at three sites in the Atlantic and Pacific Oceans reveals wide variation in this deep ocean-dwelling coccolithophore. In addition to the two varieties described previously, we found a third distinctive form, Florisphaera profunda var. rhinocera var. nov. All three varieties occur at each of the sampling sites. The analysis of monthly samples from different levels in the lower photic zone (LPZ) (100–200?m) at the Hawaii Ocean Time series station suggests that the varieties have similar distributions, which are correlated to primary productivity and the availability of light. The analysis of coccolith and coccosphere size in F. profunda reveals the existence of several size modes in Florisphaera profunda var. profunda and F. profunda var. elongata. The biological significance of these modes, or morphotypes is not known. However, their co-occurrence in single samples from different oceanic areas suggests that they are not ecophenotypes. In the light of recent molecular genetic analyses of intraspecific groups within commonly occurring coccolithophores, the varieties and size morphotypes of F. profunda are of significant interest for the study of marine phytoplankton biodiversity. Coccolithophores inhabiting the LPZ may be adapted to the low light, high nutrient conditions of this layer and hold great potential as a means to reconstruct past oceanographic conditions such as the position of the nutricline. However, coccolithophore biodiversity in the LPZ is poorly documented and the number of species may be much higher than previously thought.     

Integrative Taxonomy of Southeast Asian Snail-Eating Turtles (Geoemydidae: Malayemys) Reveals a New Species and Mitochondrial Introgression

Based on an integrative taxonomic approach, we examine the differentiation of Southeast Asian snail-eating turtles using information from 1863 bp of mitochondrial DNA, 12 microsatellite loci, morphology and a correlative species distribution model. Our analyses reveal three genetically distinct groups with limited mitochondrial introgression in one group. All three groups exhibit distinct nuclear gene pools and distinct morphology. Two of these groups correspond to the previously recognized species Malayemys macrocephala (Chao Phraya Basin) and M. subtrijuga (Lower Mekong Basin). The third and genetically most divergent group from the Khorat Basin represents a previously unrecognized species, which is described herein. Although Malayemys are extensively traded and used for religious release, only few studied turtles appear to be translocated by humans. Historic fluctuations in potential distributions were assessed using species distribution models (SDMs). The Last Glacial Maximum (LGM) projection of the predictive SDMs suggests two distinct glacial distribution ranges, implying that the divergence of M. macrocephala and M. subtrijuga occurred in allopatry and was triggered by Pleistocene climate fluctuations. Only the projection derived from the global circulation model MIROC reveals a distinct third glacial distribution range for the newly discovered Malayemys species.     

Suidae Transition at the Miocene-Pliocene Boundary: a Reassessment of the Taxonomy and Chronology of Propotamochoerus provincialis

Journal of Mammalian Evolution - The Miocene-Pliocene (Turolian-Ruscinian) transition represents a fundamental interval in the evolution of Euro-Mediterranean paleocommunities. In fact, the...     

Taxonomy of Gundlachia (Compositae: Astereae)

Gundlachia, a genus of shrubs occurring in the Caribbean islands, is treated as comprising two species, one of which has six varieties. Five new combinations are made: Gundlachia corymbosa var. apiculata (Britton & S. F. Blake) M. A. Lane, G. corymbosa var. compacta (Urb. & Ekman) M. A. Lane, G. corymbosa var. cubana (Britton & S. F. Blake) M. A. Lane, G. corymbosa var. foliosa (Britton & S. F. Blake) M. A. Lane, and G. corymbosa var. ocoana (Urb. & Ekman) M. A. Lane. Gundlachia is probably most closely related to Gymnosperma.     

Taxonomy of the genusBrimeura (Hyacinthaceae)

A taxonomic reevaluation of two little-knownBrimeura taxa,B. fontqueri (Pau)Speta andB. duvigneaudii (L. Llorens)Rosselló et al., has been made.Brimeura fontqueri, described from the Iberian peninsula, has been put into synonymy ofB. amethystina (L.)Salisb., since it could not be distinguished on morphological, anatomical or cytogenetic grounds.Brimeura duvigneaudii, from the Balearic Islands, is closely related toB. amethystina and has 2n=28 chromosomes. It differs from the latter by its naked bulbs lacking dark cataphylls, and its narrower leaves and whitish corollas. Accessory chromosomes are reported for the first time in the genus. Karyological instability (with chromosome numbers ranging from 2n=28 to 42) is reported for a population ofB. fastigiata (Viv.)Chouard. A key to the recognized taxa ofBrimeura is provided.     

Characterization of the selenite uptake mechanism in the coccolithophore Emiliania huxleyi (Haptophyta)

The marine coccolithophore Emiliania huxleyi (Haptophyta) requires selenium as an essential element for growth, and the active species absorbed is selenite, not selenate. This study characterized the selenite uptake mechanism using ??Se as a tracer. Kinetic analysis of selenite uptake showed the involvement of both active and passive transport processes. The active transport was suppressed by 0.5 mM vanadate, a membrane-permeable inhibitor of H?-ATPase, at pH 8.3. When the pH was lowered from 8.3 to 5.3, the selenite uptake activity greatly increased, even in the presence of vanadate, suggesting that the H? concentration gradient may be a motive force for selenite transport. [??Se]Selenite uptake at selenite-limiting concentrations was hardly affected by selenate, sulfate and sulfite, even at 100 μM. In contrast, 3 μM orthophosphate increased the K(m) 5-fold. These data showed that HSeO??, a dominant selenite species at acidic pH, is the active species for transport through the plasma membrane and transport is driven by ΔpH energized by H?-ATPase. Kinetic analysis showed that the selenite uptake activity was competitively inhibited by orthophosphate. Furthermore, the active selenite transport mechanism was shown to be induced de novo under Se-deficient conditions and induction was suppressed by the addition of either sufficient selenite or cycloheximide, an inhibitor of de novo protein synthesis. These results indicate that E. huxleyi cells developed an active selenite uptake mechanism to overcome the disadvantages of Se limitation in ecosystems, maintaining selenium metabolism and selenoproteins for high viability.     

Taxonomy ofNeurolaena (Asteraceae-Heliantheae)

A taxonomic treatment of the tropical genusNeurolaena (tribeHeliantheae, subtribeGalinsoginae) is rendered. Ten species are recognized: the widespread, annual, weedy,N. lobata and nine relatively rare, relictual, shrubby or small tree species, mostly restricted to southern Mexico and Central America. Distributional maps, key to species, and complete synonymy are presented. A chromosomal and chemical review is also provided.     

The Caribou Migration Model for Arctic Hadrosaurs (Dinosauria: Ornithischia): A Reassessment

The recovery of abundant dinosaur fossils from high paleolatitudes of northern Alaska has raised some hard questions in relation to any available model of dinosaur physiology. To explain the occurrence of hadrosaurs at high ancient latitudes, a model involving long-distance migration analogous to that of the modern caribou has been proposed. The model calls for seasonal movements over great latitudinal distances by these Cretaceous hadrosaurs. This model is reassessed in terms of the growth, body sizes, and inferred physiological ecology of the hadrosaurs and the caribou. Histological data suggest that juvenile hadrosaurs obtained from northern Alaska were greater than 1 year in age. Comparison of the relative sizes of juvenile and adult hadrosaurs with juvenile and adult caribou suggests, based on qualitative energetics, that the juvenile hadrosaurs were too small to participate in long-distance migration. The "hadrosaurs as caribou" model provides clues to the feeding ecology of North Slope hadrosaurs, if they are reinterpreted as year-round residents of high latitudes. However, it does not constitute a satisfactory basis on which to infer long-distance seasonal migrations by these animals.     

An Integrative Taxonomy of Amphibians of Nepal: An Updated Status and Distribution

Amphibians are declining worldwide.At the same time,each year many species of amphibians are described,indicating that biological diversity on Earth remains poorly understood.This is especially true for mountainous regions,such as the Himalayas,which are also regarded as a biodiversity hotspot.However,it is most likely that the current diversity of amphibians in Nepal is highly underestimated.Amphibian inventories by the past researchers primarily used phenotypic characters as the basis for species identification.However,the application of molecular systematics methods to taxonomic studies has successfully uncovered the taxonomic status of several cryptic taxa.This study used both molecular(16 S rDNA sequences)and morphological comparisons and estimated the diversity of amphibians from Nepal.This study reports the occurrence of 38 species of amphibians based on both molecular and morphological comparisons.Among them,three species were recorded for the first time in Nepal.This study also invalids the taxonomic status of Sphaerotheca paschima.This study highlights the importa nce of integrative taxonomic approaches that help to resolve the current taxonomic ambiguities of Nepalese amphibians.     

Taxonomy of the genus Aspasia Lindley (Orchidaceae: Oncidieae)

The genusAspasia (Orchidaceae: Oncidieae) consists of five species of epiphytic orchids of Central and South America. The genus is compared with closely related genera of the tribe Oncidieae.Aspasia epidendroides is found in Nicaragua, Costa Rica, and western Panama.Aspasia principissa is found in central and eastern Panama and adjacent Colombia.Aspasia psittacina is endemic to western Ecuador.Aspasia variegata is found in Colombia, Venezuela, Trinidad, Guyana, Surinam, and Brazil.Aspasia lunata is known only from Brazil.     

Taxonomy of the genus Acymatopus Takagi (Diptera: Dolichopodidae)

Two new species of the genus Acymatopus from Japan and China are described. This is the first record of Acymatopus outside Japan. A key to all six valid species of the genus is given, and their distributions are mapped and discussed.