Are there adequate data to assess how well theories of rarity apply to marine invertebrates?

Understanding the biology of rare species is a very important part of conservation biology. Most of our current understanding of rarity has, however, come from studies of terrestrial plants, birds, mammals and some insects. Freshwater and marine habitats are underrepresented in published studies of rare species or conservation biology. We therefore have little knowledge about how well our understanding of what makes particular species rare and how rare species persist applies to marine invertebrates which form a major component of coastal biodiversity. In this review, I examine some theories about rarity with respect to intertidal and shallow subtidal invertebrates to identify whether there are adequate data to apply these theories to marine invertebrates and how well such theories apply. The general conclusions are that the lack of quantitative data on abundances, ranges, habitat-requirements, dispersal and connectedness among populations for marine invertebrates means that their status as rare species cannot really be assessed appropriately. It is also unlikely that, without extensive sampling programmes and considerable expense, adequate data could be obtained for these small, cryptic animals, which typically have very patchy, variable and unpredictable patterns of distribution and abundance. Intertidal and subtidal assemblages are diverse, including species with many different life-histories from many phyla, occupying the same suite of habitats. It is therefore suggested that future research on rare organisms in marine habitats should build upon the long and successful history of experimental marine studies to test specific hypotheses about processes influencing rarity in the field. Such studies would not only add a new dimension to our current understanding of rarity, but would also provide badly-needed data on the status of rare marine invertebrates. abundances, invertebrates, marine, range, rarity     

The national responsibility approach to setting conservation priorities—Recommendations for its use

The implementation of conservation strategies for species and habitats is frequently hampered by the availability of the necessary resources. These should be prioritized and focused on those species and habitats most in need, but also in regard to the importance of their distribution in a certain region, country or other administrative unit. In that perspective, the concept of national responsibilities (NR) is a recently developed tool to support priority setting. It captures the impact of the loss of a particular species or habitat within the focal region (usually a country) may have on the global persistence of that species or habitat type. Although the method consists of a few simple steps and is not very demanding in regard to data availability per species and habitat type, it is still impossible to determine NRs for all species and habitats. Here, we focus on the difficulties in determining NRs due to missing distribution data, varying interpretations of definitions especially in respect to habitat types, and differences in data formats and maps using European examples of these data limitations and sources of bias. These include artificially enlarged distribution areas resulting from grid cells being reported more than once, gridded shapefiles stretching into the sea or into other biogeographic regions, and differences in the size and the shape of grid cells and hence the resolution of maps. While focusing on European examples, these sources of bias are also relevant for conservation efforts on a global scale. Our analysis stresses the importance of quickly improving data quality, availability and comparability to render conservation more efficient. We give policy relevant examples on how the NR approach can be applied, e.g. how to help attributing budgets to poorer countries, on which species and habitats to focus limited monitoring resources, and how to consider newly emerging diseases. Generally, our analyses suggests (i) to develop clear global data standards, (ii) to regularly assess data to keep up with advances in data handling, and (iii) to use downscaling approaches for biodiversity data to a higher resolution for reducing the impact of bias to a negligible level together with improving the overall quality of distribution data for conservation purposes.     

Bird communities in habitats along a successional gradient: Divergent patterns of species richness,specialization and threat

The long history of human influence on northern temperate landscapes has created a mosaic of successional stages, from closed forest to open grassland. Various species thus adapted to different habitats and it is interesting to explore how these differences in species composition among particular successional stages translate into differences at the community level. For this purpose, we surveyed breeding birds in 233 patches of five different habitats covering a gradient from bare ground to forest in 29 abandoned military training sites scattered throughout the Czech Republic. Linear mixed effects modelling revealed that late-successional habitats (dense scrubland and forest) were the most species-rich, whereas early-successional stages hosted bird communities with the highest habitat specialization and threat level. These results suggest that the habitats of late-successional stages are important for the maintenance of high bird species richness, but that early-successional habitats are essential for highly specialized and threatened bird species. Given the highly adverse impacts of agricultural intensification and land abandonment on open habitats, it is necessary to promote factors creating initial successional stages suitable for specialized and threatened species.     

Gastropod diversity,distribution and abundance in habitats with and without anthropogenic disturbances in Lake Victoria,Kenya

We investigated freshwater gastropod diversity, abundance and distribution in habitats with and without anthropogenic disturbance in two localities, Ndere in the Winam Gulf and Mbita Point, Lake Victoria, Kenya, from May 2002 to January 2004. A total of 133 984 gastropod specimens belonging to 15 species were recorded, 14 from Mbita and 12 from Ndere. Two species, Ferrissia kavirondica and Cleopatra cridlandi, which were recorded only from undisturbed habitats, could be indicators of least disturbed habitats. Water chemistry did differ between fish landing sites and undisturbed habitats at some sampling times, indicating that differences due to human impact do exist, but these are dependent on periods of calm weather. The study shows that anthropogenic disturbances cause ecological changes that can be exploited by some snail species, especially Biomphalaria choanomphala and Melanoides tuberculata, while other species may not tolerate these changes. In order to protect gastropod diversity and avoid dominance of intermediate hosts, such as B. choanomphala, a management plan for the use of these fish landing sites should be developed. This could include rules on how to dispose of fish remnants and other wastes so as to reduce local eutrophication, thereby reducing risks associated with transmission of potential snail-borne diseases.     

Non-indigenous land and freshwater gastropods in Israel

Few comprehensive works have investigated non-indigenous snails and slugs as a group. We compiled a database of non-indigenous gastropods in Israel to explore how they arrived and spread, characteristics of their introduction, and their biological traits. Fifty-two species of introduced gastropods are known from Israel (of which nine species subsequently went extinct): 19 species of freshwater snails and 33 species of terrestrial gastropods. The majority of these species are found only in human-dominated habitats. Most of those found in natural habitats are aquatic species. Most snails are introduced unintentionally from various parts of the Holoarctic region, reaching Israel as stowaways with horticultural imports and the aquarium trade, but some are brought intentionally to be used as pets or for food. Because the study of this group in Israel is very limited, information regarding their distribution in the country and their effects on other species is incomplete. Though only nine species of non-indigenous snails have been found to date in natural habitats, some of these are very abundant. More information and research is required to enable effective management schemes.     

Phylogenetic relationships and remarkable radiation in Parartemia (Crustacea: Anostraca), the endemic brine shrimp of Australia: evidence from mitochondrial DNA sequences

The Australian continent is notable for the faunal radiations which have occurred in its saline inland waters. The endemic brine shrimp genus Parartemia inhabits many of these habitats. The complex pattern of morphological variation in parartemiids has impeded the establishment of a sound scheme of species relationships. The present study provides an explicit hypothesis of relationships for the genus based on nucleotide sequence data from a segment of mitochondrial DNA coding for the large subunit rRNA gene. Phylogenetic analyses indicated that the eight known species are genetically distinct, and revealed the existence of at least two new species. The molecular data support certain morphology-based relationships among species, but are inconsistent with other hypotheses. There is evidence that most members of the genus arose in a short interval, followed by remarkable genetic divergence. Comparisons of levels of mt DNA sequence divergence between lineages from saline inland waters and freshwaters using representative crustacean groups from Australia that included parartemiids indicated profound differences in rates of evolution, with halophiles exhibiting greater rates of change than their counterparts from freshwaters.     

Molecular diversity of fungal phylotypes co-amplified alongside nematodes from coastal and deep-sea marine environments

Nematodes and fungi are both ubiquitous in marine environments, yet few studies have investigated relationships between these two groups. Microbial species share many well-documented interactions with both free-living and parasitic nematode species, and limited data from previous studies have suggested ecological associations between fungi and nematodes in benthic marine habitats. This study aimed to further document the taxonomy and distribution of fungal taxa often co-amplified from nematode specimens. A total of 15 fungal 18S rRNA phylotypes were isolated from nematode specimens representing both deep-sea and shallow water habitats; all fungal isolates displayed high pairwise sequence identities with published data in Genbank (99-100%) and unpublished high-throughput 454 environmental datasets (>95%). BLAST matches indicate marine fungal sequences amplified in this study broadly represent taxa within the phyla Ascomycota and Basidiomycota, and several phylotypes showed robust groupings with known taxa in phylogenetic topologies. In addition, some fungal phylotypes appeared to be present in disparate geographic habitats, suggesting cosmopolitan distributions or closely related species complexes in at least some marine fungi. The present study was only able to isolate fungal DNA from a restricted set of nematode taxa; further work is needed to fully investigate the taxonomic scope and function of nematode-fungal interactions.     

The phylogenetics of Desmognathine salamander populations across the southern Appalachians

Salamanders in the genus Desmognathus (Caudata: Plethodontidae) are distributed along an aquatic to terrestrial habitat gradient in the southern Appalachian Mountains. The spatial distribution of species is believed to have formed as aquatic ancestors displaced lineages by competition and predatory interactions into less optimal terrestrial habitats. Aquatic and terrestrial species may also display different patterns of genetic diversity due to the differing likelihood of gene flow via aquatic corridors. To determine whether phylogenetic patterns were consistent with these hypotheses, we sequenced portions of the cytochrome oxidase I and 12S rRNA genes of the mitochondrial genome from 96 individuals belonging to 10 species in the genus Desmognathus. In addition, we combined our dataset with an earlier published dataset for the 12S rRNA genes. The order of species divergence is consistent with aquatic ancestors having displaced taxa into more terrestrial habitats, but the major lineages within the genus Desmognathus arose suddenly, and therefore, the specific sequence of events is not well resolved. The phylogenetic analyses among species suggest that direct-development and a terrestrial lifestyle are ancestral in the genus Desmognathus, but the degree of adult terrestriallity is labile, with some species having re-invaded terrestrial habitats. We present evidence of a clade of Desmognathus quadramaculatus from North Carolina that is distinct from the D. quadramaculatus/Desmognathus marmoratus clade. Within species, estimates of Tajima's D and Fu and Li's statistics suggest the species experienced population expansions at different times in the past. Current levels of sequence diversity in northern populations, therefore, reflect different arrival times, and hence, differences in the opportunity for among population divergence. The recent arrival of most species over large portions of their geographic ranges suggests that most extant communities have been assembled, a posteriori, by the recent assortment of species along the aquatic to terrestrial gradient according to their ecologies.     

Functional divergence between morphs of a dwarf chameleon: differential locomotor kinematics in relation to habitat structure

Arboreal lizards are extremely effective at moving in structurally complex habitats, including surfaces of varying diameter and incline. Chameleons exemplify this by exhibiting a number of morphological specializations for moving in these habitats, including the use of prehensile feet and tail to grasp branches. Despite their unique morphology and behaviour, little is known about how locomotor movements vary between species. In addition, some species, such as the Cape Dwarf Chameleon, Bradypodion pumilum, consist of two morphs that differ in ecology, morphology, and behaviour. The two morphs can be found in either closed canopy woodland habitat or relatively open fynbos habitat. The morph that occupies the woodland habitat tends to be larger and utilizes larger diameter perches. Although their ecological and morphological divergence is established, whether this translates into differences in three‐dimensional kinematics of locomotion is not known. Given the potentially strong selective pressures from structurally different habitats, kinematic differences might reveal the functional basis of incipient speciation. We determined that the two morphs diverge significantly in multidimensional kinematic space, and that this occurs for the forelimb and hindlimb independently. These differences outweigh the effects of substrate within each morph, although the differences between morphs were more pronounced on the vertical treatments.     

Correlates of geographic range size in New Zealand Chionochloa (Poaceae) species

Aim To test for correlations between plant traits and geographic range size. Location: New Zealand. Methods Trait data were derived from comparative experiments, in which plants were grown in pots or in a common garden, that tested for intrinsic differences among the species in traits relating to growth, reproduction and dispersal. Controlled experiments were used to test for differences in responses to drought and waterlogging stress. Geographic range size was measured as the number of 10 km grid squares in the New Zealand region containing at least one occurrence of the species. Results Growth rate, dispersal capacity and environmental tolerance were all positively related to geographic range size. Geographically restricted species tended to have more variable flowering between years. Flowering intensity, reproductive allocation, seed set, diaspore size, and responses to single environmental factors were not related to geographic range size. Main conclusions The differences between range‐restricted and widespread Chionochloa species appear to represent alternative strategies of coping with environmental change in a dynamic landscape. Range‐restricted species are specialized to temporally persistent habitats that are of limited geographic extent. As a consequence, they have evolved traits that conflict with persistence in widespread habitats. The implication for conservation management is that the conservation of rare plants will frequently depend on protection of their habitats. The widespread Chionochloa species possess traits that enable them to disperse to and occupy a greater range of habitats. These traits have allowed some of these species to expand their ranges following environmental changes that favoured an increase in grassland extent.     

Progressive bias in species status is symptomatic of fine-grained mapping units subject to repeated sampling

Atlas maps of butterflies invariably fail to distinguish the status of records, that is, whether they are observations of breeding populations or vagrant individuals. Yet, for conservation purposes, it is clearly important to know whether records relate to breeding populations in suitable habitats or not. The high mobility of butterfly adults carries two expectations. First, vagrants will frequently be recorded within grid squares, particularly when mapping is fine grained. Second, the frequency of vagrants is likely to be higher in mapping units comprising biotopes with few butterfly habitats, than in those rich in butterfly habitats, if only because there is a greater regional pool of potential vagrants for biotopes depleted in butterfly habitats. It follows that with repeated sampling of squares or biotopes differences in species breeding status will be cumulative between those rich and poor in butterfly habitats. In this paper, these predictions have been tested using data from 30, 1 ha grid squares on Alderley Edge Site of Special Scientific Interest (SSSI) (UK), half of which are in woodland (few butterfly habitats) and half with open habitats (non-woodland; rich in butterfly habitats). Butterflies have been recorded during 38 visits over 4 years. Within squares, vagrants have been distinguished from breeding species on the basis of the presence of larval hostplants and other suitable resources for seasonal maintenance. Owing to the occurrence of vagrants, number of breeding species was found to be significantly fewer than total species in mapping units. Vagrants were found to be significantly more abundant in woodland squares, which contain few species larval hostplants, than in squares dominated by open biotopes with many species larval hostplants. Repeated sampling resulted in a cumulative increase in the frequency of vagrant species. Furthermore, the relative frequency of vagrants increased at a greater rate in woodland squares compared to non-woodland squares. Suggestions are made as to how recording for atlases may be improved.     

野生扬子鳄栖息地植被多样性

2003年6～7月,采用样方法,对野生扬子鳄在安徽省南陵县、泾县、广德县、郎溪县和宣城地区等5县市的22个栖息地的植被进行了野外实地调查,并对植物种类作了详细的记录和分析,结果发现,野生扬子鳄栖息地植被均属于次生性植被,共有维管束植物92科294种;苦竹(Pteioblastus amarus)灌丛广泛分布于每个栖息地;22个调查点的植被多样性存在一定的差异．同时还初步分析了野生扬子鳄与栖息地植被多样性之间的关系,为野生扬子鳄的保护提供植物生态学基础资料。     

Clonal vs leaf-height-seed (LHS) traits: which are filtered more strongly across habitats?

Plant functional traits are now frequently used instead of species identity to identify how plant species co-exist in assemblages. One notion is that species inhabiting the same environment have more characteristics in common than species from different habitats, leading to different prevailing dominant traits along environmental gradients, and also to a lesser diversity of traits in habitats that impose a stronger filter on these traits. Though such patterns have been demonstrated for different environmental drivers and different traits, studies using easily available traits connected to above ground processes (i.e. traits of the leaf-height-seed, or LHS, strategy scheme) are largely overrepresented in these analyses. Here we combined data on clonal and bud bank traits, representing the ability to reproduce and spread vegetatively, with LHS trait data and examined how these traits varied in relation to the vegetational composition of 29 Central-European habitat types. Our analysis focused on determining whether clonal/bud bank or LHS traits play an important role for environmental filtering along gradients approximated by Ellenberg indicator values (EIV) across these habitats. Our results show that clonal and bud bank traits are at least as – if not more – important for the differentiation of the 29 habitat types. Overall, diversity and dominance of clonal and bud bank traits was more strongly correlated with gradients of light availability, temperature, moisture, soil reaction, and nutrient availability across these habitats than it was the case for traits of the leaf-height-seed scheme. Our results call for a stronger integration of belowground traits into the functional traits approach in plant ecology and for an extension of efforts to collect such data.     

A Large-scale Comparative Analysis of Riffle and Pool Fish Communities in an Upland Stream System

Fishes were sampled in riffle and pool habitats at 74 upland localities in the Little River system, southeastern Oklahoma and southwestern Arkansas, U.S.A. I asked how these two habitat-defined communities differed with regard to species abundance and incidence patterns, and how these differences varied along othree environmental gradients: elevation, stream gradient, and stream size. Riffle and pool communities showed distinct and significant differences when ordinated in multivariate space defined by species abundance patterns. Sites with similar pool communities did not have similar riffle communities, and riffle and pool communities responded to environmental gradients in different ways. Elevation was the best predictor of pool community structure, whereas stream size was the best predictor of riffle communities. Overall, riffle habitats had fewer species than pool habitats and formed significant subsets of pool communities at 12 of 74 sites. I predicted that at small stream localities where riffles were unstable, riffle species would form subsets of the pool species communities, and both community types should show high similarities. The presence of faunal subsets was not associated with stream size, but faunal similarities were significantly higher at small stream localities. At the species level, 14 species were significantly associated with pool habitats, while only two were associated with riffle habitats. Riffle and pool communities, although linked by a continuous habitat gradient at the local scale, responded differently to large-scale environmental gradients. Local differences between these communities were predictable based on stream size.     

Longitudinal study of prevalence and spatio-temporal distribution of Borrelia burgdorferi sensu lato in ticks from three defined habitats in Latvia, 1999–2010

Members of the Borrelia burgdorferi sensu lato (s.l.) species complex are known to cause human Lyme borreliosis. Because of longevity of some reservoir hosts and the Ixodes tick vectors' life cycle, long-term studies are required to better understand species and population dynamics of these bacteria in their natural habitats. Ticks were collected between 1999 and 2010 in three ecologically different habitats in Latvia. We used multilocus sequence typing utilizing eight chromosomally located housekeeping genes to obtain information about species and population fluctuations and/or stability of B. burgdorferi s.l. in these habitats. The average prevalence over all years was 18.9%. From initial high-infection prevalences of 25.5%, 33.1% and 31.8%, from 2002 onwards the infection rates steadily decreased to 7.3%. Borrelia afzelii and Borrelia garinii were the most commonly found genospecies but striking local differences were obvious. In one habitat, a significant shift from rodent-associated to bird-associated Borrelia species was noted whilst in the other habitats, Borrelia species composition was relatively stable over time. Sequence types (STs) showed a random spatial and temporal distribution. These results demonstrated that there are temporal regional changes and extrapolations from one habitat to the next are not possible.     

Niches in the Anthropocene: passerine assemblages show niche expansion from natural to urban habitats

Human‐mediated habitat transformation is increasingly evident around the world. Yet, how this transformation influences species’ niche width and overlap remains unclear. On the one hand, human‐mediated habitat transformation promotes increased species similarity through trait‐based filtering, and an increased prevalence of generalist species with broad niches, resulting in functional homogenization. On the other hand, species that colonize transformed habitats could use empty niches, resulting in decreased species similarity and an expansion of assemblage‐level niche space. Here we explore these two alternatives in eight highly diverse passerine assembles in natural, rural and urban habitats in south and southwest China, a rapidly developing region of the world. Based on stable isotopes, we found that species’ niche width increased from natural to human‐made habitats, but there were no differences in niche overlap among habitats. Therefore, we found evidence for niche expansion, with generalists appearing to use empty niches created by human habitat modification, and with assemblages being comprised of complementary species. Further research is needed to determine whether increased between‐ or within‐individual niche variation is the main driver of niche expansion in transformed habitats.     

Habitat associations and breeding bird community composition within the city of Bristol,UK

Capsule Different urban breeding bird communities are associated with different habitat types, but, although community species diversity varies significantly, total bird density does not.

Aims To investigate the association between breeding bird communities and habitats within Bristol, UK and how these communities vary in terms of species diversity and total bird abundance.

Methods Breeding density data for 70 species in the metropolitan area of Bristol, UK were subjected to de‐trended correspondence analysis to identify the number of different communities present and their indicator species. These data were then used to identify patterns of habitat association with each community and differences in species richness and total bird density.

Results Three communities were identified: a rural community associated with woodland, managed grassland and inland water; a suburban community associated with buildings and residential gardens; and an intermediate community that shared some of these habitat characteristics. Species richness, but not total bird abundance, was lowest in the suburban community.

Conclusion The diversity of species in urban areas appears to be most dependent upon the availability of patches of natural and semi‐natural habitats. Residential gardens support fewer species, but those species that are present may be found at high densities.