Characterization of a novel dextransucrase from Weissella confusa isolated from sourdough

Weissella confusa and Weissella cibaria isolated from wheat sourdoughs produce, from sucrose, linear dextrans due to a single soluble dextransucrase. In this study, the first complete gene sequence encoding dextransucrase from a W. confusa strain (LBAE C39-2) along with the one from a W. cibaria strain (LBAE K39) were reported. Corresponding gene cloning was achieved using specific primers designed on the basis of the draft genome sequence of these species. Deduced amino acid sequence of W. confusa and W. cibaria dextransucrase revealed common structural features of the glycoside hydrolase family 70. Notably, the regions located in the vicinity of the catalytic triad (D, E, D) are highly conserved. However, comparison analysis also revealed that Weissella dextransucrases form a distinct phylogenetic group within glucansucrases of other lactic acid bacteria. We then cloned the W. confusa C39-2 dextransucrase gene and successfully expressed the mature corresponding enzyme in Escherichia coli. The purified recombinant enzyme rDSRC39-2 catalyzed dextran synthesis from sucrose with a K _m of 8.6 mM and a V _max of 20 μmol/mg/min. According to ¹H and ¹³C NMR analysis, the polymer is a linear class 1 dextran with 97.2 % α-(1→6) linkages and 2.8 % α-(1→3) branch linkages, similar to the one produced by W. confusa C39-2 strain. The enzyme exhibited optimum catalytic activity for temperatures ranging from 35 to 40 °C and a pH of 5.4 in 20 mM sodium acetate buffer. This novel dextransucrase is responsible for production of dextran with predominant α-(1→6) linkages that could find applications as food hydrocolloids.     

Geographical distribution of myxomycetes living on Cryptomeria japonica bark in Japan

There is little available data on the biogeography of myxomycetes at the regional scale within any given climate zone. To investigate the geographical distribution of these protozoans, we focused on corticolous myxomycetes associated with the bark of Cryptomeria japonica trees, which we sampled extensively throughout Japan. Myxomycete sporophores developed in 73% of 2244 moist-chamber cultures of 188 bark samples from 24 regions, including 31 species. The most abundant species were Paradiacheopsis rigida and Cribraria confusa, which accounted for over 20% of all myxomycetes sampled. Non-metric multidimensional scaling was used to analyze the distribution of myxomycetes in relation to geographical variables and bark pH. The distribution of myxomycetes was influenced by altitude, temperature and bark pH. Temperature gradients and relative abundance of species were negatively correlated in P. rigida and Comatricha laxa and positively correlated in C. confusa, Macbrideora cornea, and Diderma chondrioderma. Bark pH was also positively correlated with the relative abundance of C. confusa, D. chondrioderma, and Physarum nutans and negatively correlated with that of P. rigida, P. cribrata, Enerthnema papillatum, and E. melanospermum. Geographical distribution of corticolous myxomycete communities was determined based on temperature and bark pH, which acted as local barriers in our study area.     

A new species of Lysimachia (Myrsinaceae) from Dabieshan Mountain,China

A new species of Myrsinaceae, Lysimachia jinzhaiensis S.B. Zhou & K. Liu, is described and illustrated from Dabieshan mountain, Anhui, China. It is similar to L. christiniae in the prostrate stem, opposite leaves, yellow flowers born singly in leaf axils, but differs by being glabrous throughout or glandular on young parts, and having quadrangular stem, corolla with densely transparent glandular, orange-red corolla base with lobes being significantly overlapping and contorting to left in bud. Moreover, L. jinzhaiensis have a different karyotype, formulated as 2n = 2m + 2sm + 10st (2SAT) + 10t.     

Genotypical and multiple phenotypical traits discriminate Salix × rubens Schrank clearly from its parent species

Most studies on Salix hybrids concerning the diversity in a hybrid complex included typical morphological characteristics of leaves, buds, twigs and flowers for comparison with genotypic traits. Our analyses are based on a set of phenotypical traits of 19 clones of the S. alba/S. fragilis-aggregate which includes characteristics as phenology, growth, and composition of secondary leaf compounds, for the first time additional to morphological traits. Three clearly distinct groups (S. alba L., S. fragilis L., and S. × rubens Schrank) could be identified based on phenotypical traits and ITS1 and 5.8S nrDNA sequences. S. × rubens revealed additivities at variable ITS1 and 5.8S positions as well as intermediate morphology and secondary compound pattern, but was characterised by significant earlier foliation start. This property leads to a better utilization of the vegetation period and may explain the detected better growth compared to the parent species and therefore also may have contributed to the widespread occurrence of S. × rubens in Central Europe.     

Microbial community and physicochemical dynamics during the production of ‘Chicha’, a traditional beverage of Indigenous people of Brazil

The microbial community of artisanal corn fermentation called Chicha were isolated, purified and then identified using protein profile by Matrix Assisted Laser Desorption Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF) and confirmed by partial ribosomal gene sequencing. Samples from Chicha beverage were chemically characterized by gas and liquid chromatography (HPLC and GC-MS). Aerobic mesophilic bacteria (AMB) (35.8% of total of isolated microorganisms), lactic acid bacteria (LAB) (21.6%) and yeast (42.6%) were identified. Species of the genera Klebsiella, Bacillus, Staphylococcus, Micrococcus, Enterobacter, and Weissella were identified. Rhodotorula mucilaginosa, Lodderomyces elongisporus, Candida metapsilosis, and C. bohicensis were the yeasts found. The LAB isolates detected were responsible for the high concentrations of lactic acid found during the fermentation process (1.2 g L^??1), which is directly related to the decrease in pH values (from 6.95 to 3.70). Maltose was the main carbohydrate detected during corn fermentation (7.02 g L^??1 with 36 h of fermentation). Ethanol was found in low concentrations (average 0.181 g L^??1), making it possible to characterize the beverage as non-alcoholic. Twelve volatile compounds were identified by gas chromatography; belonging to the groups acids, alcohols aldehydes, acetate and others. MALDI-TOF was successfully used for identification of microbiota. Weissella confusa and W. cibaria were detected in the final product (after 36 h of fermentation), W. confusa is often classified as probiotic and deserve further application studies.     

Lonicera confusa has an anatomical mechanism to respond to calcium-rich environment

Calcium (Ca) is an important nutrient element for plant growth and development. Nevertheless, excessive Ca restricts plant communities in Ca-rich environments. Lonicera confusa DC. is one species adapted to Ca-rich environments in the karst area of southwest China; however, the anatomical mechanism that allows these plants to respond to a Ca-rich environment remains unclear. L. confusa was cultivated in two types of soil with controlled Ca levels. The ultrastructure of leaves at different developmental stages was observed, and their Ca contents analyzed by laser scanning confocal microscope and energy-dispersive X-ray spectroscopy. There was no significant difference in leaves between the two experimental groups at very early stages of development. The glands of leaves growing in Ca-rich soil became saturated and showed a steady increase of Ca content in the following stages. The Ca level in leaf trichomes also increased steadily, compared with those from Ca-poor soil. When the leaves matured, Ca salts were excreted via stomata of L. confusa from Ca-rich soil. L. confusa had a special anatomical mechanism of responding to Ca-rich environments by excreting Ca salts via stomata, and storing Ca²⁺ in leaf glands and trichomes.     

Diversity and dynamics of lactic acid bacteria in <Emphasis Type="Italic">Atole agrio</Emphasis>, a traditional maize-based fermented beverage from South-Eastern Mexico,analysed by high throughput sequencing and culturing

The purpose of this work was to analyse the diversity and dynamics of lactic acid bacteria (LAB) throughout the fermentation process in Atole agrio, a traditional maize based food of Mexican origin. Samples of different fermentation times were analysed using culture-dependent and -independent approaches. Identification of LAB isolates revealed the presence of members of the genera Pediococcus, Weissella, Lactobacillus, Leuconostoc and Lactococcus, and the predominance of Pediococcus pentosaceus and Weissella confusa in liquid and solid batches, respectively. High-throughput sequencing (HTS) of the 16S rRNA gene confirmed the predominance of Lactobacillaceae and Leuconostocaceae at the beginning of the process. In liquid fermentation Acetobacteraceae dominate after 4 h as pH decreased. In contrast, Leuconostocaceae dominated the solid fermentation except at 12 h that were overgrown by Acetobacteraceae. Regarding LAB genera, Lactobacillus dominated the liquid fermentation except at 12 h when Weissella, Lactococcus and Streptococcus were the most abundant. In solid fermentation Weissella predominated all through the process. HTS determined that Lactobacillus plantarum and W. confusa dominated in the liquid and solid batches, respectively. Two oligotypes have been identified for L. plantarum and W. confusa populations, differing in a single nucleotide position each. Only one of the oligotypes was detected among the isolates obtained from each species, the biological significance of which remains unclear.     

Growth Promotion and Flowering Induction in Mango (Mangifera indica L. cv “Ataulfo”) Trees by Burkholderia and Rhizobium Inoculation: Morphometric, Biochemical, and Molecular Events

Inoculation of mango trees with Burkholderia caribensis XV and Rhizobium sp. XXV led to mango growth promotion (dry biomass increased in root 89 %, stem 34 %, leaves 51 %, and foliar area 53 %), floral fate (floral buds 100 %), and increased number of flowers (100 %). Nitrogen content in leaves was similar in inoculated and noninoculated trees, around 1.4 % (optimal condition for floral induction). The total foliar nitrogen content increased significantly (56 %) when the microbial inoculation treatment was applied. In addition, the initial content of sucrose, glucose, and fructose in leaves was higher in the microbial inoculation treatment trees but decreased during the evaluated period. The sucrose content in the noninoculated trees presented similar dynamics compared to the microbial inoculation treatment trees, but glucose and fructose showed increased values compared to those of the microbial inoculation treatment. FLOWERING LOCUS T (FT) expression profiles normalized to ACTIN showed similar dynamics but different expression levels: RQ values of 0.03 and 0.05 for noninoculated and microbial inoculation treatments, respectively. In addition, FT expression profiles in microbial inoculation, normalized to the noninoculated treatment, showed an increased FT expression dynamic over time (up to RQ = 2.2), although a drastic decrease in the last sampling date, when all trees presented developed panicles and flowers, was observed. This FT upregulation was in accordance with the flowering induction in that treatment. Temperature had an important influence on mango flowering induction, which was observed for a 1-month period (~10 °C at night and 20 °C during the day). Bud growth that occurred during that period generated mixed and floral buds depending on the exposure time to these inductive temperatures, less than 2 weeks and more than 3 weeks, respectively. Data indicate that inoculation of mango trees with plant growth-promoting rhizobacteria (associated with this crop) is a potential alternative way to promote growth and induce flowering in mango, greatly reducing the high economical costs and environmental contamination associated with traditional agricultural practices.     

Floral analysis as a tool to diagnose iron chlorosis in orange trees

A three-year field experiment was conducted in a commercial orange grove [Citrus sinensis (L.) Osb. cv. `Valencia late' grafted on Citrange Troyer] established on a calcareous soil in the south of Portugal, to investigate if flower analysis could be used to diagnose lime-induced iron chlorosis. In April, during full bloom, flowers and leaves were collected from 20 trees. Leaf samples were again collected from the same trees in May, June, July and August. Total chlorophyll was estimated in all the leaves sampled for foliar analysis, using a SPAD-502 apparatus. Leaves and flowers were analysed for N, P, K, Ca, Mg, Fe, Zn, Mn and Cu. Principal Component Analysis was used to evaluate the variation of nutrient concentrations in flowers, and linear regressions were established between these and the chlorophyll content of leaves 90 days after full bloom. Evaluation of the best-fit equation was carried out using separate data obtained from other groves. Variation in the pattern of floral mineral composition in the flowers showed contrasts between the increase in N, P and K and that of Ca, Fe and Zn, while the concentration of Mg, Mn and Ca varied synchronously. The ratio of Mg:Zn in flowers explained about half of the variation of chlorophyll in leaves later in the season. A ratio below 100 indicated that trees would develop iron chlorosis, while with a ratio above 200 leaves would remain green. An early prognosis of iron chlorosis based on floral analysis can benefit growers, since it allows them to apply treatments in time to prevent loss of fruit yield and quality due to iron chlorosis.     

Frequency-dependent herbivory by a leaf beetle,Phaedon brassicae,on hairy and glabrous plants of Arabidopsis halleri subsp. gemmifera

Frequency-dependent prey choice by natural enemies may influence the coexistence of multiple prey types, but little is known about whether frequency-dependent foraging choice occurs in herbivory on plants showing resistance polymorphism within a single population. Here we examined frequency-dependent foraging by a crucifer-feeding leaf beetle, Phaedon brassicae, on trichome-producing (hairy) and trichomeless (glabrous) plants coexisting within a natural population of the perennial herb Arabidopsis halleri subsp. gemmifera. Larvae of P. brassicae fed on hairy leaves showed slower growth than those fed on glabrous leaves. Although adult beetles consumed similar amounts of leaves when they were fed either hairy or glabrous leaves in no-choice conditions, our choice experiment showed that adult beetles fed at less than the proportionally expected level on hairy leaves compared to glabrous leaves when the hairy leaves were less or equally abundant. Both types of leaves were consumed at the proportionally expected levels when the hairy leaves were more abundant than the glabrous leaves. In a natural population, the leaf damage on the hairy plants was negatively correlated with the local proportion of the glabrous plants in a 1-m diameter patch across 2 years, while correlations between the leaf damage on the glabrous plants and their proportion differed between the 2 years. Additionally, we found five glucosinolates in leaves of A. halleri, but their accumulation did not differ between hairy and glabrous plants. Our experimental results indicate that hairy plants incur less herbivory by P. brassicae when glabrous plants are abundant. The field pattern provides evidence suggestive of frequency-dependent herbivory acting on hairy plants. The present study highlights one of the putative mechanisms of maintaining plant resistance polymorphism.     

Quantitative profiling of polyacetylenes in tissue cultures and plant parts of three species of the Asteraceae

Polyacetylenes are a group of fatty-acid derived specialized metabolites with several C–C-triple bonds and derived compounds which are widely distributed in the plant kingdom, but are especially abundant and structurally diverse in the Asteraceae family. Despite their interesting structural and biological properties, the biosynthesis of polyacetylenes is only poorly understood. We have used three species of the Asteraceae (Carthamus tinctorius, Tagetes patula, and Arctium lappa) to compare their suitability for studies of polyacetylene biosynthesis when used after cultivation on soil or as tissue culture. The polyacetylene profiles detected in different plant parts together with information from the literature indicate that C. tinctorius seedlings and flowers as well as T. patula roots and flower buds are major sites of polyacetylene biosynthesis. Highest levels of polyacetylenes were detected in T. patula [about 30 µmol/g dry weight (d.w.) thiophenes in roots] while A. lappa contained less than 1 µmol/g d.w.. Methyljasmonate (MeJ)-induced T. patula hairy root cultures proved to be an excellent source of butenynyl-bithiophene (200 µmol/g d.w., 43 mg/g d.w.) while T. patula flower buds could serve as a source of pentenynyl-bithiophene and α-terthienyl (5–10 µmol/g d.w.) and C. tinctorius flowers or seedlings as a source of polyacetylenic C₁₃ hydrocarbons, the biosynthetic precursors of thiophenes (5–10 µmol/g d.w.). Upon addition of elicitors to tissue cultures, highest elicitation factors (between four and seven) were reached for 1,11-tridecadiene-3,5,7,9-tetrayne in C. tinctorius cell suspension cultures with 40 µM MeJ and α-terthienyl in T. patula hairy root cultures with 100 µM MeJ.     

Ecological Flexibility in Boutourlini’s Blue Monkeys (Cercopithecus mitis boutourlinii) in Jibat Forest, Ethiopia: A Comparison of Habitat Use, Ranging Behavior, and Diet in Intact and Fragmented Forest

Comparisons of the behavior and ecology of primates living in intact and fragmented forest are critical to the development of conservation strategies for the many primate taxa threatened by habitat loss. From July 2009 to April 2010, we investigated the habitat use, ranging behavior, and diet of two groups of Boutourlini’s blue monkeys (Cercopithecus mitis boutourlinii), a subspecies endemic to western Ethiopia, whose habitats had experienced different levels of disturbance at Jibat Forest. Forest Group occupied primarily continuous tree-dominated forest with little human disturbance whereas Fragment Group inhabited a heavily degraded 2- to 3-km² forest fragment nearly surrounded by farmland and connected tenuously to the continuous forest by a narrow corridor of riverine forest. Mean daily path lengths for both groups were nearly identical (Forest Group: 799 m; Fragment Group: 783 m) and exhibited little seasonal variability. The mean home range areas of Forest Group and Fragment Group were 72.0 and 61.2 ha, respectively. Forest Group (N?=?2232 feeding records) fed mostly on fruits (52.5 %), though they also ate animal prey (14.7 %), young leaves (11.1 %), shoots (8.7 %), and flowers (7.3 %). In contrast, fruits accounted for only 17.0 % of Fragment Group’s diet (N?=?2903 feeding records), with shoots (29.8 %), young leaves (17.1 %), animal prey (13.1 %), seeds (9.6 %), and flowers (6.8 %) also making substantial contributions to their diet. Only Fragment Group engaged in crop raiding, consuming seeds from barley and wheat extensively (33–41 % of diet) during 2 mo. Fragment Group (N?=?33) ate more plant species than Forest Group (N?=?24), though both groups exploited a small number of plant species relative to other subspecies of blue monkeys. Our study revealed that, like most other blue monkey subspecies, Boutourlini’s blue monkeys are quite flexible in the habitats they occupy as well as in their foraging habits. Despite this ecological flexibility, the long-term conservation of Boutourlini’s blue monkey is far from assured given its limited distribution, the rapidly growing human population, and the high rates of forest clearance in western Ethiopia.     

The Tr-cp 14 cysteine protease in white clover (Trifolium repens) is localized to the endoplasmic reticulum and is associated with programmed cell death during development of tracheary elements

Cysteine proteases are known to be associated with programmed cell death, developmental senescence and some types of pathogen and stress-induced responses. In the present study, we have characterized the cysteine protease Tr-cp 14 in white clover (Trifolium repens). Tr-cp 14 belongs to the C1A family of cysteine proteases with homology to XCP1 and XCP2 from Arabidopsis thaliana and p48h-17 from Zinnia elegans, which previously have been reported to be associated with tracheary element differentiation. The proform as well as the processed form of the protein was detected in petioles, flowers and leaves, but the processed form was more abundant in leaves and petioles than in flowers. The Tr-cp 14 protein was localized to differentiating tracheary elements within the xylem, indicating that the cysteine protease is involved in protein re-mobilization during tracheary element differentiation. Immunogold studies suggest that the protease prior to the burst of the vacuole was associated to the ER cisternae. After disruption of the tonoplast, it was found in the cytoplasm, and, in later stages, associated with disintegrating material dispersed throughout the cell.     

Determination of phenolic compounds in flowers of Hypericum species native to South Brazil and Peruvian Páramos

The flowers constitute one of the main sites of accumulation of phenolic compounds in plants of the Hypericum genus. In addition to their important pharmacological activities, some metabolites found in species from the section Brathys and Trigynobrathys appear to have chemotaxonomic significance according to the literature. HPLC analyses were carried out to assess the pattern and accumulation of the dimeric phloroglucinols, benzophenones, benzopyrans, flavonoids and a phenolic acid in flowers of Hypericum species native to southern Brazil and Peruvian Páramos. Qualitative and quantitative differences are reported. Uliginosin B and hyperoside were the main components detected in all species and with maximum concentrations up to 0.188 % in H. caprifoliatum and 5.987 % in H. andinum, respectively. The content of japonicin A varied from 0.003 to 0.087 % in H. myrianthum, while the yield of hyperbrasilol B ranged from 0.006 % in H. laricifolium to 0.011 % in H. caprifoliatum. The major compounds in H. polyanthemum and H. carinatum were the benzopyrans 6-isobutyryl-5,7-dimethoxy-2,2-dimethyl-benzopyran (HP1 = 0.200 %), 7-hydroxy-6-isobutyryl-5-methoxy-2,2-dimethyl-benzopyran (HP2 = 0.225 %) and 5-hydroxy-6-isobutyryl-7-methoxy-2,2-dimethyl-benzopyran (HP3 = 0.327 %) and benzophenones cariphenone A (0.309 %) and cariphenone B (0.062 %), respectively. Maximum amounts of chlorogenic acid, isoquercitrin, quercitrin and guaijaverin were observed, respectively, in H. campestre (1.458 %), H. andinum (1.161 %), H. carinatum (0.231 %) and H. laricifolium (0.404 %). The results obtained support the taxonomic evidence of the dimeric phloroglucinol derivatives at the section level.     

Reference genes selection for quantitative gene expression studies in <Emphasis Type="Italic">Pinus massoniana</Emphasis> L.

Key message

Evaluation and selection of reference genes in Pinus massoniana L. (PM) for gene expression studies of various tissues, floral organ development, and abiotic stress.

Abstract

An important prerequisite for obtaining accurate gene expression results using quantitative real-time PCR is the selection of a reference gene or a group of genes having a highly stable level of expression. Pinus massoniana L. (PM) is the predominant fast-growing timber forest tree species in southern China. In this study of PM, we evaluated various tissues, flowers in different developmental phases, leaves from a cultivar with insect resistance, and leaves from plants under several types of abiotic stresses. Comprehensive Analysis was performed using BestKeeper, Normfinder, geNorm, and RefFinder software to select the most stable reference gene or gene group from among 25 candidate genes in these samples. The results showed that different experimental conditions require the use of different reference genes: ACT1 could be used as a reference gene for all samples in this study; UBI4 was the best gene for various tissues and zinc stress; CYP was the most stable gene for leaves from insect-resistant materials and Pb stress; Fbox and UBI11 were the best reference genes for salt stress; Fbox + RRP8, ARF + TUBA, and EF1B + IDH were the best reference groups for drought stress, low temperature stress, and flowers in different developmental phases, respectively. This study presents a reliable selection of reference genes for Masson pine, and the conclusions are meaningful for improving the accuracy of expression analyses in future molecular biology studies.

     

Can floral consumption by fish shape traits of seagrass flowers?

Seagrasses are marine flowering plants with hydrophilous pollination. This abiotic pollination by water assumes absence of flower-animal interaction, but animals can interfere in this process through consumption of reproductive structures. We studied predation on male flowers by fish for three dioecious seagrass species (Thalassia testudinum, Syringodium filiforme and Halodule wrightii) in the Mexican Caribbean. Seagrass flowers have a highly reduced or absent corolla and florivores directly consumed the anthers with pollen. The foliar structures (tepals, bracts or sheaths) protecting the male flower buds were removed by hand in situ. The floral buds were followed by videos or taking pictures at regular intervals and most (56–100 %, depending on seagrass species and experimental setting) artificially denuded male flower buds were consumed within 24 h by juvenile fish of various species. Histochemical analysis showed that the pollen and embedding mucilage were rich in polysaccharides and proteins, thus potentially nutritious. The seagrasses had copious production of pollen (between 0.2 and 1.2 × 10⁶ pollen per flower, depending on the species). But T. testudinum and S. filiforme were often pollen limited, and the probability of fruit set was reduced ~50 % when the females were at the distance of 1 and 5–6 m from the males flowers, respectively. Under natural conditions, depredation on pre-anthesis male flowers in the three species was low because flower bud emergence (few hours) and pollen release (1–4 h) were ephemeral processes. In addition, the release of pollen of T. testudinum occurred at dusk when herbivorous fish became inactive. These life-cycle characteristics aid to avoid excessive pollen consumption by fish, however, whether they are anti-predator strategies or mere adaptations for submarine pollination remains to be established.