Isolation and characterization of the Erwinia herbicola bio operon and the sequences of the bioA and bioB genes

The biotin operon of Erwinia herbicola was cloned and characterized. The operon consists of five genes arranged in the order, bioABFCD. The operon is negatively regulated via the interaction of a proposed biotin repressor with an operator sequence that lies between the bioA and bioB genes. The nucleotide sequences of bioA (7,8-diaminopelargonic acid transferase), bioB (biotin synthetase) and the regulatory region were determined and analyzed. The deduced amino acid sequences of bioA and bioB are also aligned with currently available homologs to obtain the UPGMA (unweighted pair group method with arithmetic mean) evolutionary tree.     

Comparison of the archaeal community in the fermentative compartment and faeces of the cow and the rabbit

The archaeal community in the fermentative compartment and faeces of the cow and the rabbit were compared by analysis capillary electrophoresis single-stranded conformation polymorphism (CE-SSCP) profiles of 16S rRNA genes. Ruminal and faecal contents were sampled in five cows for three weeks. Hard and soft faeces were collected in 14 rabbits for three consecutive weeks and cæcal contents were sampled in the third week. The archaeal community differed according to the host species (ANOSIM-R = 0.53 and 0.72 respectively for the comparison of the fermentative compartments and faeces; P < 0.001) and to the location within the digestive tract of both species (ANOSIM-R = 0.37, 0.52 respectively for the cow and the rabbit; P < 0.001). In both species, the archaeal community of the digestive tract was stable over weeks and varied very little between individual animals. The structure (NS) and the richness index (9.9 ± 2.7, 10.1 ± 3.1 respectively, NS) of the archaeal community were similar for the cæcal content and the soft faeces which permitted to use the latter as a representative indicator.     

Biophysics and Structure of the Patch and the Gigaseal

Interpreting channel behavior in patches requires an understanding of patch structure and dynamics, especially in studies of mechanosensitive channels. High resolution optical studies show that patch formation occurs via blebbing that disrupts normal membrane structure and redistributes in situ components including ion channels. There is a 1-2 μm region of the seal below the patch where proteins are excluded and this may consist of extracted lipids that form the gigaseal. Patch domes often have complex geometries with inhomogeneous stresses due to the membrane-glass adhesion energy (E_a), cytoskeletal forces, and possible lipid subdomains. The resting tension in the patch dome ranges from 1-4 mN/m, a significant fraction of the lytic tension of a bilayer (∼10 mN/m). Thus, all patch experiments are conducted under substantial, and uneven, resting tension that may alter the kinetics of many channels. E_a seems dominated by van der Waals attraction overlaid with a normally repulsive Coulombic force. High ionic strength pipette saline increased E_a and, surprisingly, increased cytoskeletal rigidity in cell-attached patches. Low pH pipette saline also increased E_a and reduced the seal selectivity for cations, presumably by neutralizing the membrane surface charge. The seal is a negatively charged, cation selective, space with a resistance of ∼7 gigohm/μm in 100 mM KCl, and the high resistivity of the space may result from the presence of high viscosity glycoproteins. Patches creep up the pipette over time with voltage independent and voltage dependent components. Voltage-independent creep is expected from the capillary attraction of E_a and the flow of fresh lipids from the cell. Voltage-dependent creep seems to arise from electroosmosis in the seal. Neutralization of negative charges on the seal membrane with low pH decreased the creep rate and reversed the direction of creep at positive pipette potentials.     

On the karyotype of the tahr Hemitragus jemlahicus and the Y-chromosome of goats and sheep

Somatic chromosomes of a female and male Himalayan thar, Hemitragus jemlahicus (H. Smith) are described. The diploid number is 48, there are 12 atelocentric and 34 telocentric autosomes in both sexes, the X-chromosome is meta- or submetacentric. The morphological appearance of the Y-chromosome is compared with that of other bovid species including recent observations on the goat Capra hircus.Supported by Contract No. PH 43-63-13 between the National Cancer Institute of the National Institutes of Health and the University of California.     

Laccase of the lignolytic fungus Trametes hirsuta: Purification and characterization of the enzyme, and cloning and primary structure of the gene

The main physicochemical characteristics of the major isoform of the laccase secreted by the fungus Trametes hirsuta 072 were studied. The enzyme belongs to the group of high redox potential laccases (E _T1 ⁰ 790 ± 5), and it oxidizes with high efficiency various substrates of phenolic nature. The gene of this isoform was cloned, and its nucleotide sequence was determined. The length of the complete gene is 2134 bp. It comprises 11 exons and 10 introns. Analysis of the amino acid sequence of T. hirsuta 072 laccase demonstrated a high homology to the other laccases secreted by fungi of the genus Trametes.     

The volume and area of the capillaries in the endocrine and exocrine pancreas of the rat

Summary The capillary volumes in the endocrine and exocrine parenchyma of the pancreas were compared with a point-sampling technique. The islets were found to have a capillary volume of approximately 3.5%, while the value for the exocrine pancreas was significantly (P<0.001) lower at 2%. When the capillary wall area was measured, however, both types of parenchyma had a similar value of approximately 20 mm²/mm³ tissue. The reason for the discrepancy between these parameters is probably the lack of lymphatic capillarics, with their relatively small lumen in the islets.     

Studies on the iodination of LH-RH and the biological and immunological activities of the products

Synthetic LH-RH was iodinated by the modified chloramine-T or lactoperoxidase method, using ¹²⁷INa or ¹²⁵INa. The yields of the products, the LH releasing activities of the monoiodinated peptides as well as binding to pituitary membrane fractions were measured. The variation in yield in the four procedures used for iodination was a function of the amount of oxidizing agent. Monoiodinated products obtained by the different procedures possessed comparable LH-releasing activities as well as binding affinity to pituitary plasma membranes.     

Morphology and development of the macronuclei of the ciliates Stylonychia mytilus and Euplotes aediculatus

Some stages of macronuclear anlagen development, known from earlier investigations (see Fig. 1), were studied in detail. The results are: a) The giant chromosomes of Stylonychia mytilus are not somatically paired, but are connected end-to-end to form one or a few composite chromosomes. When they later disintegrate, the bands become isolated granules. b) Spectrophotometric measurements show that during the DNA-poor stage which follows the disintegration of the chromosomes, the macronuclear anlagen of Euplotes have a DNA content of 21 c, while the syncaryotic (deriving from syncarya) and hemicaryotic (deriving from haploid hemicarya) anlagen of Stylonychia have the DNA content of diploid micronuclei (2c). Nevertheless the syncaryotic anlagen of Stylonychia and Euplotes initially develop two nucleoli at the end of this stage, the hemicaryotic anlagen of Stylonychia only one. From this it is concluded that the genes of one giant chromosome band stay together in one granule, c) Labeled DNA from the giant chromosomes which remains in the anlagen during the DNA-poor stage is distributed approximately equally to the daughter nuclei during the first few fissions of the exconjugants.-Autoradiographic experiments showed that the DNA of the macronuclei of Stylonychia that is duplicated at one time in a replication band is not duplicated simultaneously during the next DNA-duplication. The DNA duplications during the second polyploidization stage of the macronuclear anlagen development are exceptions, because the mixing of the macronuclear DNA which occurs before every fission does not occur during the second polyploidization stage.—The pseudomicronuclei which sometimes are formed from the macronuclei in emicronucleated strains of Stylonychia contain numerous elements which are much smaller than the chromosomes.—The macronucleus of Stylonychia is very insensitive to irradiation with X-rays.—The results lead to the following hypothesis: The macronuclei of the two hypotrich ciliates contain unconnected chromomeres or small aggregates which are distributed at random to the two daughter nuclei during the divisions.Research supported by the Deutsche Forschungsgemeinschaft.     

Characterization of the ATPase and unwinding activities of the yeast DEAD-box protein Has1p and the analysis of the roles of the conserved motifs

The yeast DEAD-box protein Has1p is required for the maturation of 18S rRNA, the biogenesis of 40S r-subunits and for the processing of 27S pre-rRNAs during 60S r-subunit biogenesis. We purified recombinant Has1p and characterized its biochemical activities. We show that Has1p is an RNA-dependent ATPase in vitro and that it is able to unwind RNA/DNA duplexes in an ATP-dependent manner. We also report a mutational analysis of the conserved residues in motif I (⁸⁶AKTGSGKT⁹³), motif III (²²⁸SAT²³⁰) and motif VI (³⁷⁵HRVGRTARG³⁸³). The in vivo lethal K92A substitution in motif I abolishes ATPase activity in vitro. The mutations S228A and T230A partially dissociate ATPase and helicase activities, and they have cold-sensitive and lethal growth phenotypes, respectively. The H375E substitution in motif VI significantly decreased helicase but not ATPase activity and was lethal in vivo. These results suggest that both ATPase and unwinding activities are required in vivo. Has1p possesses a Walker A-like motif downstream of motif VI (³⁸³GTKGKGKS³⁹⁰). K389A substitution in this motif significantly increases the Has1p activity in vitro, which indicates it potentially plays a role as a negative regulator. Finally, rRNAs and poly(A) RNA serve as the best stimulators of the ATPase activity of Has1p among the tested RNAs.     

Optical properties and the content of photosynthetic pigments in the stems and leaves of the apple-tree

Optical properties and changes in the content of photosynthetic pigments (chlorophyll and total carotenoids) were investigated in the bark and leaves of the apple-tree during a year. Optical properties of stems change with their age. Light reflectance of current year stems equalled 14.2%, while the one for 3-year-old stems decreased to 10.2%, absorption for the current year stems equalled 55.5% and increased up to 66.4% for 3-year-old ones. Light transmittance for the cork of current year stems equalled 30.2%, and decreased with the age of stems reaching 23.4% for the 3-year-old ones. The cork transmitted less than 5% of light of 400 nm, but the transmittance increased with the increase in the wavelength up to 55% at 700 nm. The reflectance of light by the leaf equalled 6.9%, absorption 89.7%, and transmittance 3.4%. In August the highest amount of chlorophyll pigments (6.2 mg·dm⁻²) and carotenoids (1.63 mg·dm⁻²) was detected in the leaves of the apple-tree, however, the ratio of chl a/b reached the highest value 4.12 in June. For the bark of apple-tree stems the content of chlorophyll pigments increased since spring and reached the maximum content of about 2.8 mg(chl)·dm⁻² for 1-3-year-old stems in the summer months, while for the current year stems in October. The ratio chl a/b was at the same level, about 2.2 during the whole year. The content of carotenoids was lower in stems than in leaves and was at the similar level during the year, however, it increased with the age of stems. Minor changes in the optical properties and the content of photosynthetic pigments occurring with the age of stems may be due to the low increment in cork thickness in the studied age groups of plants.     

The effect of the substrate on the growth and reproduction of the lichens Cladonia rangiferina and C. mitis

The growth rate and percentage of fertile individuals were studied in the lichens Cladonia rangiferina and C. mitis growing on various substrates in a heath-lichen pine forest and a bilberry-cowberry pine forest with Pleurozium and other mosses, both on the White Sea coast. The substrates were soil, rocks, and pine wood. The proportion of different forms of C. rangiferina growing on the same substrate was compared between the two forest types. C. rangiferina f. rangiferina was more abundant on soil, while C. rangiferina f. crispata dominated on wood. The effect of the substrate on the development of different lichen forms is discussed. The maximum growth rate and the maximum percentage of fertile individuals were recorded in the lichens growing on soil; these parameters were minimal in the lichens growing on wood. These differences were more pronounced in C. rangiferina than in C. mitis. The effects of the nutritive quality and the humidity of the substrate on the growth rate and apothecia formation in lichens are discussed.     

Equilibrium and Kinetic Properties of the Interaction between Tetrodotoxin and the Excitable Membrane of the Squid Giant Axon

Squid giant axons were treated with tetrodotoxin (TTX) in concentrations ranging from 1 nM to 25 nM and the resulting decrease in sodium current was followed in time using the voltage clamp technique. The removal of TTX from the bathing solution produced only partial recovery of the sodium current. This suggests that the over-all interaction is more complex than just a reversible reaction. By correcting for the partial irreversibility of the decrease in sodium current, a dissociation constant of 3.31 x 10^-9 M was calculated for the reaction between TTX and the reactive site of the membrane. The data obtained fit a dose-response curve modified to incorporate the correction for partial irreversibility when calculated for a one-to-one stoichiometry. The fit disagreed with that calculated for a reaction between two molecules of TTX with a single membrane-reactive site, but neither supported nor disproved the possibility of a complex formed by two reactive sites with one molecule of TTX. Values of the rate constants for the formation and dissociation of the TTX-membrane complex, k ₁ and k ₂, respectively, were obtained from the kinetic data. The values are: k ₁ = 0.202 x 10⁸ M ^-1, and k ₂ = 0.116 min^-1. The magnitude of the dissociation constant derived from these values is 5.74 x 10^-9 M, which has the same order of magnitude as that obtained from equilibrium measurements. Arrhenius plots of the rate constants gave values for the thermodynamic quantities of activation.     

GTPases and the origin of the ribosome

Background  

This paper is an attempt to trace the evolution of the ribosome through the evolution of the universal P-loop GTPases that are involved with the ribosome in translation and with the attachment of the ribosome to the membrane. The GTPases involved in translation in Bacteria/Archaea are the elongation factors EFTu/EF1, the initiation factors IF2/aeIF5b + aeIF2, and the elongation factors EFG/EF2. All of these GTPases also contain the OB fold also found in the non GTPase IF1 involved in initiation. The GTPase involved in the signal recognition particle in most Bacteria and Archaea is SRP54.     

Development of the hyaline layer around the planktonic embryos and larvae of the asteroid Patiriella calcar and the presence of associated bacteria

Summary

The hyaline layer (HL) around the embryos and larvae of Patiriella calcar is examined by transmission electron microscopy. P. calcar hatches at the gastrula stage and develops through a lecithotrophic planktonic brachiolaria. The hyaline layer of unhatched P. calcar is poorly developed and is comprised of wispy fibrils scattered among the epithelial microvilli. Fibrils are also occasionally seen associated with the inner surface of the fertilization envelope. By the hatched gastrula stage, the hyaline layer is organized into three strata: the intervillous layer, the supporting layer and the coarse outer meshwork layer. Seven-day-old brachiolaria also have a hyaline layer comprised of three strata. In these larvae the supporting layer elevates away from the epithelial surface due to the tuft-like organization of the underlying microvilli. This results in the formation of local outpockets giving the surface of the HL a lobed appearance. Bacteria are occassionally seen in the intervillous layer, particularly in association with the outpockets. These bacteria are phagocytosed by the epithelial cells and, in larvae that have bacteria, may play an augmentive role in larval nutrition. The structure of the hyaline layer of P. calcar is compared with that of the hyaline layer of other Patiriella species to determine if it is more similar to the external coats around its planktonic (P. regularis) or benthic (P. exigua) developing congeners. The comparison shows that the hyaline layer of P. calcar is virtually identical to that of P. regularis, a similarity that may reflect the pelagic life histories of these species.     

Comparison of the Web-Based and Digital Questionnaires of the Spanish and Catalan Versions of the KIDSCREEN-52

Background

The objectives of the study were to develop web-based Spanish and Catalan versions of the KIDSCREEN, and to compare scores and psychometric properties with the paper version.

Methods

Internet and paper Spanish and Catalan versions of the KIDSCREEN-52 were included in a cross-sectional study in school-age children. Web-based and paper Spanish or Catalan versions of the KIDSCREEN-52 were administered to students aged 8 to 18 years from primary and secondary schools in Palafolls (Barcelona, Spain, n = 923). All students completed both web-based and paper versions during school time with an interval of at least 2 hours between administrations. The order of administration was randomized. The KIDSCREEN-52, the Strengths and Difficulties Questionnaire (SDQ), and sociodemographic variables were collected. Missing values, floor and ceiling effects, and internal consistency were compared between both versions, as well as mean score differences, level of agreement, and known groups and construct validity.

Results

Participation rate was 77% (n = 715). Web-based and paper versions showed low percentage of missing values and similar high ceiling effect (range 0 to 44%). Mean score differences showed an effect size (ES) lower than 0.2 in all dimensions. Internal consistency ranged from 0.7 to 0.88, and degree of agreement was excellent (Intraclass correlation coefficient [ICC] range 0.75 to 0.87). Expected differences were seen by sex, age, socioeconomic status and mental health status.

Conclusions

The web-based KIDSCREEN-52 showed similar scale score and reliability and validity than the paper version. It will incorporate the child population in the assessment of quality of life providing a more attractive format.     

Theoretical Study of the TiO2 and MgO Surface Acidity and the Adsorption of Acids and Bases

We present ab-initio periodic Hartree–Fock calculations (crystal program) of small molecules on TiO₂ and MgO. The adsorption of the molecules may be molecular or dissociative. This depends on their acid and basic properties in the gas phase. For the molecular adsorption, the molecules are adsorbed as bases on Ti(+IV) sites, the adsorption energies correlate with the proton affinities. The dissociations on the surface correlate with the gas phase cleavages: thus, the dissociation of MeOH leads to a preferential basic cleavage (the fragment HO– is adsorbed on a Ti⁺⁴ ion and the fragment Me⁺ is adsorbed on a O²– ion of the oxide). The opposite result is obtained with MeSH. Another important factor is the adsorbate–adsorbate interaction: favorable cases are a sequence of H-bonds for the hydroxyl groups resulting from the water dissociation and the mode of adsorption for the ammonium ions. Lateral interactions also force the adsorbed CO₂ molecules to bend over the surface so that their mutual orientation resembles the geometry of the CO₂ dimer. With respect to water adsorption, MgO appears to be a basic oxide. As experimentally observed, NH₃ adsorbs preferentially on TiO₂ and CO₂ on MgO. However, this difference of reactivity should not be expressed in terms of acid vs. basic behaviour but in terms of hard and soft acidity. The MgO surface is a 'soft' acidic surface that reacts preferentially with the soft base, CO₂.     

Shape of the pelvis and posture of the hindlimbs inPlateosaurus

The pelvis ofPlateosaurus is examined from a biomechanical point of view. The shape of the acetabulum in particular is analysed in order to determine the range of possible directions of the forces exchanged between femur and pelvis. These forces must have been more or less confined to a sagittal plane. From a quasi-static analysis under consideration of the major hip muscles ofPlateosaurus, a nearly but not fully extended posture of the hindlimbs can be deduced. The hip joints ofPlateosaurus and probably of some other dinosaurs with a narrow biacetabular width were balanced rather by adducting than by abducting muscles.     

Volume and Rate Parameters of the Respiratory System and the State of the Vocal Apparatus

The parameters of permeability of the tracheobronchial tree were shown to determine the frequency characteristics of the voice and the functional state of the vocal apparatus.__________Translated from Fiziologiya Cheloveka, Vol. 31, No. 3, 2005, pp. 72–75.Original Russian Text Copyright © 2005 by Agadzhanyan, Smirnova.     

Determination of contents of the microelements in the blood and the hair of the Han,Uygur and Kazak people

Atomic absorption spectrometry is used to determine the contents of microelements (such as Zn, Cu, Ca, Mg and Fe) in the all-blood and hair of the Han, Uygur, and Kazak people in normal health state. The results show that the above mentioned elements in the hair arranged successively as Ca>Zn>Mg>Fe>Cu and those in the all-blood of the Han people arranged as Fe>Mg>Ca>Zn>Cu; of the Uygur and Kazak people, as Fe>Mg>Ca>Zn>Cu. This paper reports that the content of the microelement Mg in the all-blood and hair of the Uygur and Kazak people is obviously higher than that of the Han people (P<0.05).     

Ambiguity and the evolution of the genetic code

The evolution of the genetic code is an extremely complex problem. The addition of a new method by which the code could evolve, however, allows much to be explained about the way in which the present codes (₃ and ₃ ) originated. The idea that ambiguity would allow the length of the codon to change is very useful, since it predicts the distribution of the 4-blocs and 2-blocs in the code, determines where variations in the code are probable, and presents a scenario for the evolution of the code.