POPULATION GENETIC STRUCTURE OF FINLESS PORPOISES, NEOPHOCAENA PHOCAENOIDES, IN CHINESE WATERS, INFERRED FROM MITOCHONDRIAL CONTROL REGION SEQUENCES

Seven hundred and twenty base pairs (bp) of the mitochondrial control region from 73 finless porpoises, Neophocaena phocaenoides , in Chinese waters were sequenced. Thirteen variable sites were determined and 17 haplotypes were defined. Of these, 5 and 7 were found only in the Yellow Sea population and the South China Sea population, respectively, whereas no specific haplo-type was found in the Yangtze River population. Phylogenetic analyses using NJ and ML algorithm did not divide the haplotypes into monophyletic clades representing recognized geographic populations of finless porpoises in Chinese waters, suggesting the existence of migration and gene flow among populations. Analysis of molecular variance showed the obvious population genetic structure (φ_st= 0.41, P < 0.05); however, the structure was mainly between either the Yangtze River population or the Yellow Sea population and the South China Sea population. The genetic diversity (nucleotide diversity and haplotypic diversity) of the Yellow Sea population was significantly higher than those of the Yangtze River population and the South China Sea population, suggesting the relatively later divergence of the latter two populations and supporting the Yellow Sea population as the original center of Neophocaena .     

Sequence Polymorphism and Geographical Variation at a Positively Selected MHC-DRB Gene in the Finless Porpoise (Neophocaena phocaenoides): Implication for Recent Differentiation of the Yangtze Finless Porpoise?

Sequence polymorphism at the MHC class II DRB locus was investigated in three finless porpoise (Neophocaena phocaenoides) populations in Chinese waters. Intragenic recombination and strong positive selection were the main forces in generating sequence diversity in the DRB gene. MHC sequence diversity changed significantly along the study period. Significant decrease in heterozygosity and lost alleles have been detected in the Yangtze River population and South China Sea population since 1990. Furthermore, there is a trend of increasing population differentiation over time. Especially, the genetic differentiation between the Yangtze River population and the Yellow Sea population was very low prior to 1990 (F _ST = 0.036, P = 0.009), but became very significant after 1990 (F _ST = 0.134, P < 0.001), suggesting a recent augmentation of genetic differentiation between both populations probably in a relatively short-term period. Porpoises from the Yangtze River displayed divergent frequencies of shared and private alleles from those displayed by two marine populations, which suggest that the former riverine population has been under a different selection regime (characteristic of a fresh water environment) than that of its marine counterparts.     

渤海江豚种群现状初探

渤海是黄渤海江豚种群的重要分布区,但是有关该区域江豚的种群数量的资料极其匮乏。2015年至2016年,采用截线抽样法在渤海水域开展了6个航次的目视调查,收集了渤海江豚的分布数据,首次评估了区域内的江豚种群数量,为制定有效的渤海江豚种群生态保护策略提供了基础资料。调查结果显示,在2015年8月、2016年5~7月、9月和11月进行的6个调查航次共计8972 km的有效航程中,发现江豚87次、136头次。江豚在渤海各海湾和中部水域都可观察到;14:00-18:00时段、离岸15~35km范围内较易观察到江豚;黄河口外、秦皇岛东北侧老龙口和莱州外沿岸河口水域,江豚出现频次较多。各季节中,以5月在黄河口外20~40km范围内发现江豚的频次和数量最多。采用Distance 7.0软件估算渤海江豚种群数量,其中探测概率分别取值0.399、0.85和1时,渤海江豚种群数量估算值分别为7883头（CV=0.21）、3701头（CV=0.21）和3124头（CV=0.21）,对应的种群密度分别为1.441头/km2、0.066头/km²和0.056头/km²,均低于已报道的南黄海和日本海江豚种群相应值。受海上天气、调查条件和经验所限,本文估值可能存在偏差,但限于渤海江豚历史资料缺乏的现状,本文的结果对于认识渤海江豚的种群状况仍具有重要参考意义。     

Development of tetranucleotide microsatellite loci for the finless porpoise (<Emphasis Type="Italic">Neophocaena phocaenoides</Emphasis>)

The finless porpoise, Neophocaena phocaenoides, is endemic to the coastal waters of the Indo-Pacific, ranging from the Persian Gulf to Japan. Nine tetranucleotide microsatellite loci were isolated from the finless porpoise (Neophocaena phocaenoides). Polymorphism of each locus was assessed in 39 unrelated individuals from the Yellow Sea and the South China Sea of the Chinese waters. The number of alleles per locus varied from 2 to 11. The ranges of observed and expected heterozygosity were 0.154–0.795 and 0.146–0.839, respectively. Cross-species amplification of these loci was tested in other cetacean species. These microsatellite markers described here will be suitable for population genetic studies of finless porpoises and other cetacean species.     

固化河岸对长江江豚栖息活动的影响

长江江豚主要栖居在近岸浅水水域,喜好泥沙质类型的河岸。但在长江干流,有很多自然河岸被固化,河岸固化给长江江豚分布和栖息活动造的影响仍不甚清楚。2016年3月—2017年1月,对长江干流2个自然河段江豚的数量和分布做了12次考察,并收集了这2个河段岸型的相关数据,来分析固化河岸对江豚栖息活动的影响。12次考察累计发现江豚215头次,平均每次考察观察到江豚(17.92±7.09)头次。研究区域的固化河岸约占岸线总长的59%,分析发现,仅约13.9%的江豚分布在固化河岸水域,86.1%的江豚均分布在自然河岸水域。江豚在单位河岸长度的分布数量与该段固化河岸长度所占的比例呈显著负相关(r=-0.639,P0.01)。在自然河岸,分布在近岸50 m水域的江豚占31.8%,而在固化河岸,仅观察到2头江豚活动在近岸50 m水域内。由此可见,固化河岸对江豚的近岸分布有明显影响。调查还发现,安庆城区建设带约10 km江段12次考察均未发现江豚分布,城区建设带可能对江豚栖息已造成严重影响。长江干流的固化河岸所占比例非常高,研究结果提示这可能导致长江干流江豚栖息地的丧失和破碎化加剧,在制定长江江豚保护措施必需慎重考虑此因素的影响,并据此提出相应的栖息地保护和恢复方案。     

High MHC DQB Variation and Asymmetric Allelic Distribution in the Endangered Yangtze Finless Porpoise, Neophocaena phocaenoides asiaeorientalis

The endangered Yangtze finless porpoise is found in the middle and lower reaches of the Yangtze River and its adjoining big lakes. To explore the major histocompatibility complex (MHC) genetic diversity and allelic distribution patterns across its range, we investigated variation at DQB exon 2. From 76 porpoises, we identified 18 DQB sequences. The freshwater Yangtze populations had much higher allelic diversity than marine populations. Among these freshwater populations, the middle-reach population had higher allelic diversity than the lower-reach population. The high DQB diversity level, relative to that of a neutral mtDNA locus, suggests that balancing selection is acting at the DQB gene and that rapid evolution and local positive selection play critical roles in generating and retaining high MHC diversity in the freshwater population. As the balancing selection might be driven by environmental pathogens, we suggest that maintaining MHC variation should be a high priority in the conservation and management of this endangered population, especially as an ex situ conservation strategy.     

天鹅洲迁地保护江豚群体的遗传评估与发展预测

文章以2008年春季遭受严重雪灾的天鹅洲白鱀豚国家级自然保护区迁地保护江豚群体为研究对象,利用物种特异性微卫星遗传标记对该群体的遗传多样性进行了评估,并通过软件对其发展趋势进行了模拟和预测。研究结果表明,虽然2008年春季雪灾并未导致该群体遗传多样性的严重损失,灾后群体依然表现出中等水平的微卫星遗传多样性(18个座位的平均等位基因数为4.780,平均观察杂合度和期望杂合度分别为0.748和0.674);但模拟结果显示,该迁地保护江豚群体的遗传多样性将快速下降,100年后仅能保留约79%的等位基因和约84%的遗传杂合度。此外,模拟结果表明,通过增加群体数量和调整群体性比可有效减缓该群体遗传多样性的下降速度。根据研究结果,并结合长江江豚自然种群快速下降的现状,作者提出天鹅洲迁地保护江豚群体当前最重要的保护策略应该是尽早补充一定数量的、合适的野生个体,在加强遗传多样性保护的同时使其群体数量快速增长并形成一个更大规模的有效繁殖群体。     

长江安庆段航道整治对长江江豚数量和分布的时空影响

栖息地丧失和破碎化是威胁长江江豚(Neophocaena asiaeorientalis)种群长期发展的主要因素之一。航道整治工程是导致江豚栖息地丧失和破碎化的一个主要原因,研究工程施工和运行对江豚数量和分布的影响可为江豚栖息地管护提供有益信息。通过对湖口-吉阳矶水域江豚数量和分布的持续调查,分析了安庆段航道整治工程施工和运行对江豚的影响。12次目视调查共在研究水域发现江豚258群次613头次,工程施工前、施工期和初步运行期单次考察分别平均观察到江豚(67.0±24.3)头次、(35.6±22.2)头次和(50.0±2.8)头次。在主要施工区共发现江豚79群次185头次,施工前、施工期和初步运行期单次考察分别平均观察到江豚(18.60±12.03)头次、(10.4±7.3)头次和(20.0±4.2)头次。工程不同时期主要施工区江豚的数量及占比在统计学上没有显著差异。主要施工区S2和S3工程段施工期江豚平均分布密度((0.18±0.17)头/km、(0.04±0.08)头/km)较施工前((0.62±0.16)头/km、(0.40±0.29)头/km)显著下降,S5和S6工程段施工期平均...     

长江江豚繁殖生物学研究概述

长江江豚,即江豚扬子亚种,是仅分布于长江及附属湖泊中的唯一江豚淡水亚种,也是3个江豚亚种中最濒危的一个亚种。本文概述了30 年来国内外关于长江江豚繁殖生物学方面的研究成果,主要从繁殖生态学、组织解剖学、生理学以及行为学等4 个方面阐述了长江江豚繁殖生物学研究现状,并对其中一些相互矛盾和有争议的问题进行了分析。探讨了今后研究中应注意的重点问题,力图为长江江豚的繁殖生物学研究指明方向,为早日实现长江江豚的人工繁殖奠定基础。
     

中国水域江豚颅骨的地理变异

本文根据１４４号江豚骨骼标本（其中长江种群标本４０号,黄海种群标本５９号,南海种群标本４５号）,选用４２项颅骨测量变量,研究了颅骨在各地理种群之间的差异。ｔ－检验和协方差分析表明：长江江豚成体的颅基长比较小。南海种群吻长小于其它两个种群,而吻宽则最大,长江种群次之,黄海种群最小。黄海种群的前颌骨宽、颧宽、眶前突最大宽和眶后突最大宽比其它两个种群的小。黄海种群的上颌齿较多,而南海种群则下颌齿较多,长     

中国水域江豚颅后骨骼的地理变异

本文根据142号各年龄段的江豚颅后骨骼标奉(其中长江种群标本38号,黄海种群标本59号,南海种群标本45号),选用42项颅后骨骼变量,应用t-检验、协方差分析和判别分析,研究了颅后骨骼在各地理种群之间的变异。结果表明,(1)中国水域江豚不同种群之间在颅后骨骼上的差异是明的,而且表现在包括初生幼体在内的所有年龄段的标本中。0)南海种群的颅后骨骼最发达,长江次之,黄海种群的最不发达。(3)黄海种群与长江种群的差异较小,与南海种群的差异较大;南海种群与长江种群的差异相对最大。(4)颅骨发生的适应性变化比其外形的变化要慢,而颅后骨骼的变化比颅骨的变化还要慢．     

First human-caused extinction of a cetacean species?

The Yangtze River dolphin or baiji (Lipotes vexillifer), an obligate freshwater odontocete known only from the middle-lower Yangtze River system and neighbouring Qiantang River in eastern China, has long been recognized as one of the world's rarest and most threatened mammal species. The status of the baiji has not been investigated since the late 1990s, when the surviving population was estimated to be as low as 13 individuals. An intensive six-week multi-vessel visual and acoustic survey carried out in November-December 2006, covering the entire historical range of the baiji in the main Yangtze channel, failed to find any evidence that the species survives. We are forced to conclude that the baiji is now likely to be extinct, probably due to unsustainable by-catch in local fisheries. This represents the first global extinction of a large vertebrate for over 50 years, only the fourth disappearance of an entire mammal family since AD 1500, and the first cetacean species to be driven to extinction by human activity. Immediate and extreme measures may be necessary to prevent the extinction of other endangered cetaceans, including the sympatric Yangtze finless porpoise (Neophocaena phocaenoides asiaeorientalis).     

Seasonal changes in the local distribution of Yangtze finless porpoises related to fish presence

The Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis) is an endangered freshwater porpoise subspecies unique to the Yangtze River basin. Seasonal variations in local distribution of the animal, as well as fish presence, sand dredging, ship navigation, and bridges were examined as potential factors affecting the occurrence of the animals. Passive acoustic surveys were performed regularly from May 2007 to August 2010, near the conjunction of the Yangtze River and Poyang Lake. The distribution of the porpoises was seasonally site‐specific. In May and August, the animals were detected more often at river junctions than in the lake, but vice versa from November to February. The rate of the porpoise detection was significantly higher in areas of fish presence than in areas of absence. The number of porpoises detected did not differ significantly between the sand dredging operation and the prohibition period (in 2008), although the number of vessels obviously declined in 2008. Ship traffic and bridges also did not appear to affect the presence of porpoises. These results showed the relative importance of the various environmental factors, which is important for conservation of not only Yangtze finless porpoise but also endangered isolated cetaceans.     

Population Genetic Structure of the Yangtze Finless Porpoise (Neophocaena phocaenoides asiaeorientalis): Implications for Management and Conservation

Understanding the population genetic structure is a prerequisite for conservation of a species. The degree of genetic variability characteristic of the mitochondrial DNA control region has been widely exploited in studies of population genetic structure and can be useful in identifying meaningful population subdivisions. To estimate the genetic profile of the Yangtze finless porpoise (Neophocaena phocaenoides asiaeorientalis), an endangered freshwater population endemic to China, the complete mtDNA control region was examined in 39 individuals belonging to seven different stocks inhabiting the middle and lower reaches of the Yangtze River. Very low genetic diversity was found (nucleotide diversity 0.0011± 0.0002 and haplotypic diversity 0.65± 0.05). The mtDNA genetic pattern of the Yangtze population appears to indicate a founder event in its evolutionary history and to support the marine origin for this population. Analyses by F_st and Φ_st yielded statistically significant population genetic structure (F_st = 0.44, P < 0.05; Φ_st = 0.36, P < 0.05). These results may have significant implications for the management and conservation of the Yangtze finless porpoise in the future.     

High level population differentiation of finless porpoises (Neophocaena phocaenoides) in Chinese waters revealed by sequence variability of four nuclear introns

In the present study, sequence variations at four nuclear introns which were respectively from the parathyroid hormone-like (PTH) gene, isolate Pdalz1692 interferon (IFN) gene, peripherin-like (RDS) gene, and tyrosine kinase receptor-like (KIT) gene, were examined to analyze genetic diversity and population structure of the finless porpoise (Neophocaena phocaenoides) in Chinese waters. High among-population differentiation was revealed, with a significant genetic structure between populations (PTH: F(ST) = 0.29, P < 0.001; IFN1@: F(ST) = 0.23, P < 0.001; RDS: F(ST) = 0.12, P < 0.001; KIT: F(ST) = 0.16, P < 0.001) shown by the analysis of molecular variance. Although common haplotypes accounted for more than one half of all samples examined, many haplotypes were found to be population-specific. The Tajima's D, Fu's tests and mismatch distributions all suggested a recent colonization and population expansion of finless porpoises in Chinese waters. In view of special reference to the conservation priority of the Yangtze finless porpoises, special protection measures must be taken urgently for this population.     

The Diel Rhythms of Biosonar Behavior in the Yangtze Finless Porpoise (Neophocaena asiaeorientalis asiaeorientalis) in the Port of the Yangtze River: The Correlation between Prey Availability and Boat Traffic

Information on the habitat use of the critically endangered Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis) is critical for its conservation. The diel biosonar behavior of the porpoise in the port areas of the Yangtze River was examined along with simultaneous observations of fish density and boat traffic. Biosonar pulses from the porpoises were detected for 1233 min (5.77%) over a 21,380 min duration of effective observations. In total, 190 (5.63%) buzzes (an indication of prey capture attempts) were recorded among the 3372 identified click trains. Of the 168 echolocation encounters (bouts of click trains less than eight min apart), 150 (89.3%) involved single animals, indicating that solitary porpoises were frequently present and feeding in the port areas. Significant diel patterns were evident involving the biosonar behavior of the porpoises (including click trains and buzzes), fish density and boat traffic. The frequencies of the click trains and buzzes were significantly lower during the day than in the evening and at night, which suggests that porpoises in this region are primarily engaged in crepuscular and nocturnal foraging. The lack of a significant diel pattern in the echolocation encounters indicates the importance of the port in porpoise conservation. A forced feeding schedule may be associated with the lack of a significant correlation between porpoise acoustics and boat traffic. Overall, prey availability appears to be the primary factor that attracts porpoises. Additionally, porpoises tend to migrate or remain downstream in the morning and migrate or remain upstream in the evening, most likely to follow their prey. The findings of this study can be used to improve the conservation of the Yangtze finless porpoise.     

长江江豚对人工投食适应过程的观察

作者于1989,1992,2001 和2003 年,从长江铜陵江段共捕获24 头长江江豚,在长江干流水域中,用不同的围养方式做摄食行为的观察,累计88 d。结果表明,野外捕获的长江江豚对人工投喂有3 种适应行为:(1)拒食行为;(2)警戒行为;(3)摄食行为。长江江豚的平均拒食天数为2.4 d,其中成年江豚拒食达3 d,而未成年江豚仅拒食1.5 d,两者差异极为显著(P < 0.01)。在冬季和春季圈养试验中,长江江豚的日食量随时间呈上升趋势,冬春季差异显著(P <0.01)。第2 周后江豚警戒行为所用时间不足3 min,但持续时间较长。根据冬季观察,7 周后长江江豚在40 min 内所摄取的食量不足体重的7% ,推测其摄食行为仍处在适应调整阶段。     

长江江豚细菌性疾病的诊治

人工饲养或易地保护长江江豚(Neophocaena asiaeorientalis asiaeorientalis), 其水体中常含有病原菌且易引起江豚发病, 探讨长江江豚的细菌性疾病诊疗方法十分必要。文章利用细菌的分离培养与鉴定, 结合血液检测结果, 对安庆西江围网内一头患病江豚进行了病原确诊, 结果发现患病江豚的致病原为金黄色葡萄球菌(Staphylococcus aureus)和魔氏摩根菌(Morganella morganii)。依据致病菌的药敏试验结果, 综合患病江豚的整体状况制定了治疗方案并对其进行系统治疗, 结果预后良好。研究的成功开展为江豚、海豚等鲸类动物细菌性疾病的诊断与防治提供了良好借鉴。     

建立长江天鹅洲白鱀豚保护区的可行性研究

白豚（Ｌｉｐｏｔｅｓｖｅｘｉｌｌｉｆｅｒ）为我国特有珍稀动物,其种群数量仅２００头左右,十分濒危。为了拯救这一物种,针对白豚和长江的特点,作者选择了长江天鹅洲故道作为拟建的白豚半自然保护区,进行可行性研究。经过四年的工作,从水质理化状况、水生生物状况、鱼类资源、水体生产力以及故道周围环境等多角度,分析了天鹅洲故道的环境特征,摸清了该故道的本底,并将故道环境与长江环境进行了比较。在上述工作的基础上,又引５头江豚（Ｎｅｏｐｈｏ－ｃａｅｎａｐｈｏｃａｅｎｏｉｄｅｓ）入天鹅洲故道进行了二年的试养,并获成功。本底调查和试养江豚的结果表明,长江天鹅洲故道是建立白豚半自然保护区的理想场所。这个保护区的建立是保护白豚的一项有效、可行、必要的保护措施。     

长江湖口至荻港段江豚春季对生境选择的初步分析

研究表明鲸类的分布领域、集群规模、索食场所及迁移途径与栖息环境的地貌特征及生境因子密切相关（Watts and Gaskin,1986;Baumgartner,1997;Raum-Suryan et a1．,1998;Karczmarski et a1．,2000）。距离苏格兰较远的Moray Firth海域,生活的一群瓶鼻海豚（Tursiops truncatuz）,它们常聚集在岛屿附近的狭窄深槽入口处,那儿海床呈斜坡,