Is the standard Eurasian otter Lutra lutra survey strategy suitable for surveying the American mink Neovison vison?

The American mink Neovison vison is an elusive mustelid that is monitored mostly through the detection of its field signs, namely, footprints and scats. In Europe, the American mink has been often monitored using the standard otter survey strategy developed specifically for the Eurasian otter Lutra lutra, requiring to walk transects of 600 m spaced at least 5 km apart. We tested whether the standard otter survey strategy was appropriate for surveying mink. We studied a high-density population of mink along a 9-km stretch of river between December 2004 and April 2005. Monthly surveys were conducted and scats and footprints were recorded within 100-m sections along the river. The results showed a monthly variation in signs recovery, with the months of December, January and February being the best ones for surveying. Transects of 600 m detected mink between 74 and 90 % of the times in all months, excluding March when detection was as low as 56 %. Taken all together, the results suggest that the standard otter survey strategy was adequate to detect mink, at least in this case where species density was high. The study also highlighted monthly differences in signs detection, suggesting that temporal variations should be taken into account when designing the sampling strategy and the length of the sampling units (transects). In the months immediately following the mating season (and possibly in lower-density mink populations), it may be advisable to increase the length of transects to increase detection of mink.     

Sex identification of Eurasian otter (<Emphasis Type="Italic">Lutra lutra</Emphasis>) non-invasive DNA samples using ZFX/ZFY sequences

We developed a new PCR/RFLP system targeted to amplify and cut a segment of the ZFX/ZFY gene in non-invasive otter (Lutra lutra) samples. This assay produced one sex-specific fragment in females (XX genotypes) and two fragments in males (XY genotypes), and is intrinsically more reliable than alternative systems (e.g., SRY genes) that are based on the amplification of a single Y-linked fragment. The new primer pair correctly identified the sex of 23 DNA extracted from sexed otter tissues. This procedure was used to sex unknown DNA extracted from otter scats. A multi-tube approach led to identify the sex of 72/91 (79%) samples, using a minimum of two PCR replicates. This procedure is currently used in non-invasive genetic monitoring of Italian otter populations.     

Eurasian otter (<Emphasis Type="Italic">Lutra lutra</Emphasis>) density estimate based on radio tracking and other data sources

Estimating animal population size is a critical task in both wildlife management and conservation biology. Precise and unbiased estimates are nonetheless mostly difficult to obtain, as estimates based on abundance over unit area are frequently inflated due to the “edge effect” bias. This may lead to the implementation of inappropriate management and conservation decisions. In an attempt to obtain an as accurate and conservative as possible picture of Eurasian otter (Lutra lutra) numbers, we combined radio tracking data from a subset of tracked individuals from an extensive project on otter ecology performed in Southern Portugal with information stemming from other data sources, including trapping, carcasses, direct observation of tagged and untagged individuals, relatedness estimates among genotyped individuals, and a minor contribution from non-invasive genetic sampling. In 158 km of water network, which covers a sampling area of 161 km² and corresponds to the minimum convex polygon constructed around the locations of five radio-tracked females, 21 animals were estimated to exist. They included the five radio-tracked, reproducing females and six adult males. Density estimates varied from one otter per 3.71–7.80 km of river length (one adult otter per 7.09–14.36 km) to one otter per 7.67–7.93 km² of range, depending on the method and scale of analysis. Possible biases and implications of methods used for estimating density of otters and other organisms living in linear habitats are highlighted, providing recommendations on the issue.     

Eurasian otter (<Emphasis Type="Italic">Lutra lutra</Emphasis>) diet and prey selection in Mediterranean streams invaded by centrarchid fishes

The diet of the Iberian otter (Lutra lutra) was determined by analysing 547 spraints collected at 28 sites within a wide area invaded by centrarchid fishes (pumpkinseed sunfish, Lepomis gibbosus and largemouth bass, Micropterus salmoides): the middle Guadiana basin (South-west Iberian Peninsula). Fish was the otters’ main prey, representing more than 60% of total individuals and more than 80% of total biomass. Otters preyed on most of the fish species captured in the field; however, the consumption of centrarchids was low compared to their abundance in the streams, and Jacobs’ index of preference showed a clear rejection of both species by the otter. Consumption of native fish genera (Squalius, Barbus and Chondrostoma) by otters increased in relation to their increase in the environment. In contrast, increasing numbers of L. gibbosus in the field was not reflected in otter consumption. The general decline of native freshwater fishes in Iberian rivers, the preferred prey of otters, together with the spread of exotic fish species (centrarchids and others) could put otter populations at risk.     

A Comparison of the diet and distribution of southern river otter (Lutra provocax) and mink (Mustela vison) in Southern Chile

In Chile, between latitudes 39S and 4330'S, southern river otter ( Lutra provocax ) and introduced mink ( Mustela vison ) scats were collected. Mink sign was recorded in 29% of the aquatic habitat where otter sign was found. Sixty-eight per cent of mink scats were collected at otter rest sites. A significant difference between the diets and low percentage of habitat use overlap of the two species (5-22%) suggest that, in Chile, river otter and mink coexist with little competition for space or food. There are no data supporting a relationship between the introduction of mink and the decline of southern river otters.     

River otter population size estimation using noninvasive latrine surveys

Across much of North America, river otter (Lontra canadensis) populations were extirpated or greatly reduced by the early 20th century. More recently, reintroductions have resulted in restored populations and the recommencement of managed trapping. Perhaps the best example of these river otter reintroductions occurred in Missouri, regarded as one of the most successful carnivore recovery programs in history. However, abundance estimates for river otter populations are difficult to obtain and often contentious when used to underpin management activities. We assessed the value of latrine site monitoring as a mechanism for quantifying river otter abundance. Analyses of fecal DNA to identify individual animals may result in an improved population estimate and have been used for a variety of mammal species. We optimized laboratory protocols, redesigned existing microsatellite primers, and calculated genotyping error rates to enhance genotyping success for a large quantity of river otter scat samples. We also developed a method for molecular sexing. We then extracted DNA from 1,421 scat samples and anal sac secretions (anal jelly) collected during latrine site counts along 22–34-km stretches representing 8–77% of 8 rivers in southern Missouri in 2009. Error rates were low for the redesigned microsatellites. We obtained genotypes at 7–10 microsatellite loci for 24% of samples, observing highest success for anal jelly samples (71%) and lowest for fresh samples (collected within 1 day of defecation). We identified 63 otters (41 M, 22 F) in the 8 rivers, ranging from 2 to 14 otters per river. Analyses using program CAPWIRE resulted in population estimates similar to the minimum genotyping estimate. Density estimates averaged 0.24 otters/km. We used linear regression to develop and contrast models predicting population size based on latrine site and scat count indices, which are easily collected in the field. Population size was best predicted by a combination of scats per latrine and latrines per kilometer. Our results provide methodological approaches to guide wildlife managers seeking to initiate similar river otter fecal genotyping studies, as well as to estimate and monitor river otter population sizes. © 2011 The Wildlife Society.     

Development of novel real‐time TaqMan® PCR assays for the species and sex identification of otter (Lutra lutra) and their application to noninvasive genetic monitoring

Developing strategies to maintain biodiversity requires baseline information on the current status of each individual species. The development of genetic techniques and their application to noninvasively collected samples have the potential to yield information on the structure of elusive animal populations and so are important tools in conservation management. Using DNA isolated from faecal samples can be challenging owing to low quantity and quality. This study, however, presents the development of novel real‐time polymerase chain reaction assays using fluorescently labelled TaqMan^® MGB probes enabling species and sex identification of Eurasian otter (Lutra lutra) spraints (faeces). These assays can also be used in determining an optimum microsatellite panel and can be employed as cost‐saving screening tools for downstream genetic testing including microsatellite genotyping and haplotype analysis. The techniques are shown to work efficiently with L. lutra DNA isolated from tissue, hair, spraint, blood and anal jelly samples.     

Isolation and characterization of tetramicrosatellite DNA markers in the Eurasian otter (Lutra lutra)

Eight new tetramicrosatellite loci for Eurasian otter (Lutra lutra) were designed. Polymorphism of these eight loci in 29 otter individuals was tested. The results indicated that the allele numbers of each of loci ranged from three to five and the observed heterozygosity from 0.483 to 0.828. These new loci can be useful for population genetic research on otters and help improve the resolution of individual identification using noninvasive method.     

Does size matter? Relating consumed prey sizes and diet composition of otters in South Iberian coastal streams

We analysed seasonal changes in the sizes of prey [grey mullets (Mugilidae), flatfish (Soleidae), eelAnguilla anguilla and crayfishProcambarus clarkii] consumed by ottersLutra lutra Linnaeus, 1758 in a Mediterranean-climate coastal area and relate them to the frequencies of occurrence of each prey species in otter diet. The sizes of over 1500 otter prey were estimated from measurements of key pieces found in 814 otter spraints, which were collected in lower stream stretches in a sandy coastal area. Clear relationships between mean prey size and frequency of occurrence were observed for the four prey types. These relationships were positive for grey mullets, flatfish and crayfish (ie they occurred more in otter diet when more large individuals were predated), but was negative in the case of eels. Results suggest that these patterns could be related to seasonal changes in habitat use. Previous works in the study area showed that otter concentrate its predation efforts in freshwater stream stretches during spring and summer, when more and larger crayfish are available. Freshwater stretches have neither grey mullets nor flatfish, while eels are larger and scarcer there than near streams’ mouths, where crayfish is absent.     

Factors affecting otter (<Emphasis Type="Italic">Lutra lutra</Emphasis>) abundance and breeding success in freshwater habitats of the northeastern Iberian Peninsula

Otters are elusive semi-aquatic mammals, occurring in low densities and difficult to count. A study was conducted in 15 stretches (10–12 km) of four tributaries of the Ebro River, with the aims to understand spatial and temporal changes in otter abundance and breeding success and the causes of such variations. Between 1990 and 2009, both otter parameters were assessed by means of visual spring–early summer censuses, carried out by sets of observers located every 500 m. A total of 134 censuses were carried out, involving 4,540 twilight watches (7,896.5 h) and 520 otter sightings were recorded. Also, 39 different habitat characteristics (including prey species) were established for each stretch. Otter abundance was assessed by means of three indexes related to the census effort and the length and surface units (in terms of otter habitat). Excluding the upper stretches, we found on average 0.07–0.26 adult and subadults per kilometre (1.45–6.26/km²). Important interannual fluctuations in otter abundance and breeding success were found in some Pyrenean stretches located downstream of a large reservoir. This was linked to the effect of autumn floods (in part due to the opening of dams) on the fish stocks (mainly Barbels). Similar habitat conditions resulted in similar abundances between stretches, and different habitat conditions generated different abundances in adjacent stretches of the same river. No significant differences were found for litter size between small cubs (1.60 ± 0.70 cubs per litter) and large cubs (1.39 ± 0.50) as a whole, but differences between stretches were found. On average we found between 0.009 and 0.130 large cubs per year per kilometre. Otters bred more successfully in stretches with higher otter densities. Otter abundance and breeding success correlated negatively with altitude as a consequence of the interaction of several habitat characteristics with altitude. The stepwise linear regression linked the number of adult otters per kilometre with the ecosystem production (chlorophyll a concentration), while the number of large cubs per kilometre per year was linked with the food (fish + crayfish) abundance. The findings bring about a consistent and congruent scenario of otter abundance and breeding success explained by the different steps along the food chain.     

A comparative analysis of the complete mitochondrial genome of the Eurasian otter <Emphasis Type="Italic">Lutra lutra</Emphasis> (Carnivora; Mustelidae)

Otter populations are declining throughout the world and most otter species are considered endangered. Molecular methods are suitable tools for population genetic research on endangered species. In the present study, we analyzed the complete mitochondrial genome (mitogenome) sequence of the Eurasian otter Lutra lutra. The mitochondrial DNA sequence of the Eurasian otter is 16,505 bp in length and consists of 13 protein-coding genes, 22 tRNAs, 2 rRNAs, and a control region (CR). The CR sequence of otters from Europe and Asia showed nearly identical numbers and nucleotide sequences of minisatellites. Phylogenetic analysis of Mustelidae mitogenomes, including individual genes, revealed that Lutrinae and Mustelinae form a clade, and that L. lutra and Enhydra lutris are sister taxa within the Lutrinae. Phylogenetic analyses revealed that of the 13 mitochondrial protein-coding genes, ND5 is the most reliable marker for analysis of phylogenetic relationships within the Mustelidae.     

What is the taxonomic status of East Asian otter species based on molecular evidence?: focus on the position of the Japanese otter holotype specimen from museum

The Japanese otter (Lutra nippon), once inhabited in most islands of Japan, is now considered as an extinct species. Although the Japanese otter is regarded as a distinct species from the Eurasian otter (L. lutra), its phylogeny and taxonomic status are based on limited information on morphological and genetic data, and thus further clarification is required. Here, we assessed the phylogenetic relationship among the genus Lutra and taxonomic status of L. nippon by using the complete sequences of cytochrome b gene of its holotype. The present phylogenic trees supported that the genus Lutra specimens largely formed monophyletic group, with L. sumatrana as a basal to other Lutra species. Within Lutra species, L. nippon was distantly related with L. lutra. The European otter population of L. l. lutra were clustered together with its subspecies, L. l. chinensis rather than the same subspecies, Korean otter population. The discrepancy between the genetic data and traditional taxonomy justifies the necessity of reexamination of the current subspecific classification system of Eurasian otters. Level of genetic divergence between the holotype of L. nippon and L. lutra was two to three-fold lower than those among the other sister species of the Lutrinae. Based on the level of divergence between the L. nippon and L. lutra, and insufficient evidence of morphological difference between them, it is suggested that designation of Japanese otter as a separate species from L. lutra will be reconsidered.     

Habitat correlates of the Eurasian otter Lutra lutra recolonizing Central Poland

The increase in Eurasian otter Lutra lutra populations in their natural range and recolonization processes are recently observed in several European countries. We address the process of otter recolonization and habitat utilization in Central Poland over 14 years. Field surveys in 1998 and 2007 documented increase in occurrence of the species. The frequency of positive sites denoted 15 % in 1993, 38 % in 1998, and 89 % in 2007. Otter occurrence at study sites was positively affected by river width while negatively affected by presence of buildings at the site and river regulation. During the most intensive colonization process in the 1990s, the habitat preferences of the otter did not change. However, the sites inhabited by otters after 1998 were characterized by lower river width and tree cover and were more often located on regulated river sections, suggesting change in habitat tolerance during expansion. The otter abundance in transformed habitats is a result of increasing population numbers and the necessity to inhabit suboptimal sections of watercourses. Thus, it seems that presence–absence data for otter populations cannot be considered a reliable indicator of habitat quality, being depended of the population density.     

Antimicrobial-resistant Salmonella isolated from Eurasian otters (Lutra lutra Linnaeus, 1758) in Portugal

Eurasian otters (Lutra lutra Linnaeus, 1758) are present in a wide range of aquatic environments. Salmonella isolates have been obtained from otters at rehabilitation centers and in the wild and are sometimes associated with serious illnesses. Antimicrobial-resistant Salmonella were isolated from otter fecal samples collected in March 2006, September 2007, and March 2008 in two river basins in southern Portugal. From 67 samples tested, five were positive for Salmonella (7.58%). None of the isolates were susceptible to all antimicrobials tested, and all were resistant to multiple antimicrobials. Our results confirm the role of otters as potential carriers of Salmonella and the importance of environmental exposure to antimicrobial agents in selection for resistance in bacteria.     

完达山东部欧亚水獭种群数量及出现频次影响因素

水獭作为淡水生态系统健康的指示种和旗舰物种,在维持水生生态系统平衡与稳定中发挥着重要作用。然而目前对于完达山东部地区水獭种群数量、分布及其生境选择的影响因素的研究较为匮乏,严重影响了对该物种的野外保护与管理工作。于2021年12月至2022年4月冬季河流封冻期,采用沿河随机样线调查和红外相机监测相结合的方法对完达山东部地区8条主河和23条支流内的欧亚水獭(Lutra lutra)种群数量、分布现状进行了调查,并利用广义可加模型探究水獭出现频次与环境因子的关系。研究结果表明:(1)欧亚水獭在完达山东部水獭种群数量为571-661只,水獭种群密度为沿河(0.5559±0.2898)只/km,呈现中间高,四周低的趋势;(2)环境因子对水獭出现频次影响分析表明,河流深度、距农田距离、距居民区距离和距道路距离是影响水獭出现频次的关键因素。水獭出现频次与河流深度(0-40 cm)呈线性正相关,当河流深度达到40-50 cm时,水獭出现频次最高,之后随着河流深度的增加,出现频次降低;水獭出现频次与距农田距离(0-1.5 km)呈非线性正相关,在距农田距离为1.5-2 km范围内,水獭出现频次最高,之后降低;水獭出现频次与距居民区距离呈线性正相关;水獭出现频次与距道路距离呈非线性关系,当距离>7 km时,二者之间呈现为正相关,反之呈现为负相关。因此,水獭选择栖息地偏向于河流深(40-50 cm),远离农田(1.5-2 km)、居民区和道路(>7 km)的水域。研究为完达山东部欧亚水獭物种保护提供了基础数据和理论依据,建议通过河岸土地覆盖类型的管理、在河岸周围建立森林缓冲区及加强水獭保护宣传力度等措施实现对水獭物种及其栖息地的维持和保护。     

Characterizing habitat preference of Eurasian river otter (Lutra lutra) in streams using a self-organizing map

We studied the habitat preferences of Eurasian river otters (Lutra lutra) using the distribution patterns of the numbers of spraints and sprainting spots of otters, as well as related environmental variables (habitat zone, river management, bank type, vegetation coverage, width, depth, etc.) in two streams. The numbers of otter spraints and sprainting spots were sampled monthly in two streams on Geoje Island, Republic of Korea, from January to December 2004. Additional environmental variables were measured at the sampling sites. A self-organizing map (SOM), which is an unsupervised artificial neural network, was used to characterize the habitat preferences of otters. In our results, the SOM classified three different groups of study sites based on their habitat conditions, and the habitat differences were effectively visualized on the trained SOM map. Otters showed spatial and temporal dynamics in the numbers of spraints and sprainting spots, and revealed habitat preferences for shallow, narrow areas of streams and edges of water that were not far from reservoirs but covered with trees and shrubs. Additionally, otters preferred an environment in which weirs reduced the drift of water and gathered fishes and had a natural type of stream bank; these findings are relevant for river management. Otters adapted to places close to roads, residential areas, and agricultural areas with some tolerance of human interference.     

Procedures to genotype problematic non-invasive otter (Lutra lutra) samples

Non-invasive genetics is a powerful tool in wildlife research and monitoring, especially when dealing with elusive and rare species such as the Eurasian otter (Lutra lutra). Nevertheless, otter DNA obtained from scats and anal secretions appears to be exposed to very quick degradation processes, and the success rate in DNA amplification is lower than in other carnivores. We collected 191 samples from April to September 2011 along the river Sangro basin (Italy) which was recently re-colonized by the Eurasian otter. Using two sets of microsatellite loci (six Lut and seven OT loci), we investigated the influence of sample type and age, collection time, storage time, temperature and humidity on genotyping success and amplification success. We also tested the efficacy of different DNA extraction kits and storage buffer mediums. Finally, we compared amplification success rate, allelic dropout and false allele rates for each locus. We obtained a mean amplification success rate of 79.0 % and a genotyping success rate of 35.1 %. Fresh pure jellies yielded the highest amplification success and genotyping rate. Six microsatellite loci should be theoretically sufficient to distinguish the individual unrelated otters (PID?=?0.001), while 13 loci were needed to distinguish sibling otters (PID_sibs?=?0.002) in our population. We identified 11 otters, and molecular sexing ascertained the presence of five males, four females and two uncertain individuals. Generalized linear models highlighted a significant influence of sample type and age, temperature and humidity both on genotyping and amplification success.     

Trophic flexibility of the otter (Lutra lutra) in southern Italy

Diet composition of otters (Lutra lutra) was investigated in 2001 by spraints analysis (N=1323) on five rivers of southern Italy, with the aim of assessing the influence of fish availability, elevation and discharge on the consumption of food resources alternative to fish. Data were expressed as per cent frequency of occurrence (%FO) and per cent volume (%V). The study confirmed the great feeding adaptability of the otter that, in rivers partially interconnected and flowing on a small area, showed a strong fish eating habit in some rivers (Sinni and Mercure-Lao) and a diet mainly constituted by alternative resources in other ones (amphibians in the rivers Cogliandrino and Frido, crustaceans in the River Battendiero). Fish consumption for the five rivers was significantly correlated with fish biomass and with mean summer discharge, while it was inversely correlated with the mean altitude of the five rivers. The lack of a clear seasonality in the consumption of food sources alternative to fish together with the correlation between fish use and fish biomass for each river indicated fish availability as the main factor affecting otter relying to non-fish preys. Otter diet seemed influenced by the characteristics of river habitats (altitude, discharge and consequently fish biomass) more than by summer drought, typical of Mediterranean regions. The %FO and the %V allowed to drawn a similar picture of otter diet. Nonetheless the %V was useful for better illustrating diet variation among the different rivers and we argue that it could be useful in habitats where the otter feeds on preys with different proportions of indigestible remains.     

Stream community richness predicts apex predator occupancy dynamics in riparian systems

Streams and adjacent riparian habitats represent linked terrestrial and aquatic ecosystems that exchange materials and energy. Recognized relationships among apex predators and ecosystem biodiversity led us to hypothesize that these predators in riparian‐stream systems were more likely to be found in sites with high stream quality, defined as increased ecosystem function and integrity. In our freshwater study system, river otter Lontra canadensis and mink Neovison vison play critical roles as apex predators. We used multi‐season occupancy modelling across three sampling years (2012–2014) to compare aspects of the stream communities that explain occupancy dynamics of river otter and mink, including their interactions with other semi‐aquatic mammals. We surveyed for semi‐aquatic mammals at 77 sites in 12 major watersheds in southern Illinois, USA (44 526 km²). Naïve occupancy differed among years but generally increased for river otter, and remained high (≥93.5%) for mink. Increasing substrate availability increased detectability of river otter, whereas mink detection varied by survey period. Occupancy of river otter during the initial survey period was higher in sites closer to reintroduction points. Probability of colonization of river otter was positively associated with macroinvertebrate index of biotic integrity, fish species richness, and beaver presence. Sites with high species richness of fish families preferred by river otter also had increased river otter persistence. Mink occupied sites with increased fish richness, muskrat presence and mussel community index. Taken together, our results show occupancy of both mink and river otter were predicted by aspects of prey diversity and presence, indicating the importance of community composition in occupancy dynamics of riparian predators. Ultimately, these relationships suggest that habitat heterogeneity and system stability are important to apex predator site use. However, the relative role of bottom–up and top–down forcing in stream systems remains to be resolved.