Effect of nicking on Shiga-like toxin I of enterohaemorrhagic Escherichia coli

Abstract The Shiga-like toxin I (SLT-I), which had an unnicked A subunit, was purified from Escherichia coli O157: H7. After incubation of the unnicked SLT-I with trypsin, the A subunit of the toxin was nicked and converted to A₁ and A₂ peptides, which were linked by the disulfide bond. The effects of nicking of SLT-I on its heat stability and cytotoxic activity against Vero cells were examined. The trypsin treatment of SLT-I neither reduced nor increased the ability of cytotoxic activity or the heat stability of the toxin. The time course of binding of the toxin to Vero cells also was not affected by nicking of the toxin. These results indicate the absence of a difference in biological or physical properties of SLTs between nicked and unnicked conditions.     

The capsular (K51) antigen of Escherichia coli 01:K51:H−, an O-acetylated poly-N-acetylglucosamine phosphate

Abstract The capsular K51 antigen of E.coli was isolated from a liquid culture of E.coli 01:K51:H⁻ by Cetavlon precipitation. After purification it was obtained in a yield of about 80 mg/l. The polymer consisted of equimolar amounts of N -acetylglucosamine and phosphate and contained about 1.6 O -acetyl groups per N -acetylglucosamine residue. After de- O -acetylation it was resistant to periodate oxidation. Mild acid hydrolysis yielded N -acetylglucosamine-3-phosphate. With the aid of ¹³C- and ³¹P-NMR spectroscopy it was ascertained that the K51 antigen is a poly- α -1.3- N -acetylglucosamine phosphate, in which most of the hydroxyl groups at C4 and C6 of the N -acetylglucosamine residue are acetylated.     

Relationship between photosystem II activity and CO2 fixation in leaves

There is now potential to estimate photosystem II (PSII) activity in vivo from chlorophyll fluorescence measurements and thus gauge PSII activity per CO₂ fixed. A measure of the quantum yield of photosystem II, Φ_II (electron/photon absorbed by PSII), can be obtained in leaves under steady-state conditions in the light using a modulated fluorescence system. The rate of electron transport from PSII equals Φ_II times incident light intensity times the fraction of incident light absorbed by PSII. In C₄ plants, there is a linear relationship between PSII activity and CO₂ fixation, since there are no other major sinks for electrons; thus measurements of quantum yield of PSII may be used to estimate rates of photosynthesis in C₄ species. In C₃ plants, both CO₂ fixation and photorespiration are major sinks for electrons from PSII (a minimum of 4 electrons are required per CO₂, or per O₂ reacting with RuBP). The rates of PSII activity associated with photosynthesis in C₃ plants, based on estimates of the rates of carboxylation (v_o) and oxygenation (v_o) at various levels of CO₂ and O₂, largely account for the PSII activity determined from fluorescence measurements. Thus, in C₃ plants, the partitioning of electron flow between photosynthesis and photorespiration can be evaluated from analysis of fluorescence and CO₂ fixation.     

EXPRESSION OF A BEE-VENOM PHOSPHOLIPASE A2 FROM APIS CERANA CERANA IN ESCHERICHIA COLI

Abstract  The venomous phospholipase A₂ (AcPLA₂) coding reading region of the Chinese honeybee ( Apis cerana cerana ), which is composed of 405 bp encoding a mature glycosylated peptide with 134 amino residues was transformed into the expression vector pETblue-1. Then the recombinant vector was introduced into Escherichia coli Tuner (DE3) plac I for expression. Analysis result of SDS-PAGE showed that the expression products had a protein band of about 15kD. Detection of western blot using ant-European honeybee ( Apis mellifera ) phospholipase A₂ (AmPLA₂) polyclonal serum as the first antibody showed that the expression products appeared a special blot same as the native AmPLA₂.The result demonstrated that the AcPLA₂ peptide had been expressed in E. coli and the AcPLA₂ has the similar antigenicity as the AmPLA₂.     

Chemostat adaptation of Escherichia coli B/r/1 to low water activity

Chemostat cultures of Escherichia coli B/r/1 under conditions of glucose limitation in a salts medium at high water activity ( a _w of 0.999) and at an a _w of 0.987, controlled by NaCl, have been compared. The system was run at dilution rates above 0.035 h^-1. The results suggested that the organism adapted to the lower a _w of the medium as no significant change was observed in the energy requirement for maintenance, although the maximum molar growth yield for glucose decreased by 23.2%. Such cultures showed also a shorter lag and a higher growth rate in batch at an a _w of 0.987, as compared with cultures initiated with an unadapted ( a _w of 0.999) inoculum.     

A strict anaerobic extreme thermophilic hydrogen-producing culture enriched from digested household waste

Aims:  The aim of this study was to enrich, characterize and identify strict anaerobic extreme thermophilic hydrogen (H₂) producers from digested household solid wastes.
Methods and Results:  A strict anaerobic extreme thermophilic H₂ producing bacterial culture was enriched from a lab-scale digester treating household wastes at 70°C. The enriched mixed culture consisted of two rod-shaped bacterial members growing at an optimal temperature of 80°C and an optimal pH 8·1. The culture was able to utilize glucose, galactose, mannose, xylose, arabinose, maltose, sucrose, pyruvate and glycerol as carbon sources. Growth on glucose produced acetate, H₂ and carbon dioxide. Maximal H₂ production rate on glucose was 1·1 mmol l⁻¹ h⁻¹ with a maximum H₂ yield of 1·9 mole H₂ per mole glucose. 16S ribosomal DNA clone library analyses showed that the culture members were phylogenetically affiliated to the genera Bacillus and Clostridium. Relative abundance of the culture members, assessed by fluorescence in situ hybridization, were 87 ± 5% and 13 ± 5% for Bacillus and Clostridium , respectively.
Conclusions:  An extreme thermophilic, strict anaerobic, mixed microbial culture with H₂-producing potential was enriched from digested household wastes.
Significance and Impact of the Study:  This study provided a culture with a potential to be applied in reactor systems for extreme thermophilic H₂ production from complex organic wastes.     

Sensitivity of a dynamic global vegetation model to climate and atmospheric CO2

The equilibrium carbon storage capacity of the terrestrial biosphere has been investigated by running the Lund–Potsdam–Jena Dynamic Global Vegetation Model to equilibrium for a range of CO₂ concentrations and idealized climate states. Local climate is defined by the combination of an observation-based climatology and perturbation patterns derived from a 4 × CO₂ warming simulations, which are linearly scaled to global mean temperature deviations, Δ T _glob. Global carbon storage remains close to its optimum for Δ T _glob in the range of ±3°C in simulations with constant atmospheric CO₂. The magnitude of the carbon loss to the atmosphere per unit change in global average surface temperature shows a pronounced nonlinear threshold behavior. About twice as much carbon is lost per degree warming for Δ T _glob above 3°C than for present climate. Tropical, temperate, and boreal trees spread poleward with global warming. Vegetation dynamics govern the distribution of soil carbon storage and turnover in the climate space. For cold climate conditions, the global average decomposition rate of litter and soil decreases with warming, despite local increases in turnover rates. This result is not compatible with the assumption, commonly made in global box models, that soil turnover increases exponentially with global average surface temperature, over a wide temperature range.     

Isolation and characterization of alginate-degrading bacteria for disposal of seaweed wastes

Aims:  Isolation of novel alginate degrading bacteria for the disposal of seaweed waste in composting process.
Methods and Results:  Decomposition of alginate polymers was checked by the 3,5-dinitrosalicylic acid (DNS) method for reducing sugar, and absorbance at 235 nm for unsaturated sugar. A bacterium A7 was isolated from wakame compost and confirmed to belong to the genus Gracilibacillus by partial 16S rDNA analysis. The optimum condition for the growth of A7 in a medium containing 5 g l⁻¹ of sodium alginate is as follows: pH, 8·5–9·5; NaCl, 0·5 mol l⁻¹; temperature, 30°C and polypeptone as nutrient content, 2–5 g l⁻¹. In a laboratory-scale composting experiment, the alginate content in wakame compost decreased to 14·3% after 72 h of composting from an initial value of 36%, indicating the effectiveness of alginate decomposition of A7 in wakame composting.
Conclusions:  The bacterium A7 was found to be alginate lyase-producing in genus Gracilibacillus and effective in degrading alginate to oligosaccharides in wakame during composting process.
Significance and Impact of the Study:  Development of new methods for the disposal of marine wastes and production of functional products.     

Most probable number methodology for quantifying dilute concentrations and fluxes of Escherichia coli O157:H7 in surface waters

Aims:  To better understand the transport and enumeration of dilute densities of Escherichia coli O157:H7 in agricultural watersheds, we developed a culture-based, five tube-multiple dilution most probable number (MPN) method.
Methods and Results:  The MPN method combined a filtration technique for large volumes of surface water with standard selective media, biochemical and immunological tests, and a TaqMan confirmation step. This method determined E. coli O157:H7 concentrations as low as 0·1 MPN per litre, with a 95% confidence level of 0·01–0·7 MPN per litre. Escherichia coli O157:H7 densities ranged from not detectable to 9 MPN per litre for pond inflow, from not detectable to 0·9 MPN per litre for pond outflow and from not detectable to 8·3 MPN per litre for within pond. The MPN methodology was extended to mass flux determinations. Fluxes of E. coli O157:H7 ranged from <27 to >10⁴ MPN per hour.
Conclusion:  This culture-based method can detect small numbers of viable/culturable E. coli O157:H7 in surface waters of watersheds containing animal agriculture and wildlife.
Significance and Impact of the Study:  This MPN method will improve our understanding of the transport and fate of E. coli O157:H7 in agricultural watersheds, and can be the basis of collections of environmental E. coli O157:H7.     

Comparative assessment of inorganic pyrophosphate and pyrophosphatase levels of Escherichia coli, Clostridium pasteurianum, and Clostridium thermoaceticum

Abstract Pyrophosphatase (PP_iase) specific activities were much higher in anaerobic cultures of Escherichia coli (0.54 units) than in Clostridium pasteurianum (0.067 units) and Clostridium thermoaceticum (0.017 units) (1 unit = 1 μ mole PP_i hydrolyzed/min per mg cell dry wt.), and were fairly constant throughout the growth of all three organisms. Conversely, intracellular levels of pyrophosphate (PP_i) were very low and constant in E. coli throughout growth (0.3 mM), while those of C. pasteurianum and C. thermoaceticum were higher (1.44 and 0.8 mM, respectively) and peaked sharply during mid log-phase of growth. PP_iase and intracellular PP_i remained relatively constant in E. coli when grown aerobically or anaerobically, and when growth was in medium containing PP_i as the sole source of supplemental phosphorus.     

An effective method for isolating alginate lyase-producing Bacillus sp. ATB-1015 strain and purification and characterization of the lyase

A new alginate lyase-producing micro-organism, designated as Bacillus sp. strain ATB-1015, was effectively isolated from soil samples pretreated for 3 months with a substrate of the enzyme, sodium alginate. Alginate lyase activity was assayed by the degrading activity of biofilm on Teflon sheet discs, which was formed by a mucoid strain of Pseudomonas aeruginosa PAM3 selected from clinical isolates. The extracellular alginate lyase was precipitated with ammonium sulphate from the culture broth, and purified by gel filtration and anion exchange chromatography. The molecular weight of the lyase was estimated to be 41 kDa by SDS polyacrylamide gel electrophoresis and Sephacryl S-200 HR column chromatography. The optimum pH and temperature for the enzyme activity were around 7·5 and 37 °C, respectively, and the Km value was 0·17% with the substrate, sodium alginate. The lyase activity was completely inhibited by treatment with 1 mmol l⁻¹ of EDTA and the decreased activity was almost completely recovered by the addition of 2 mmol l⁻¹ of CaCl₂. The activity was not affected by treatment with the protein denaturants, 0·01 mol l⁻¹ of SDS or 1 mmol l⁻¹ of urea. The lyase had substrate specificity for both the poly-guluronate and poly-mannuronate units in the alginate molecule.     

GANGLIOSIDES OF HUMAN MYELIN: SIALOSYLGALACTOSYLCERAMIDE (G7) AS A MAJOR COMPONENT

Abstract— Gangliosides were isolated from purified human myelin in a yield of 62 μg of lipid-bound sialic acid per 100 mg of dry myelin. Sialosylgalactosyl ceramide (G₇) was found to be a major component of the ganglioside fraction, amounting to 15 per cent of the total sialic acid. It accounted for 10 per cent of lipid-bound sialic acid in adult human white matter, making it the third most abundant ganglioside on a molar basis. These results were obtained with an improved method for isolating total gangliosides in high yield, by employing DEAE-Sephadex column chromatography. Myelin from other mammalian species had considerably less G₇, and there were also indications of maturational changes. Both 2-hydroxy and unsubstituted fatty acids were components of the ceramide unit, in a ratio of 3:2, respectively. The overall fatty acid pattern was very similar to that for myelin cerebroside and sulphatide. Long-chain bases included only C₁₈ species, with sphingosine predominating (>90 per cent). These observations suggest a metabolic relationship between G₇ and either cerebroside or sulphatide.     

Chloroplast ultrastructure in two Crassulacean species and an F1 hybrid with differing biomass δ13C values

Abstract. The chloroplasts of two species of the Crassulaceae and their F₁ hybrid were compared by electron microscopy. The two species had contrasting leaf tissue δ¹³C values of −25°/_∞ ( Sedum greggii ) and −13°/_∞ ( Cremnophila linguifolia ), and the F₁ hybrid had a value of − 18°/_∞. S. greggii had a mean of 8.9 thylakoids per granum in contrast to C. linguifolia which had a mean of only 3.8 thylakoids per granum. The F₁ hybrid had a mean of 6.4 thylakoids per granum. Crystaloids were observed in S. greggii and the hybrid but not in C. linguifolia     

A rapid, whole-tissue determination of the functional fraction of PSII after photoinhibition of leaves based on flash-induced P700 redox kinetics

Assaying the number of functional PSII complexes by the oxygen yield from leaf tissue per saturating, single-turnover flash, assuming that each functional PSII evolves one oxygen molecule after four flashes, is one of the most direct methods but time-consuming. The ratio of variable to maximum Chl fluorescence yield (F_v/F_m) in leaves can be correlated with the oxygen yield per flash during a progressive loss of PSII activity associated with high-light stress and is rapid and non-intrusive, but suffers from being representative of chloroplasts near the measured leaf surface; consequently, the exact correlation depends on the internal leaf structure and on which leaf surface is being measured. Our results show that the average F_v/F_m of the adaxial and abaxial surfaces has a reasonable linear correlation with the oxygen yield per flash after varied extents of photoinactivation of PSII. However, we obtained an even better linear correlation between (1) the integrated, transient electron flow (Σ) to P700⁺, the dimeric Chl cation in PSI, after superimposing a single-turnover flash on steady background far-red light and (2) the relative oxygen yield per flash. Leaves of C3 and C4 plants, woody and herbaceous species, wild-type and a Chl- b -less mutant, and monocot and dicot plants gave a single straight line, which seems to be a universal relation for predicting the relative oxygen yield per flash from Σ. Measurement of Σ is non-intrusive, representative of the whole leaf tissue, rapid and applicable to attached leaves; it may even be applicable in the field.     

Strain and temperature-dependent variation in the amount of BtuB polypeptide in the Escherichia coli K-12 outer membrane

Abstract The outer membrane protein BtuB of Escherichia coli K-12 is the receptor for vitamin B₁₂; it is normally present in approx. 200 copies per cell. We describe here the conditions by which BtuB was readily observed in electropherograms of outer membrane preparations. These conditions are as follows. (1) Incorporation of 8 M urea in sodium dodecyl sulfate-polyacrylamide gel systems improved detection of the polypeptide. (2) In most E. coli K-12 strains examined, BtuB was most abundant when cells were grown at 27°C. This thermoregulation of BtuB was independent of envZ and envY , two regulatory genes for outer membrane proteins.     

Escherichia coli O157 can grow in natural freshwater at low carbon concentrations

Whereas much information on the die-off of Escherichia coli in the aquatic environment is available, only few data support its growth under such conditions. We therefore investigated batch growth in microcosms containing different types of sterile freshwater. The water samples were inoculated with low starting cell concentrations of E. coli O157 (3 × 10³ cells ml⁻¹) and growth was followed using nucleic acid staining combined with flow cytometry. We demonstrated that E. coli O157 is able to grow in sterile freshwater at low carbon concentrations, which is against the common view that cell numbers decline over time when added to freshwater samples. A correlation between apparent assimilable organic carbon (AOC_app) concentration and the final cell concentration reached by E. coli O157 was established ( P  <  0.01). A considerable fraction of the AOC_app (34 ± 13%) was used by E. coli O157 but the numerical cell yield was about five-times lower in comparison with the bacterial AOC-test community, which originated from natural freshwater. On average, the maximum specific growth rate ( μ _max) of E. coli O157 growing in sterile freshwater at 30°C was 0.19 ± 0.07 h⁻¹. Batch growth assays at five different temperatures revealed a positive influence of temperature on μ _max of E. coli O157. The results give new information on the behaviour of this common pathogen in the aquatic environment and contribute to microbial risk assessment in order to prevent spreading of water-borne diseases.     

Canopy photosynthesis of crops and native plant communities exposed to long-term elevated CO2

Abstract. There have been seven studies of canopy photosynthesis of plants grown in elevated atmospheric CO₂: three of seed crops, two of forage crops and two of native plant ecosystems. Growth in elevated CO₂ increased canopy photosynthesis in all cases. The relative effect of CO₂ was correlated with increasing temperature: the least stimulation occurred in tundra vegetation grown at an average temperature near 10°C and the greatest in rice grown at 43°C. In soybean, effects of CO₂ were greater during leaf expansion and pod fill than at other stages of crop maturation. In the longest running experiment with elevated CO₂ treatment to date, monospecific stands of a C₃ sedge, Scirpus olneyi (Grey), and a C₄ grass, Spartina patens (Ait.) Muhl., have been exposed to twice normal ambient CO₂ concentrations for four growing seasons, in open top chambers on a Chesapeake Bay salt marsh. Net ecosystem CO₂ exchange per unit green biomass (NCE_b) increased by an average of 48% throughout the growing season of 1988, the second year of treatment. Elevated CO₂ increased net ecosystem carbon assimilation by 88% in the Scirpus olneyi community and 40% in the Spartina patens community.     

Purification and characterization of a Na/K dependent alginate lyase from turban shell gut Vibrio sp. YKW-34

An alginate lyase with high specific enzyme activity was purified from Vibrio sp. YKW-34, which was newly isolated from turban shell gut. The alginate lyase was purified by in order of ion exchange, hydrophobic and gel filtration chromatographies to homogeneity with a recovery of 7% and a fold of 25. This alginate lyase was composed of a single polypeptide chain with molecular mass of 60 kDa and isoelectric point of 5.5–5.7. The optimal pH and temperature for alginate lyase activity were pH 7.0 and 40 °C, respectively. The alginate lyase was stable over pH 7.0–10.0 and at temperature below 50 °C. The alginate lyase had substrate specificity for both poly-guluronate and poly-mannuronate units. The k_cat/K_m value for alginate (heterotype) was 1.7 × 10⁶ s⁻¹ M⁻¹. The enzyme activity was completely lost by dialysis and restored by addition of Na⁺ or K⁺. The optimal activity exhibited in 0.1 M of Na⁺ or K⁺. This enzyme was resistant to denaturing reagents (SDS and urea), reducing reagents (β-mercaptoethanol and DTT) and chelating reagents (EGTA and EDTA).     

褐藻胶裂解酶基因的克隆表达与酶学性质

随着大型褐藻生产燃料乙醇以及褐藻寡糖重大药用价值的发现,褐藻胶裂解酶成为国内外多个领域的研究重点。文中对解藻酸弧菌上与褐藻胶降解相关的5个基因分别进行克隆表达,通过SDS-PAGE和酶活性定量测定,发现该基因簇中的4个基因有降解褐藻胶活性。对酶活最高的rAlgV3进行了诱导条件的优化、酶蛋白纯化及酶性质研究,发现优化诱导条件后重组酶rAlgV3的酶活由2.34×10~4 U/L上升为1.68×10~5 U/L,比优化前提高了7.3倍;对酶性质进行表征发现该酶在4–70℃均有活性,最适反应温度为40℃,在4–20℃酶相对稳定;该酶在pH 6.5-9.0环境下均有较高的酶活,最适pH为8.0;pH稳定性好,在pH 4.5–9.5环境下可以稳定存在;适量的NaCl浓度和Fe~(2+)、Fe~(3+)等离子具有促进酶活的作用,SDS和Cu~(2+)离子可明显抑制酶活力。对该酶的底物特性的研究发现,该酶不仅可以降解褐藻胶中的Poly-M片段,也能降解Poly-G片段,具有广泛底物特性;其降解海藻酸钠主要释放二糖和三糖,是一种内切酶。该酶对于第三代燃料乙醇的发展及褐藻寡糖的生产具有重要作用。     

Mineral sulphide oxidation by enrichment cultures of novel thermoacidophilic bacteria

Abstract: Enrichment culture of hot spring water samples with pyrite as substrate has provided acidophiles with novel growth characteristics: with these bacteria, the range of conditions under which rapid microbial oxidation of mineral sulphides has been demonstrated has been extended. The upper temperature limit for bacterial mineral oxidation in reactors has been raised. The dissolution of pyrite occurred during growth of Sulfolobus -like thermophiles up to almost 90C. The most efficient extraction of copper from chalcopyrite occurred at 80–85C. With moderate thermophiles, rapid oxidation of minerals was obtained during autotrophic growth in the absence of supplemental CO₂: a mixed enrichment culture was active in pyrite dissolution at 45–50C in reactors gassed only with air which contrasted with poor growth by well-studied moderate thermophiles in the absence of enhanced CO₂ concentrations.