Fluorescence intensity studies of Triassic acritarchs from the Yanchang Formation in Ordos basin, northwestern China

Fluorescence properties of Early Cambrian acritarchs were investigated using Leica das Mikroskop (DM) microscopy with a mercury lamp. Well-preserved autoflurescence properties show a correlation between acritarchs morphology and the intensity of emitted fluorescence. In accordance with the fluorescence intensity of organic cell walls, two groups of microfossils were distinguished. Results of observation in this study, which are consistent with those of the previous foreign studies, are in good agreement with regular difference in autofluorescence intensity among palynomorphs reported by McPhilemy (1998). Spores and algae, including Botryococcus, have very bright fluorescence while acritarchs often show less intense fluorescence. Dark brown microfossils have been reworked, and have little or no fluorescence. __________ Translated from Acta Micropalaeontologica Sinica, 2006, 23(3): 309–312 [译自: 微体古生物学报]     

鄂尔多斯盆地三叠系延长组疑源类的荧光特征

在鄂尔多斯盆地三叠纪湖相沉积的延长组中,发现保存很好的藻类化石,荧光显微镜下显示很好的荧光;我们发现同层位产出的不同藻类化石具有不同的荧光强度,对这些藻类荧光强度的观察,符合以往国外学者提出的化石荧光与化石类别相关的结论。这也是我国首次用化石藻类荧光与生物属性关系进行研究的尝试,为今后利用荧光进行化石藻类分选和超微结构研究作了有益的探索。     

Population dynamics of galeate acritarchs at the Cambrian–Ordovician transition in the Algerian Sahara

Galeate acritarchs are a major component of Late Cambrian and Early Ordovician palynological assemblages. The populations of galeate acritarchs from the Cambrian–Ordovician transition section in borehole Nl-2 of the Algerian Sahara show a gradual increase in process length and in complexity of the process structures through the succession. While the number of striate elements at the process base, the number of distal ramifications, and the number of membranes between the processes increases progressively, the central body diameter shows only minor variation within the succession. The galeate acritarchs are here interpreted as probably being resting cysts of a microorganism similar to modern dinoflagellates. Published laboratory culture experiments on living dinoflagellates document a considerable morphological variation with respect to the process morphology of the resting cysts that can be produced by a single biologically defined species. Based on these experiments, it is possible to interpret the morphological changes in the galeate acritarchs as being possibly related to changing ecological conditions. By analogy to the cyst distribution of modern dinoflagellates, changing salinity may have played an important role. Depending on environmental parameters, and perhaps on the maturity attained before rupture of the outer membrane during cyst formation, the galeate acritarchs may show a wide variety of process morphologies that have to date been used to describe four genera (morphogenera) and 84 species (morphospecies).     

Diverse small spinose acritarchs from the Ediacaran Doushantuo Formation, South China

The Ediacaran Doushantuo Formation in South China is underlain by the Cryogenian Nantuo Formation (glacial rocks) and overlain by the late Ediacaran Dengying Formation. It is characterized by well-preserved, large (normally >100 μm in size) spinose acritarchs (LSAs), which have been shown to be probably the only useful biostratigraphic tool for the global correlation of the early- and middle-Ediacaran. Acritarchs are organic microfossils normally known as single-celled eukaryotic organisms (protists). Although recent research suggests that some large spinose acritarchs may represent diapause egg cysts of metazoans, the biological affinities of the Ediacaran spinose acritarchs, especially for those displaying remarkable size ranges, are still debatable.Recently, smaller specimens of the Ediacaran spinose acritarchs have been found in cherts and phosphorites of the Doushantuo Formation in South China. Many described Ediacaran spinose acritarch taxa display large size variation (from tens to hundreds of microns in vesicle diameter), but some taxa only have smaller (<70 μm) specimens. The morphological comparison with Paleozoic counterparts indicates that some Ediacaran spinose acritarchs may have phylogenetic affinity to eukaryotic algae. More evidence, including wall ultra-structure, geochemical analysis and comparison with modern analogs, is needed to understand the biological affinity of the Ediacaran spinose acritarchs. The remarkable radiation of planktonic protists, characterized by abundant, diverse spinose acritarchs, occurred as early as in the late Neoproterozoic, i.e., 40–60 million years earlier than previously thought.     

Thermally-induced structural and chemical alteration of organic-walled microfossils: an experimental approach to understanding fossil preservation in metasediments

The identification and confirmation of bona fide Archean–Paleoproterozoic microfossils can prove to be a challenging task, further compounded by diagenetic and metamorphic histories. While structures of likely biological origin are not uncommon in Precambrian rocks, the search for early fossil life has been disproportionately focused on lesser thermally altered rocks, typically greenschist or lower‐grade metamorphism. Recently, however, an increasing number of inferred micro‐ and macrofossils have been reported from higher‐grade metasediments, prompting us to experimentally test and quantify the preservability of organic‐walled microfossils over varying durations of controlled heating and under two differing redox conditions. Because of their relatively low‐intensity natural thermal alteration, acritarchs from the Mesoproterozoic Ruyang Group were chosen as subjects for experimental heating at approximately 500°C, with durations ranging from 1 to 250 days and in both oxic (normal present day conditions) and anoxic conditions. Upon extraction, the opacity, reflectivity, color, microchemistry, and microstructures of the heated acritarchs were characterized using optic microscopy, scanning electron microscopy, Raman spectroscopy, and X‐ray photoelectron spectroscopy. The results differ for acritarchs prepared under oxic vs. anoxic conditions, with the anoxic replicates surviving experimental heating longer and retaining biological morphologies better, despite an increasing degree of carbonization with continuous heating. Conversely, the oxic replicates show aggressive degradation. In conjunction with fossils from high‐grade metasediments, our data illustrate the preservational potential of organic‐walled microfossils subjected to metamorphism in reducing conditions, offer insights into the search for microfossils in metasediments, and help to elucidate the influence of time on the carbonization/graphitization processes during thermal alteration.     

鼻咽组织荧光寿命影响因素研究

本文在研究了离体人体鼻咽正常组织和癌变组织的荧光寿命的基础上,实验研究了生理盐水的浓度、组织光学特性参数、激发光源的偏振性对癌变和正常鼻咽组织的荧光寿命的影响。实验结果表明：组织的光学特性参数对组织的荧光寿命有不同程度的影响;而不同浓度的生理盐水和光源的偏振性对组织的荧光寿命没有显著的影响。荧光寿命与该发射荧光的强度没有关系,只决定于局部环境,受微环境的物理化学性质因素的影响,因此荧光寿命作为人体组织癌变的检测方法,有着很好的应用前景。     

(Semi-)quantitative analysis of reduced nicotinamide adenine dinucleotide fluorescence images of blood-perfused rat heart.

In vivo analysis of the metabolic state of tissue by means of reduced nicotinamide adenine dinucleotide (NADH) fluorimetry is disturbed by tissue movements and by hemodynamic and oximetric effects. These factors cause changes in the absorption of ultraviolet (UV) excitation light by the tissue. Many different methods have been used in the literature to compensate measured NADH fluorescence intensities for these effects. In this paper we show on theoretical grounds that the ratio of NADH fluorescence intensity and UV diffuse reflectance intensity provides a (semi-)quantitative measure of tissue NADH concentrations. This result is corroborated by experiments with tissue phantoms in which absorption and back-scattering properties were varied. Furthermore, we have verified the validity of this compensation method in isolated Langendorff-perfused rat heart preparations. In this preparation oximetric effects (of blood and tissue) are the major determinants of the metabolism-dependent UV diffuse reflectance change. Hemodynamic effects accompanying compensatory vasodilation are negligible. Movement artifacts were eliminated by simultaneously recording fluorescence and reflectance images, using a CCD camera with a biprism configuration. The results show that the NADH fluorescence/UV reflectance ratio can be used to monitor the mitochondrial redox state of the surface of intact blood-perfused myocardium.     

IgG-Eu-IDPA对抗原IOV的时间分辨荧光免疫检测

镧系螯合物已经被广泛应用于高灵敏度的时间分辨荧光免疫分析.但是,使用紫外光激发镧系螯合物会对生物分子和细胞产生很大的损害.合成了能够被可见光(最大波长565nm)激发的IgG-Eu-IDPA,并测量了IgG-Eu-IDPA的光谱属性,如荧光寿命、在不同pH值和不同浓度环境下的荧光强度.在自制的时间分辨荧光仪上使用IgG-Eu-IDPA作为荧光探针,检测IOV抗原.数据显示,它的灵敏度远远高于传统的荧光仪.结果表明,IgG-Eu-IDPA能够在高灵敏度的原位和活体分析中作为一种新的、有潜力的荧光探针.     

Fluorescence properties of free and protein bound fluorescein dyes. I. Macrospectrofluorometric measurements.

Excitation and emission properties of fluorescein derivatives were studied macrofluorometrically. Measurements were performed with solutions of various concentrations (0.07-100 microgram/ml) of free sodium fluorescein prepared from fluorescein diacetate (FDA), fluorescein isothiocyanate (FITC) and FITC bound to rabbit gamma-globulin. Both excitation and emission spectra as well as fluorescence intensities at constant excitation/emission wavelengths (496/515 nm) were recorded. The findings indicate that (1) FDA gives about twice the fluorescence intensity compared to equal concentrations of FITC. (2) The fluorescence properties of FITC upon excitation with blue light (lambda = 496 nm) are only slightly altered by the conjugation to rabbit gamma-globulin. (3) Considerable quenching due to conjugation could, however, be shown to occur upon UV excitation (lambda = 340 nm). (4) Fluorescence emission excited by visible blue light (496 nm) increases linearly to dye concentration in a range of 0.07-2.5 microgram/ml. Beginning at 5 microgram/ml (10-(5) M/1) all three compounds show a sharp decrease of fluorescence intensity with further increasing concentration. Practical aspects of these data for the immunofluorescence method are discussed.     

Multi-Color Single Particle Tracking with Quantum Dots

Quantum dots (QDs) have long promised to revolutionize fluorescence detection to include even applications requiring simultaneous multi-species detection at single molecule sensitivity. Despite the early promise, the unique optical properties of QDs have not yet been fully exploited in e. g. multiplex single molecule sensitivity applications such as single particle tracking (SPT). In order to fully optimize single molecule multiplex application with QDs, we have in this work performed a comprehensive quantitative investigation of the fluorescence intensities, fluorescence intensity fluctuations, and hydrodynamic radii of eight types of commercially available water soluble QDs. In this study, we show that the fluorescence intensity of CdSe core QDs increases as the emission of the QDs shifts towards the red but that hybrid CdSe/CdTe core QDs are less bright than the furthest red-shifted CdSe QDs. We further show that there is only a small size advantage in using blue-shifted QDs in biological applications because of the additional size of the water-stabilizing surface coat. Extending previous work, we finally also show that parallel four color multicolor (MC)-SPT with QDs is possible at an image acquisition rate of at least 25 Hz. We demonstrate the technique by measuring the lateral dynamics of a lipid, biotin-cap-DPPE, in the cellular plasma membrane of live cells using four different colors of QDs; QD565, QD605, QD655, and QD705 as labels.     

Photophysics of a neurotransmitter: ionization and spectroscopic properties of serotonin.

The neurotransmitter serotonin plays a modulatory role in the regulation of various cognitive and behavioral functions such as sleep, mood, pain, depression, anxiety, and learning by binding to a number of serotonin receptors present upon the cell surface. The spectroscopic properties of serotonin and their modulation with ionization state have been studied. Results show that serotonin fluorescence, as measured by its intensity, emission maximum, and lifetime, is pH dependent. These results are further supported by absorbance changes that show very similar pH dependence. Changes in fluorescence intensity and absorbance as a function of pH are consistent with a pK(a) of 10.4 +/- 0.2. The ligand-binding site for serotonin receptors is believed to be located in one of the transmembrane domains of the receptors. To develop a basis for monitoring the binding of serotonin to its receptors, its fluorescence in nonpolar media has been studied. No significant binding or partitioning of serotonin to membranes under physiological conditions was observed. Serotonin fluorescence in solvents of lower polarity is characterized by an enhancement in intensity and a blue shift in emission maximum, although the solvatochromism is much less pronounced than in tryptophan. In view of the multiple roles played by the serotonergic systems in the central and peripheral nervous systems, these results are relevant to future studies of serotonin and its binding to its receptors.     

Early post-mortem calcified Devonian acritarchs as a source of calcispheric structures

Uniquely preserved Late Devonian calcispheres were found in a core of the deep borehole Sosnowiec IG-1 (Upper Silesia, southern Poland). These enigmatic calcareous microfossils are interpreted here as acritarchs that underwent an early post-mortem calcification. Remnants of organic walls preserved in the calcispheres suggest that they represent various acanthomorphic acritarchs, characteristic members of the Palaeozoic marine phytoplankton. Taphonomic analysis combined with the light microscope and scanning electron microscope (SEM) observations of mineral and organic components of the investigated calcispheres suggest that a complex multi-stage process led to calcification of their in vivo non-mineralized acritarch forerunners. The ubiquity of acanthomorphic calcispheres in many Devonian shallow-water limestones is a testimony to little, thus far, documented acritarch crops that must have existed over extensive areas of carbonate-producing epicontinental seas. The scarcity of acritarchs described from Devonian shallow-water limestones may thus represent a taphonomic bias rather than real rarity or absence.     

山西永济白草坪组具刺疑源类的发现及其地质意义

该文着重报道了山西永济白草坪组(一般认为系中元古界上部相当于蓟县系的层位),以具刺疑源类为主的微化石群,计有4类6属15种,其中包括1新属,4新种,1新组合,1亲近种,2未定种,新属是具细网状纹饰的复杂具刺疑源类Shuiyousphaeridium Yan gen.nov.,4新种是Shuiyousphaeridium membraniferum Yan sp.nov.,Dictyosphaera incrassate Yan sp.nov.,Foliomorpha stipuliferaYan sp.nov.,Manicosiphoninema shuiyouense Yan sp.nov.。本微化石群以球形疑源类为主体,以具刺疑源类的大量发育为特征,并伴生有推测是绿藻和褐藻的化石,其组合面貌与蓟县上前寒武系各组皆有明显区别,具有更高的进化程度,从生物地层标志推测白草坪组所在的汝阳群应归入震旦系。白草坪组具刺疑源类可能是横裂甲藻的原始分子,它在地层对比和藻类进化方面皆具有重要意义。     

Microplankton associations, biofacies and palaeoenvironment of the type lower Ludlow Series, Silurian

The acritarchs and prasinophyte algae from the type lower Ludlow Series of the Goggin Road section, Ludlow, England, are resolved into seven recurrent associations comprising taxa with similar environmental preferences. Endemic and environmentally sensitive associations of acritarchs and prasinophytes are identified and high-resolution fluctuations in the early Ludlow palaeoenvironment are established. An early Ludlow crisis in the acritarchs is recognized in the lower part of the Middle Elton Formation, when an abrupt palaeoenvironmental change in the Ludlow area resulted in a large decline in the abundance of the acritarchs, but allowed Tasmanites and retiolitid graptolites to flourish briefly. Cymbosphaeridium sp. A, Pulvinosphaeridium ludlowense and Multiplicisphaeridium arbusculum forma A are taxa possibly specialized, or produced as a response, to a stressed palaeoenvironment, as they are most abundant when other acritarchs and prasinophytes are uncommon. The low abundance of acritarchs and prasinophytes in the Upper Elton Formation may be related to high sedimentation rates and to the slumping of sediments caused by instability on the shelf of the Welsh Basin, or to lower plankton productivity.     

Peptide sequence and conformation strongly influence tryptophan fluorescence

This article probes the denatured state ensemble of ribonuclease Sa (RNase Sa) using fluorescence. To interpret the results obtained with RNase Sa, it is essential that we gain a better understanding of the fluorescence properties of tryptophan (Trp) in peptides. We describe studies of N-acetyl-L-tryptophanamide (NATA), a tripeptide: AWA, and six pentapeptides: AAWAA, WVSGT, GYWHE, HEWTV, EAWQE, and DYWTG. The latter five peptides have the same sequence as those surrounding the Trp residues studied in RNase Sa. The fluorescence emission spectra, the fluorescence lifetimes, and the fluorescence quenching by acrylamide and iodide were measured in concentrated solutions of urea and guanidine hydrochloride. Excited-state electron transfer from the indole ring of Trp to the carbonyl groups of peptide bonds is thought to be the most important mechanism for intramolecular quenching of Trp fluorescence. We find the maximum fluorescence intensities vary from 49,000 for NATA with two carbonyls, to 24,400 for AWA with four carbonyls, to 28,500 for AAWAA with six carbonyls. This suggests that the four carbonyls of AWA are better able to quench Trp fluorescence than the six carbonyls of AAWAA, and this must reflect a difference in the conformations of the peptides. For the pentapeptides, EAWQE has a fluorescence intensity that is more than 50% greater than DYWTG, showing that the amino acid sequence influences the fluorescence intensity either directly through side-chain quenching and/or indirectly through an influence on the conformational ensemble of the peptides. Our results show that peptides are generally better models for the Trp residues in proteins than NATA. Finally, our results emphasize that we have much to learn about Trp fluorescence even in simple compounds.     

The dependence of phytoplankton fluorescence on the thermal stress factor

The results of a study of the temperature dependence of laser-induced fluorescence for four marine microalgae cultures that belonging to different taxonomic groups are described. The fluorescent properties of microalgae that were exposed to temperature stress up to irreversible changes in their cells have been examined. A comparative analysis has been performed and the models for the dependence of laser-induced fluorescence intensity on the temperature for the microalgal cell pigments have been constructed. The microalgae differ in both their dependence of fluorescence intensity on the thermal stress factor and the stress temperature value, which suggests that these characteristics are species specific.     

Fluorescence of squid axon membrane labelled with hydrophobic probes

Summary Extrinsic fluorescence changes in squid giant axons were examined under a variety of experimental conditions using 2-p-toluidinylnaphthalene-6-sulfonate (TNS) and other fluorescent probes. Measurements of the degree of polarization of the fluorescent light (with the axis of the polarizer parallel to the longitudinal axis of the axon) indicated that the class of the TNS molecules in the axon membrane which participate in production of fluorescence signals have a definite orientation with their absorption and emission oscillators directed parallel to the long axis of the axon. Rectangular depolarizing voltage pulses produced a transient decrease in the fluorescent intensity, of which the early component is correlated tentatively with the rise in the membrane conductance. In response to hyperpolarizing pulses, there was an increase in fluorescence intensity which may be explained in terms of increased incorporation of TNS into the ordered structure in the membrane. Hyperpolarizing responses in KCl depolarized axons were accompanied by a change in fluorescent intensity. Tetrodotoxin appeared to suppress the initial component of the fluorescence signal produced by depolarizing clamping pulses. The technique for detecting these fluorescence changes and the physico-chemical properties of TNS are described in some detail.     

Biodiversity patterns of Early–Middle Ordovician marine microphytoplankton in South China

Based on new materials from six sections and all available literature data, new diversity curves are presented for the phytoplankton (acritarchs) from South China, covering the Early–Middle Ordovician interval, when the Great Ordovician Biodiversification Event took place. The total diversity curve and the origination data imply that a major radiation of the phytoplankton occurred during the analysed interval. A peak of the total acritarch diversity curve appears in the A. suecicus graptolite biozone. The diversity changes vary in the different parts of the investigated area, most probably depending on the position of the analysed sections on the carbonate shelf or the slope, reflecting diversity differences due to the position on an inshore–offshore transect.The Early–Middle Ordovician diversity pattern of the phytoplankton is compared with those of several marine invertebrate groups. Compared with the diversity curve peak of the acritarchs, the conodonts and brachiopods reached their highest diversities before the acritarchs, while the highest diversity of the chitinozoans appears slightly later. The graptolites show two peaks during the Early–Middle Ordovician, while the trilobites diversity curve shows a peak only in the Sandbian. The different fossil groups, such as chitinozoans, conodonts, graptolites, brachiopods and trilobites show therefore different evolutionary patterns to that of the acritarchs, that are not yet fully understood, and correlations are so far difficult.The acritarch diversity changes can partly be compared to the local sea-level changes from four sections in South China. At a larger scale, the acritarch radiation coincides with a general transgression. At a regional or local scale, correlations are not straightforward, pointing out that more detailed data, based on both acritarch studies and more precise sea-level investigations, are necessary.     

新疆哈密地区晚泥盆世疑源类化石的发现及地质意义

从新疆哈密地区石城子北剖面7件样品获得分异度较高、有机质壁显著炭化保存的疑源类化石,根据其形态特征,共鉴定出14个形态属和15个形态种(其中8个未定种,3个比较种)。结合国内外古生代晚泥盆世已知疑源类组合进行比较,清楚表明当前获得的疑源类组合代表了晚泥盆世海洋微体浮游植物群面貌。我国涉及晚古生代疑源类生物地层的调查研究相对薄弱,而有关晚泥盆世疑源类化石的发现和报道更为匮乏,当前疑源类化石的发现,填补和丰富了新疆乃至国内晚泥盆世疑源类化石研究资料。该发现佐证了关于卡拉麦里洋在早石炭世闭合的认识;作为基础食物链的海洋微体浮游植物是重要成烃生物,晚泥盆世疑源类的保存预示研究区域具有石油、天然气勘察的前景。